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Source: ggd-utils
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
Nilesh Patra <nilesh@debian.org>,
Section: science
Priority: optional
Build-Depends:
debhelper-compat (= 13),
dh-golang,
golang-any,
golang-github-alexflint-go-arg-dev,
golang-github-biogo-hts-dev,
golang-github-shenwei356-xopen-dev,
golang-gopkg-check.v1-dev,
tabix,
debhelper
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/ggd-utils
Vcs-Git: https://salsa.debian.org/med-team/ggd-utils.git
Homepage: https://github.com/gogetdata/ggd-utils
Rules-Requires-Root: no
XS-Go-Import-Path: github.com/gogetdata/ggd-utils
Package: ggd-utils
Architecture: any
Depends:
${misc:Depends},
${shlibs:Depends},
Built-Using: ${misc:Built-Using}
Description: programs for use in ggd
Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes
Package: golang-github-gogetdata-ggd-utils-dev
Architecture: all
Depends:
${misc:Depends},
${shlibs:Depends},
Multi-Arch: foreign
Description: library for use in ggd
Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes
.
This is the library package for ggd-utils
|
