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|
### Please describe the problem.
When exporting commits to S3 with versioning=yes and exporttree=yes, deleted annexed objects are marked as deleted but deleted git objects remain. This prevents a user from retrieving a consistent version of the exporttree commit without using git-annex.
### What steps will reproduce the problem?
* Create a repository and add annexed and git objects.
* Add S3 special remote with exporttree=yes and versioning=yes
* Export to the remote.
* Remove a git object and an annexed object.
* Export again and the annexed object will be removed while the git object remains.
Example repository and publicly readable remote having this issue here:
https://github.com/openneurodatasets/ds001705
Git files in the 1.0.0 tag are still present in the S3 1.0.1 export. sub-000101/ses-baseline/pet/sub-000101_ses-baseline_rec-MLEM_pet.json is an example file not present in 1.0.1 that is still present on S3.
### What version of git-annex are you using? On what operating system?
Debian bullseye
```
git-annex version: 10.20220927-ga92546587
build flags: Assistant Webapp Pairing Inotify DBus DesktopNotify TorrentParser MagicMime Benchmark Feeds Testsuite S3 WebDAV
dependency versions: aws-0.22 bloomfilter-2.0.1.0 cryptonite-0.26 DAV-1.3.4 feed-1.3.0.1 ghc-8.8.4 http-client-0.6.4.1 persistent-sqlite-2.10.6.2 torrent-10000.1.1 uuid-1.3.13 yesod-1.6.1.0
key/value backends: SHA256E SHA256 SHA512E SHA512 SHA224E SHA224 SHA384E SHA384 SHA3_256E SHA3_256 SHA3_512E SHA3_512 SHA3_224E SHA3_224 SHA3_384E SHA3_384 SKEIN256E SKEIN256 SKEIN512E SKEIN512 BLAKE2B256E BLAKE2B256 BLAKE2B512E BLAKE2B512 BLAKE2B160E BLAKE2B160 BLAKE2B224E BLAKE2B224 BLAKE2B384E BLAKE2B384 BLAKE2BP512E BLAKE2BP512 BLAKE2S256E BLAKE2S256 BLAKE2S160E BLAKE2S160 BLAKE2S224E BLAKE2S224 BLAKE2SP256E BLAKE2SP256 BLAKE2SP224E BLAKE2SP224 SHA1E SHA1 MD5E MD5 WORM URL X*
remote types: git gcrypt p2p S3 bup directory rsync web bittorrent webdav adb tahoe glacier ddar git-lfs httpalso borg hook external
operating system: linux x86_64
supported repository versions: 8 9 10
upgrade supported from repository versions: 0 1 2 3 4 5 6 7 8 9 10
local repository version: 10
```
### Please provide any additional information below.
[[!format sh """
# git annex export 1.0.0 --to=s3-PUBLIC
export s3-PUBLIC .bidsignore
ok
export s3-PUBLIC .datalad/.gitattributes
ok
export s3-PUBLIC .datalad/config
ok
export s3-PUBLIC .gitattributes
ok
export s3-PUBLIC CHANGES
ok
export s3-PUBLIC README
ok
export s3-PUBLIC dataset_description.json
ok
export s3-PUBLIC sub-000101/ses-baseline/anat/sub-000101_ses-baseline_T1w.nii.gz
ok
export s3-PUBLIC sub-000101/ses-baseline/anat/sub-000101_ses-baseline_label-displacementROI_dseg.nii.gz
ok
export s3-PUBLIC sub-000101/ses-baseline/pet/.bidsignore
ok
export s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_K1.nii.gz
ok
export s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_Vb.nii.gz
ok
export s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_k2.nii.gz
ok
export s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_k3.nii.gz
ok
export s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_k4.nii.gz
ok
export s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_rec-MLEM_pet.json
ok
export s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_rec-MLEM_pet.nii.gz
ok
export s3-PUBLIC sub-000101/ses-displaced/anat/sub-000101_ses-displaced_T1w.nii.gz
ok
export s3-PUBLIC sub-000101/ses-displaced/anat/sub-000101_ses-displaced_label-displacementROI_dseg.nii.gz
ok
export s3-PUBLIC sub-000101/ses-displaced/pet/.bidsignore
ok
export s3-PUBLIC sub-000101/ses-displaced/pet/sub-000101_ses-displaced_k3.nii.gz
ok
export s3-PUBLIC sub-000101/ses-displaced/pet/sub-000101_ses-displaced_rec-MLEM_pet.json
ok
export s3-PUBLIC sub-000101/ses-displaced/pet/sub-000101_ses-displaced_rec-MLEM_pet.nii.gz
ok
export s3-PUBLIC sub-000102/ses-baseline/anat/sub-000102_ses-baseline_T1w.nii.gz
ok
export s3-PUBLIC sub-000102/ses-baseline/anat/sub-000102_ses-baseline_label-displacementROI_dseg.nii.gz
ok
export s3-PUBLIC sub-000102/ses-baseline/pet/.bidsignore
ok
export s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_K1.nii.gz
ok
export s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_Vb.nii.gz
ok
export s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_k2.nii.gz
ok
export s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_k3.nii.gz
ok
export s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_k4.nii.gz
ok
export s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_rec-MLEM_pet.json
ok
export s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_rec-MLEM_pet.nii.gz
ok
export s3-PUBLIC sub-000102/ses-displaced/anat/sub-000102_ses-displaced_T1w.nii.gz
ok
export s3-PUBLIC sub-000102/ses-displaced/anat/sub-000102_ses-displaced_label-displacementROI_dseg.nii.gz
ok
export s3-PUBLIC sub-000102/ses-displaced/pet/.bidsignore
ok
export s3-PUBLIC sub-000102/ses-displaced/pet/sub-000102_ses-displaced_k3.nii.gz
ok
export s3-PUBLIC sub-000102/ses-displaced/pet/sub-000102_ses-displaced_rec-MLEM_pet.json
ok
export s3-PUBLIC sub-000102/ses-displaced/pet/sub-000102_ses-displaced_rec-MLEM_pet.nii.gz
ok
export s3-PUBLIC sub-000103/ses-baseline/anat/sub-000103_ses-baseline_T1w.nii.gz
ok
export s3-PUBLIC sub-000103/ses-baseline/anat/sub-000103_ses-baseline_label-displacementROI_dseg.nii.gz
ok
export s3-PUBLIC sub-000103/ses-baseline/pet/.bidsignore
ok
export s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_K1.nii.gz
ok
export s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_Vb.nii.gz
ok
export s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_k2.nii.gz
ok
export s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_k3.nii.gz
ok
export s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_k4.nii.gz
ok
export s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_rec-MLEM_pet.json
ok
export s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_rec-MLEM_pet.nii.gz
ok
export s3-PUBLIC sub-000103/ses-displaced/anat/sub-000103_ses-displaced_T1w.nii.gz
ok
export s3-PUBLIC sub-000103/ses-displaced/anat/sub-000103_ses-displaced_label-displacementROI_dseg.nii.gz
ok
export s3-PUBLIC sub-000103/ses-displaced/pet/.bidsignore
ok
export s3-PUBLIC sub-000103/ses-displaced/pet/sub-000103_ses-displaced_k3.nii.gz
ok
export s3-PUBLIC sub-000103/ses-displaced/pet/sub-000103_ses-displaced_rec-MLEM_pet.json
ok
export s3-PUBLIC sub-000103/ses-displaced/pet/sub-000103_ses-displaced_rec-MLEM_pet.nii.gz
ok
export s3-PUBLIC sub-000104/ses-baseline/anat/sub-000104_ses-baseline_T1w.nii.gz
ok
export s3-PUBLIC sub-000104/ses-baseline/anat/sub-000104_ses-baseline_label-displacementROI_dseg.nii.gz
ok
export s3-PUBLIC sub-000104/ses-baseline/pet/.bidsignore
ok
export s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_K1.nii.gz
ok
export s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_Vb.nii.gz
ok
export s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_k2.nii.gz
ok
export s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_k3.nii.gz
ok
export s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_k4.nii.gz
ok
export s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_rec-MLEM_pet.json
ok
export s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_rec-MLEM_pet.nii.gz
ok
export s3-PUBLIC sub-000104/ses-displaced/anat/sub-000104_ses-displaced_T1w.nii.gz
ok
export s3-PUBLIC sub-000104/ses-displaced/anat/sub-000104_ses-displaced_label-displacementROI_dseg.nii.gz
ok
export s3-PUBLIC sub-000104/ses-displaced/pet/.bidsignore
ok
export s3-PUBLIC sub-000104/ses-displaced/pet/sub-000104_ses-displaced_k3.nii.gz
ok
export s3-PUBLIC sub-000104/ses-displaced/pet/sub-000104_ses-displaced_rec-MLEM_pet.json
ok
export s3-PUBLIC sub-000104/ses-displaced/pet/sub-000104_ses-displaced_rec-MLEM_pet.nii.gz
ok
export s3-PUBLIC sub-000105/ses-baseline/anat/sub-000105_ses-baseline_T1w.nii.gz
ok
export s3-PUBLIC sub-000105/ses-baseline/anat/sub-000105_ses-baseline_label-displacementROI_dseg.nii.gz
ok
export s3-PUBLIC sub-000105/ses-baseline/pet/.bidsignore
ok
export s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_K1.nii.gz
ok
export s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_Vb.nii.gz
ok
export s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_k2.nii.gz
ok
export s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_k3.nii.gz
ok
export s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_k4.nii.gz
ok
export s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_rec-MLEM_pet.json
ok
export s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_rec-MLEM_pet.nii.gz
ok
export s3-PUBLIC sub-000105/ses-displaced/anat/sub-000105_ses-displaced_T1w.nii.gz
ok
export s3-PUBLIC sub-000105/ses-displaced/anat/sub-000105_ses-displaced_label-displacementROI_dseg.nii.gz
ok
export s3-PUBLIC sub-000105/ses-displaced/pet/.bidsignore
ok
export s3-PUBLIC sub-000105/ses-displaced/pet/sub-000105_ses-displaced_k3.nii.gz
ok
export s3-PUBLIC sub-000105/ses-displaced/pet/sub-000105_ses-displaced_rec-MLEM_pet.json
ok
export s3-PUBLIC sub-000105/ses-displaced/pet/sub-000105_ses-displaced_rec-MLEM_pet.nii.gz
ok
(recording state in git...)
# git annex export 1.0.1 --to=s3-PUBLIC
unexport s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_K1.nii.gz ok
unexport s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_k2.nii.gz ok
unexport s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_k3.nii.gz ok
unexport s3-PUBLIC .bidsignore ok
unexport s3-PUBLIC sub-000101/ses-baseline/anat/sub-000101_ses-baseline_T1w.nii.gz ok
rename s3-PUBLIC sub-000101/ses-baseline/anat/sub-000101_ses-baseline_label-displacementROI_dseg.nii.gz -> .git-annex-tmp-content-MD5E-s9793--13db6c96808070211b8987c327240ff8.nii.gz ok
unexport s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_Vb.nii.gz ok
unexport s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_K1.nii.gz ok
unexport s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_Vb.nii.gz ok
unexport s3-PUBLIC sub-000104/ses-baseline/anat/sub-000104_ses-baseline_T1w.nii.gz ok
unexport s3-PUBLIC sub-000104/ses-displaced/pet/sub-000104_ses-displaced_rec-MLEM_pet.nii.gz ok
unexport s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_k4.nii.gz ok
unexport s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_k3.nii.gz ok
unexport s3-PUBLIC sub-000103/ses-displaced/anat/sub-000103_ses-displaced_T1w.nii.gz ok
unexport s3-PUBLIC sub-000105/ses-displaced/pet/sub-000105_ses-displaced_k3.nii.gz ok
rename s3-PUBLIC sub-000102/ses-displaced/anat/sub-000102_ses-displaced_label-displacementROI_dseg.nii.gz -> .git-annex-tmp-content-MD5E-s9794--419a63ecba6de7235554c1f5a7fbc7d8.nii.gz ok
rename s3-PUBLIC sub-000102/ses-baseline/anat/sub-000102_ses-baseline_label-displacementROI_dseg.nii.gz -> .git-annex-tmp-content-MD5E-s9793--45358ccfe2d8a7455c3202691ee632eb.nii.gz ok
unexport s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_rec-MLEM_pet.nii.gz ok
rename s3-PUBLIC sub-000105/ses-baseline/anat/sub-000105_ses-baseline_label-displacementROI_dseg.nii.gz -> .git-annex-tmp-content-MD5E-s9793--508a92de80b90e3030d2e46bb920f051.nii.gz ok
rename s3-PUBLIC sub-000101/ses-displaced/anat/sub-000101_ses-displaced_label-displacementROI_dseg.nii.gz -> .git-annex-tmp-content-MD5E-s9794--512f12576f0f99de20f12aa715000251.nii.gz ok
unexport s3-PUBLIC dataset_description.json ok
unexport s3-PUBLIC sub-000105/ses-displaced/pet/sub-000105_ses-displaced_rec-MLEM_pet.nii.gz ok
unexport s3-PUBLIC CHANGES ok
unexport s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_Vb.nii.gz ok
unexport s3-PUBLIC sub-000101/ses-displaced/anat/sub-000101_ses-displaced_T1w.nii.gz ok
unexport s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_K1.nii.gz ok
unexport s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_K1.nii.gz ok
unexport s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_rec-MLEM_pet.nii.gz ok
rename s3-PUBLIC sub-000105/ses-displaced/anat/sub-000105_ses-displaced_label-displacementROI_dseg.nii.gz -> .git-annex-tmp-content-MD5E-s9794--726e1c95511fb7b8bc94f275e9d6e9e7.nii.gz ok
unexport s3-PUBLIC sub-000105/ses-baseline/anat/sub-000105_ses-baseline_T1w.nii.gz ok
unexport s3-PUBLIC sub-000105/ses-displaced/pet/.bidsignore ok
unexport s3-PUBLIC sub-000105/ses-displaced/anat/sub-000105_ses-displaced_T1w.nii.gz ok
unexport s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_Vb.nii.gz ok
unexport s3-PUBLIC sub-000103/ses-displaced/pet/sub-000103_ses-displaced_rec-MLEM_pet.nii.gz ok
unexport s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_rec-MLEM_pet.nii.gz ok
rename s3-PUBLIC sub-000103/ses-displaced/anat/sub-000103_ses-displaced_label-displacementROI_dseg.nii.gz -> .git-annex-tmp-content-MD5E-s9794--887598ee2277aeebae901fd7d97a7f4c.nii.gz ok
unexport s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_k4.nii.gz ok
unexport s3-PUBLIC sub-000105/ses-displaced/pet/sub-000105_ses-displaced_rec-MLEM_pet.json ok
unexport s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_Vb.nii.gz ok
unexport s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_k3.nii.gz ok
unexport s3-PUBLIC sub-000103/ses-displaced/pet/sub-000103_ses-displaced_k3.nii.gz ok
unexport s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_k4.nii.gz ok
unexport s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_k3.nii.gz ok
unexport s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_rec-MLEM_pet.nii.gz ok
unexport s3-PUBLIC sub-000103/ses-baseline/anat/sub-000103_ses-baseline_T1w.nii.gz ok
unexport s3-PUBLIC sub-000102/ses-displaced/anat/sub-000102_ses-displaced_T1w.nii.gz ok
unexport s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_k2.nii.gz ok
unexport s3-PUBLIC sub-000101/ses-displaced/pet/sub-000101_ses-displaced_k3.nii.gz ok
unexport s3-PUBLIC README ok
rename s3-PUBLIC sub-000104/ses-displaced/anat/sub-000104_ses-displaced_label-displacementROI_dseg.nii.gz -> .git-annex-tmp-content-MD5E-s9794--bd645a943d74dda136f4e0c421d49c85.nii.gz ok
unexport s3-PUBLIC sub-000104/ses-displaced/pet/sub-000104_ses-displaced_k3.nii.gz ok
unexport s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_K1.nii.gz ok
unexport s3-PUBLIC sub-000101/ses-displaced/pet/sub-000101_ses-displaced_rec-MLEM_pet.nii.gz ok
unexport s3-PUBLIC sub-000102/ses-displaced/pet/sub-000102_ses-displaced_k3.nii.gz ok
unexport s3-PUBLIC sub-000102/ses-baseline/anat/sub-000102_ses-baseline_T1w.nii.gz ok
unexport s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_k2.nii.gz ok
unexport s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_k4.nii.gz ok
unexport s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_k2.nii.gz ok
rename s3-PUBLIC sub-000104/ses-baseline/anat/sub-000104_ses-baseline_label-displacementROI_dseg.nii.gz -> .git-annex-tmp-content-MD5E-s9793--de819fa10f3f6253e4eeec3b77158726.nii.gz ok
unexport s3-PUBLIC sub-000102/ses-displaced/pet/sub-000102_ses-displaced_rec-MLEM_pet.nii.gz ok
unexport s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_k3.nii.gz ok
rename s3-PUBLIC sub-000103/ses-baseline/anat/sub-000103_ses-baseline_label-displacementROI_dseg.nii.gz -> .git-annex-tmp-content-MD5E-s9793--e6f2a37df1a0a47325fc9cb065117e0d.nii.gz ok
unexport s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_k2.nii.gz ok
unexport s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_rec-MLEM_pet.nii.gz ok
unexport s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_k4.nii.gz ok
unexport s3-PUBLIC sub-000104/ses-displaced/anat/sub-000104_ses-displaced_T1w.nii.gz ok
rename s3-PUBLIC .git-annex-tmp-content-MD5E-s9793--13db6c96808070211b8987c327240ff8.nii.gz -> derivatives/masks/sub-000101/ses-baseline/sub-000101_ses-baseline_label-displacementROI_dseg.nii.gz ok
rename s3-PUBLIC .git-annex-tmp-content-MD5E-s9794--419a63ecba6de7235554c1f5a7fbc7d8.nii.gz -> derivatives/masks/sub-000102/ses-displaced/sub-000102_ses-displaced_label-displacementROI_dseg.nii.gz ok
rename s3-PUBLIC .git-annex-tmp-content-MD5E-s9793--45358ccfe2d8a7455c3202691ee632eb.nii.gz -> derivatives/masks/sub-000102/ses-baseline/sub-000102_ses-baseline_label-displacementROI_dseg.nii.gz ok
rename s3-PUBLIC .git-annex-tmp-content-MD5E-s9793--508a92de80b90e3030d2e46bb920f051.nii.gz -> derivatives/masks/sub-000105/ses-baseline/sub-000105_ses-baseline_label-displacementROI_dseg.nii.gz ok
rename s3-PUBLIC .git-annex-tmp-content-MD5E-s9794--512f12576f0f99de20f12aa715000251.nii.gz -> derivatives/masks/sub-000101/ses-displaced/sub-000101_ses-displaced_label-displacementROI_dseg.nii.gz ok
rename s3-PUBLIC .git-annex-tmp-content-MD5E-s9794--726e1c95511fb7b8bc94f275e9d6e9e7.nii.gz -> derivatives/masks/sub-000105/ses-displaced/sub-000105_ses-displaced_label-displacementROI_dseg.nii.gz ok
rename s3-PUBLIC .git-annex-tmp-content-MD5E-s9794--887598ee2277aeebae901fd7d97a7f4c.nii.gz -> derivatives/masks/sub-000103/ses-displaced/sub-000103_ses-displaced_label-displacementROI_dseg.nii.gz ok
rename s3-PUBLIC .git-annex-tmp-content-MD5E-s9794--bd645a943d74dda136f4e0c421d49c85.nii.gz -> derivatives/masks/sub-000104/ses-displaced/sub-000104_ses-displaced_label-displacementROI_dseg.nii.gz ok
rename s3-PUBLIC .git-annex-tmp-content-MD5E-s9793--de819fa10f3f6253e4eeec3b77158726.nii.gz -> derivatives/masks/sub-000104/ses-baseline/sub-000104_ses-baseline_label-displacementROI_dseg.nii.gz ok
rename s3-PUBLIC .git-annex-tmp-content-MD5E-s9793--e6f2a37df1a0a47325fc9cb065117e0d.nii.gz -> derivatives/masks/sub-000103/ses-baseline/sub-000103_ses-baseline_label-displacementROI_dseg.nii.gz ok
export s3-PUBLIC .bidsignore
ok
export s3-PUBLIC CHANGES
ok
export s3-PUBLIC LICENSE
ok
export s3-PUBLIC README
ok
export s3-PUBLIC dataset_description.json
ok
export s3-PUBLIC derivatives/masks/dseg.tsv
ok
export s3-PUBLIC participants.json
ok
export s3-PUBLIC participants.tsv
ok
export s3-PUBLIC sub-000101/ses-baseline/anat/sub-000101_ses-baseline_T1w.json
ok
export s3-PUBLIC sub-000101/ses-baseline/anat/sub-000101_ses-baseline_T1w.nii
ok
export s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_pet.json
ok
export s3-PUBLIC sub-000101/ses-baseline/pet/sub-000101_ses-baseline_pet.nii
ok
export s3-PUBLIC sub-000101/ses-displaced/anat/sub-000101_ses-displaced_T1w.json
ok
export s3-PUBLIC sub-000101/ses-displaced/anat/sub-000101_ses-displaced_T1w.nii
ok
export s3-PUBLIC sub-000101/ses-displaced/pet/sub-000101_ses-displaced_pet.json
ok
export s3-PUBLIC sub-000101/ses-displaced/pet/sub-000101_ses-displaced_pet.nii
ok
export s3-PUBLIC sub-000102/ses-baseline/anat/sub-000102_ses-baseline_T1w.json
ok
export s3-PUBLIC sub-000102/ses-baseline/anat/sub-000102_ses-baseline_T1w.nii
ok
export s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_pet.json
ok
export s3-PUBLIC sub-000102/ses-baseline/pet/sub-000102_ses-baseline_pet.nii
ok
export s3-PUBLIC sub-000102/ses-displaced/anat/sub-000102_ses-displaced_T1w.json
ok
export s3-PUBLIC sub-000102/ses-displaced/anat/sub-000102_ses-displaced_T1w.nii
ok
export s3-PUBLIC sub-000102/ses-displaced/pet/sub-000102_ses-displaced_pet.json
ok
export s3-PUBLIC sub-000102/ses-displaced/pet/sub-000102_ses-displaced_pet.nii
ok
export s3-PUBLIC sub-000103/ses-baseline/anat/sub-000103_ses-baseline_T1w.json
ok
export s3-PUBLIC sub-000103/ses-baseline/anat/sub-000103_ses-baseline_T1w.nii
ok
export s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_pet.json
ok
export s3-PUBLIC sub-000103/ses-baseline/pet/sub-000103_ses-baseline_pet.nii
ok
export s3-PUBLIC sub-000103/ses-displaced/anat/sub-000103_ses-displaced_T1w.json
ok
export s3-PUBLIC sub-000103/ses-displaced/anat/sub-000103_ses-displaced_T1w.nii
ok
export s3-PUBLIC sub-000103/ses-displaced/pet/sub-000103_ses-displaced_pet.json
ok
export s3-PUBLIC sub-000103/ses-displaced/pet/sub-000103_ses-displaced_pet.nii
ok
export s3-PUBLIC sub-000104/ses-baseline/anat/sub-000104_ses-baseline_T1w.json
ok
export s3-PUBLIC sub-000104/ses-baseline/anat/sub-000104_ses-baseline_T1w.nii
ok
export s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_pet.json
ok
export s3-PUBLIC sub-000104/ses-baseline/pet/sub-000104_ses-baseline_pet.nii
ok
export s3-PUBLIC sub-000104/ses-displaced/anat/sub-000104_ses-displaced_T1w.json
ok
export s3-PUBLIC sub-000104/ses-displaced/anat/sub-000104_ses-displaced_T1w.nii
ok
export s3-PUBLIC sub-000104/ses-displaced/pet/sub-000104_ses-displaced_pet.json
ok
export s3-PUBLIC sub-000104/ses-displaced/pet/sub-000104_ses-displaced_pet.nii
ok
export s3-PUBLIC sub-000105/ses-baseline/anat/sub-000105_ses-baseline_T1w.json
ok
export s3-PUBLIC sub-000105/ses-baseline/anat/sub-000105_ses-baseline_T1w.nii
ok
export s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_pet.json
ok
export s3-PUBLIC sub-000105/ses-baseline/pet/sub-000105_ses-baseline_pet.nii
ok
export s3-PUBLIC sub-000105/ses-displaced/anat/sub-000105_ses-displaced_T1w.json
ok
export s3-PUBLIC sub-000105/ses-displaced/anat/sub-000105_ses-displaced_T1w.nii
ok
export s3-PUBLIC sub-000105/ses-displaced/pet/sub-000105_ses-displaced_pet.json
ok
export s3-PUBLIC sub-000105/ses-displaced/pet/sub-000105_ses-displaced_pet.nii
ok
(recording state in git...)
# End of transcript or log.
"""]]
### Have you had any luck using git-annex before? (Sometimes we get tired of reading bug reports all day and a lil' positive end note does wonders)
Thank you for all your work making this wonderful tool!
[[!meta title="export tree bug when two files with the same content both should be removed"]]
> [[fixed|done]] --[[Joey]]
|
