File: test_session_back_compat.py

package info (click to toggle)
glueviz 1.0.1%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 30,340 kB
  • sloc: python: 44,462; makefile: 138; sh: 70
file content (333 lines) | stat: -rw-r--r-- 10,919 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
# Make sure that session files can be read in a backward-compatible manner

import os
import pytest
import numpy as np

from glue.tests.helpers import requires_astropy, requires_h5py, requires_qt, PYSIDE2_INSTALLED  # noqa
from glue.core.component import CoordinateComponent, Component
from glue.core.state import GlueUnSerializer
from glue.core.component_id import PixelComponentID

DATA = os.path.join(os.path.dirname(__file__), 'data')


@requires_qt
@requires_astropy
def test_load_simple_tables_04():

    # This loads a session file made with Glue v0.4. In this session, we have
    # loaded four tables. The first two are from the same file, but one loaded
    # via the auto loader and the other via the Astropy FITS table loader. The
    # second two were loaded similarly to the first two, but the file contains
    # two HDUs this time. However, in Glue v0.4, only the first HDU was read so
    # we shouldn't have access to columns c and d in ``double_tables.fits``.

    with open(os.path.join(DATA, 'simple_tables.glu'), 'r') as f:
        template = f.read()

    content = template.replace('{DATA_PATH}', (DATA + os.sep).replace('\\', '\\\\'))
    state = GlueUnSerializer.loads(content)

    ga = state.object('__main__')

    dc = ga.session.data_collection

    # All tables should actually be the same because the FITS reader back at
    # 0.4 only read in the first HDU so the new reader is back-compatible
    # since it preserves HDU order.

    assert len(dc) == 4

    assert dc[0].label == 'single_table_auto'
    assert dc[1].label == 'single_table'
    assert dc[2].label == 'double_tables_auto'
    assert dc[3].label == 'double_tables'

    np.testing.assert_equal(dc[0]['a'], [1, 2, 3])
    np.testing.assert_equal(dc[0]['b'], [4, 5, 6])
    np.testing.assert_equal(dc[0]['a'], dc[1]['a'])
    np.testing.assert_equal(dc[0]['b'], dc[1]['b'])
    np.testing.assert_equal(dc[0]['a'], dc[2]['a'])
    np.testing.assert_equal(dc[0]['b'], dc[2]['b'])
    np.testing.assert_equal(dc[0]['a'], dc[3]['a'])
    np.testing.assert_equal(dc[0]['b'], dc[3]['b'])

    ga.close()


@requires_qt
@requires_h5py
def test_load_hdf5_grids_04():

    # This loads a session file made with Glue v0.4. In this session, we have
    # loaded two gridded datasets from an HDF5 datafile: the first one loaded
    # via the auto loader and the other via the FITS/HDF5 loader.

    with open(os.path.join(DATA, 'simple_hdf5_grid.glu'), 'r') as f:
        template = f.read()

    content = template.replace('{DATA_PATH}', (DATA + os.sep).replace('\\', '\\\\'))
    state = GlueUnSerializer.loads(content)

    ga = state.object('__main__')

    dc = ga.session.data_collection

    assert len(dc) == 2

    assert dc[0].label == 'single_grid_auto'
    assert dc[1].label == 'single_grid'

    np.testing.assert_equal(dc[0]['/array1'], 1)
    np.testing.assert_equal(dc[0]['/array1'].shape, (2, 3, 4))

    ga.close()


@requires_qt
@requires_astropy
def test_load_link_helpers_04():

    # This loads a session file made with Glue v0.4. In this session, we have
    # two tables, and we use all the celestial link functions that were present
    # in Glue v0.4. We now check that the paths are patched when loading the
    # session (since the functions have been moved to a deprecated location)

    with open(os.path.join(DATA, 'session_links.glu'), 'r') as f:
        content = f.read()

    state = GlueUnSerializer.loads(content)

    ga = state.object('__main__')
    ga.close()


@requires_qt
@requires_astropy
@pytest.mark.skipif('PYSIDE2_INSTALLED')
def test_load_viewers_04():

    # FIXME - for some reason this test with PySide2 causes a leftover reference
    # to GlueApplication and appears to be due to x_log being True in the
    # scatter plot. I suspect maybe there is some kind of circular reference

    # This loads a session file made with Glue v0.4. In this session, we have
    # three viewers: one scatter viewer, one image viewer, and one histogram
    # viewer.

    with open(os.path.join(DATA, 'simple_viewers.glu'), 'r') as f:
        content = f.read()

    state = GlueUnSerializer.loads(content)

    ga = state.object('__main__')

    assert len(ga.viewers[0]) == 3
    labels = sorted([x.LABEL for x in ga.viewers[0]])

    assert labels == ['1D Histogram', '2D Image', '2D Scatter']

    viewers = {}
    for x in ga.viewers[0]:
        viewers[x.LABEL] = x

    h = viewers['1D Histogram']
    assert h.viewer_size == (1235, 531)
    assert h.position == (0, 535)
    assert h.state.x_att.label == 'b'

    i = viewers['2D Image']
    assert i.viewer_size == (562, 513)
    assert i.position == (672, 0)
    assert i.state.layers[0].attribute.label == "image"

    s = viewers['2D Scatter']
    assert s.viewer_size == (670, 512)
    assert s.position == (0, 0)
    assert s.state.x_att.label == 'b'
    assert s.state.y_att.label == 'a'
    assert s.state.x_log
    assert not s.state.y_log

    ga.close()


@requires_qt
def test_load_pixel_components_07():

    # This loads a session file made with Glue v0.7. In 0.7 and before,
    # PixelComponentID did not exist, so we need to make sure that when loading
    # in such files, we transform the appropriate ComponentIDs to
    # PixelComponentIDs.

    with open(os.path.join(DATA, 'glue_v0.7_pixel_roi_selection.glu'), 'r') as f:
        content = f.read()

    state = GlueUnSerializer.loads(content)

    ga = state.object('__main__')

    assert isinstance(ga.data_collection[0].pixel_component_ids[0], PixelComponentID)
    assert isinstance(ga.data_collection[0].pixel_component_ids[1], PixelComponentID)

    ga.close()


@requires_qt
def test_table_widget_010():

    from glue.viewers.table.qt.tests.test_data_viewer import check_values_and_color

    # This loads a session file made with Glue v0.10 that includes a table
    # viewer. This is to make sure that loading table viewers from old files
    # will always be backward-compatible.

    with open(os.path.join(DATA, 'glue_v0.10_table.glu'), 'r') as f:
        state = GlueUnSerializer.load(f)

    ga = state.object('__main__')

    viewer = ga.viewers[0][0]

    data = {'x': [1, 2, 3],
            'y': [4, 5, 6]}

    colors = ['#e31a1c', '#6d7326', None]

    check_values_and_color(viewer.model, data, colors)

    ga.close()


@requires_qt
@pytest.mark.parametrize('protocol', (0, 1))
def test_load_log(protocol):

    # Prior to Glue v0.13, components were added to the data as: first
    # non-coordinate component, then coordinate components, then remaining non-
    # coordinate components. In Glue v0.13, this changed to be coordinate
    # components then non-coordinate components. The LoadLog functionality
    # relies on an absolute component index, so we need to be careful - if the
    # session file was created prior to Glue v0.13, we need to load the
    # components in the log using the old order. The load_log_1.glu file was
    # made with Glue v0.12.2, while the load_log_2.glu file was made with
    # Glue v0.13.

    with open(os.path.join(DATA, 'load_log_{0}.glu'.format(protocol)), 'r') as f:
        template = f.read()

    content = template.replace('{DATA_PATH}', (DATA + os.sep).replace('\\', '\\\\'))
    state = GlueUnSerializer.loads(content)

    ga = state.object('__main__')

    dc = ga.session.data_collection

    assert len(dc) == 1

    data = dc[0]

    assert data.label == 'simple'

    np.testing.assert_equal(data['Pixel Axis 0 [x]'], [0, 1, 2])
    np.testing.assert_equal(data['World 0'], [0, 1, 2])
    np.testing.assert_equal(data['a'], [1, 3, 5])
    np.testing.assert_equal(data['b'], [2, 2, 3])

    if protocol == 0:
        assert data.components == [data.id['a'], data.id['Pixel Axis 0 [x]'], data.id['World 0'], data.id['b']]
    else:
        assert data.components == [data.id['Pixel Axis 0 [x]'], data.id['World 0'], data.id['a'], data.id['b']]

    assert type(data.get_component('Pixel Axis 0 [x]')) == CoordinateComponent
    assert type(data.get_component('World 0')) == CoordinateComponent
    assert type(data.get_component('a')) == Component
    assert type(data.get_component('b')) == Component

    ga.close()


@requires_qt
@requires_astropy
def test_load_coordinate_link_helpers_013():

    # This loads a session file made with Glue v0.13. In this session, we have
    # two tables, and we use all the celestial link functions that were present
    # in Glue v0.13. We now check that the paths are patched when loading the
    # session (since the functions have been moved to a deprecated location)

    with open(os.path.join(DATA, 'session_coordinate_links_013.glu'), 'r') as f:
        content = f.read()

    state = GlueUnSerializer.loads(content)

    ga = state.object('__main__')

    data1, data2 = ga.session.data_collection

    print(data1)
    print(data2)

    # Check that the links works
    data1[data2.id['x']]
    data1[data2.id['y']]
    data2[data1.id['x']]
    data2[data1.id['y']]

    ga.close()


@requires_qt
@requires_astropy
def test_load_resave_coords(tmp_path):

    # This is a regression test for a bug that caused issues when creating a
    # session file with a dataset without any world coordinates (e.g. a table)
    # in glue 0.15, then loading and re-saving the session in glue 0.16. The
    # issue is that the glue 0.16 file will use LoadLog with protocol 2, but
    # since the file was originally created in glue 0.15, it will include a
    # fake world coordinate column. LoadLog with protocol 2 was incorrectly
    # assumed to never have these world coordinates.

    # Load in a file create with glue 0.15.* which includes a world component
    # even though Data.coords is the default identity transform
    with open(os.path.join(DATA, 'simple_table_015.glu'), 'r') as f:
        template = f.read()

    content = template.replace('{DATA_PATH}', (DATA + os.sep).replace('\\', '\\\\'))
    state = GlueUnSerializer.loads(content)

    ga = state.object('__main__')
    dc = ga.session.data_collection
    assert len(dc) == 1
    ga.save_session(tmp_path / 'test.glu')
    ga.close()

    with open(tmp_path / 'test.glu', 'r') as f:
        content = f.read()

    state = GlueUnSerializer.loads(content)
    ga = state.object('__main__')
    dc = ga.session.data_collection
    assert len(dc) == 1
    ga.close()


@requires_qt
@requires_astropy
def test_load_resave_coords_intermediate(tmp_path):

    # Load in a file create with glue 0.15.* which includes a world component
    # even though Data.coords is the default identity transform
    with open(os.path.join(DATA, 'simple_table_resaved.glu'), 'r') as f:
        template = f.read()

    content = template.replace('{DATA_PATH}', (DATA + os.sep).replace('\\', '\\\\'))
    state = GlueUnSerializer.loads(content)

    ga = state.object('__main__')
    dc = ga.session.data_collection
    assert len(dc) == 1
    ga.save_session(tmp_path / 'test.glu')
    ga.close()