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#!/usr/bin/make -f
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
pkg := $(shell dpkg-parsechangelog --show-field=Source)
version := $(shell dpkg-parsechangelog --show-field=Version)
mandir := $(CURDIR)/debian/$(pkg)/usr/share/man/man1
utildir := $(CURDIR)/util
bindir := $(CURDIR)/src
DEB_HOST_ARCH ?= $(shell dpkg-architecture -qDEB_HOST_ARCH)
EXTRA_CONFIGURE_ARGS =
ifeq ($(DEB_HOST_ARCH), i386)
EXTRA_CONFIGURE_ARGS += --enable-sse4.1=no --disable-simd
endif
HELP2MAN = /usr/bin/help2man --no-info --version-string="$(version)"
%:
dh $@ --parallel --with autotools_dev
override_dh_auto_configure:
dh_auto_configure -- --enable-shared --with-gmapdb=/var/cache/gmap \
--bindir=/usr/lib/gmap $(EXTRA_CONFIGURE_ARGS)
override_dh_auto_install:
mkdir -p $(mandir)
$(HELP2MAN) --name='Genomic Mapping and Alignment Program' \
$(bindir)/gmap |debian/filter.pl >$(mandir)/gmap.1;
$(HELP2MAN) --name='Genomic Short-read Nucleotide Alignment Program' \
$(bindir)/gsnap |debian/filter.pl >$(mandir)/gsnap.1;
$(HELP2MAN) --name='Tool for genome database creation for GMAP or GSNAP' \
$(utildir)/gmap_build |debian/filter.pl >$(mandir)/gmap_build.1;
dh_auto_install
override_dh_install:
dh_install
mkdir -p debian/$(pkg)/usr/bin
for bin in gmap_build gmap gsnap \
$(shell cd $(CURDIR)/debian/$(pkg)/usr/lib/gmap/; ls -1 gmap.*; ls -1 gsnap.*); \
do ln -s /usr/lib/gmap/$$bin debian/$(pkg)/usr/bin/$$bin; \
done
override_dh_auto_test:
dh_auto_test --no-parallel
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