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EXTRA_DIST = defs ss.chr17test ss.her2 \
align.test.ok coords1.test.ok \
setup.genomecomp.ok setup.ref123positions.ok \
map.test.ok \
fa.iittest iittest.iit.ok iit_get.out.ok
CLEANFILES = align.test.out \
coords.chr17test \
gmap_setup gmapindex chr17test/chr17test.* Makefile.chr17test \
map.test.out \
iittest.iit iit_get.out iit_dump.out
if MAINTAINER
TESTS = align.test coords1.test setup1.test iit.test \
bioinfo.splicing.test
else
TESTS = align.test coords1.test setup1.test iit.test
endif
TESTS_ENVIRONMENT = top_builddir=$(top_builddir)
testsubdir = testSubDir
distclean-local:
rm -rf $(testsubdir)
okay:
../src/gmap -A -g ss.chr17test ss.her2 > align.test.ok
# ./fa_coords -o coords.chr17test ss.chr17test
# ./gmap_setup -D . -d chr17test ss.chr17test && make -f Makefile.chr17test coords && make -f Makefile.chr17test gmapdb
./gmap_build -D . -d chr17test ss.chr17test
../src/gmap -D . -d chr17test ss.her2 > map.test.ok
mv -f coords.chr17test coords1.test.ok
mv -f chr17test.genomecomp setup.genomecomp.ok
mv -f chr17test.ref123positions setup.ref123positions.ok
../src/iit_store -o iittest fa.iittest
../src/iit_get iittest 20000 > iit_get.out.ok
mv iittest.iit iittest.iit.ok
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