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if FULLDIST
bin_SCRIPTS = gmap_compress gmap_uncompress gmap_process gmap_build gmap_reassemble md_coords fa_coords \
psl_splicesites psl_introns psl_genes \
ensembl_genes \
gtf_splicesites gtf_introns gtf_genes \
gff3_splicesites gff3_introns gff3_genes \
dbsnp_iit gvf_iit vcf_iit sam_merge sam_restore
else
bin_SCRIPTS = gmap_compress gmap_uncompress gmap_process gmap_build gmap_reassemble md_coords fa_coords \
psl_splicesites psl_introns psl_genes \
ensembl_genes \
gtf_splicesites gtf_introns gtf_genes \
gff3_splicesites gff3_introns gff3_genes \
dbsnp_iit gvf_iit vcf_iit
endif
gmap_compress: gmap_compress.pl
cp gmap_compress.pl gmap_compress
chmod +x gmap_compress
gmap_uncompress: gmap_uncompress.pl
cp gmap_uncompress.pl gmap_uncompress
chmod +x gmap_uncompress
gmap_process: gmap_process.pl
cp gmap_process.pl gmap_process
chmod +x gmap_process
gmap_build: gmap_build.pl
cp gmap_build.pl gmap_build
chmod +x gmap_build
gmap_reassemble: gmap_reassemble.pl
cp gmap_reassemble.pl gmap_reassemble
chmod +x gmap_reassemble
md_coords: md_coords.pl
cp md_coords.pl md_coords
chmod +x md_coords
fa_coords: fa_coords.pl
cp fa_coords.pl fa_coords
chmod +x fa_coords
psl_splicesites: psl_splicesites.pl
cp psl_splicesites.pl psl_splicesites
chmod +x psl_splicesites
psl_genes: psl_genes.pl
cp psl_genes.pl psl_genes
chmod +x psl_genes
psl_introns: psl_introns.pl
cp psl_introns.pl psl_introns
chmod +x psl_introns
psl_splices: psl_splices.pl
cp psl_splices.pl psl_splices
chmod +x psl_splices
ensembl_genes: ensembl_genes.pl
cp ensembl_genes.pl ensembl_genes
chmod +x ensembl_genes
gtf_splicesites: gtf_splicesites.pl
cp gtf_splicesites.pl gtf_splicesites
chmod +x gtf_splicesites
gtf_introns: gtf_introns.pl
cp gtf_introns.pl gtf_introns
chmod +x gtf_introns
gtf_genes: gtf_genes.pl
cp gtf_genes.pl gtf_genes
chmod +x gtf_genes
gff3_splicesites: gff3_splicesites.pl
cp gff3_splicesites.pl gff3_splicesites
chmod +x gff3_splicesites
gff3_introns: gff3_introns.pl
cp gff3_introns.pl gff3_introns
chmod +x gff3_introns
gff3_genes: gff3_genes.pl
cp gff3_genes.pl gff3_genes
chmod +x gff3_genes
dbsnp_iit: dbsnp_iit.pl
cp dbsnp_iit.pl dbsnp_iit
chmod +x dbsnp_iit
gvf_iit: gvf_iit.pl
cp gvf_iit.pl gvf_iit
chmod +x gvf_iit
vcf_iit: vcf_iit.pl
cp vcf_iit.pl vcf_iit
chmod +x vcf_iit
sam_merge: sam_merge.pl
cp sam_merge.pl sam_merge
chmod +x sam_merge
sam_restore: sam_restore.pl
cp sam_restore.pl sam_restore
chmod +x sam_restore
if FULLDIST
CLEANFILES = gmap_compress gmap_uncompress gmap_process gmap_build gmap_reassemble md_coords fa_coords \
psl_splicesites psl_introns psl_genes \
ensembl_genes \
gtf_splicesites gtf_introns gtf_genes \
gff3_splicesites gff3_introns gff3_genes \
dbsnp_iit gvf_iit vcf_iit sam_merge sam_restore
else
CLEANFILES = gmap_compress gmap_uncompress gmap_process gmap_build gmap_reassemble md_coords fa_coords \
psl_splicesites psl_introns psl_genes \
ensembl_genes \
gtf_splicesites gtf_introns gtf_genes \
gff3_splicesites gff3_introns gff3_genes \
dbsnp_iit gvf_iit vcf_iit
endif
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