1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
|
#!/usr/bin/make -f
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
include /usr/share/dpkg/default.mk
mandir := $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/man/man1
utildir := $(CURDIR)/util
bindir := $(CURDIR)/src
DEB_HOST_ARCH ?= $(shell dpkg-architecture -qDEB_HOST_ARCH)
HELP2MAN = /usr/bin/help2man --no-info --version-string=${DEB_VERSION}
%:
dh $@
override_dh_auto_configure:
dh_auto_configure -- --with-gmapdb=/var/cache/gmap \
--bindir=/usr/lib/gmap
override_dh_auto_install:
mkdir -p $(mandir)
$(HELP2MAN) --name='Genomic Mapping and Alignment Program' \
$(bindir)/gmap |debian/filter.pl >$(mandir)/gmap.1
$(HELP2MAN) --name='Genomic Short-read Nucleotide Alignment Program' \
$(bindir)/gsnap |debian/filter.pl >$(mandir)/gsnap.1
$(HELP2MAN) --name='Tool for genome database creation for GMAP or GSNAP' \
$(utildir)/gmap_build |debian/filter.pl >$(mandir)/gmap_build.1
dh_auto_install
override_dh_install:
mkdir -p debian/$(DEB_SOURCE)/usr/bin
dh_install
for bin in `echo gmap gsnap gmap_build gmapl gsnapl; \
cd $(CURDIR)/debian/$(DEB_SOURCE)/usr/lib/$(DEB_SOURCE)/; \
ls -1 gmap*.* gsnap*.* `; do \
ln -s /usr/lib/gmap/$$bin debian/$(DEB_SOURCE)/usr/bin/$$bin; \
done
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
dh_auto_test --no-parallel
endif
override_dh_installexamples:
mkdir $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/examples
tar --sort=name \
--mtime="@${SOURCE_DATE_EPOCH}" \
--owner=root --group=root --numeric-owner \
--mode=go=rX,u+rw,a-s \
-cJf $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/examples/tests.tar.xz tests
|
