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Source: gmap
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Shaun Jackman <sjackman@debian.org>,
Andreas Tille <tille@debian.org>,
Alexandre Mestiashvili <mestia@debian.org>,
Nilesh Patra <npatra974@gmail.com>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
help2man,
libbz2-dev,
zlib1g-dev
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/gmap
Vcs-Git: https://salsa.debian.org/med-team/gmap.git
Homepage: http://research-pub.gene.com/gmap
Rules-Requires-Root: no
Package: gmap
Architecture: amd64 arm64 armel armhf i386 mips64el mipsel ppc64el riscv64
#not s390x
Depends: ${misc:Depends},
${perl:Depends},
${shlibs:Depends}
Description: spliced and SNP-tolerant alignment for mRNA and short reads
This package contains the programs GMAP and GSNAP as well as
utilities to manage genome databases in GMAP/GSNAP format.
GMAP (Genomic Mapping and Alignment Program) is a tool for aligning
EST, mRNA and cDNA sequences.
GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for
aligning single-end and paired-end transcriptome reads.
Both tools can use a database of
* known splice sites and identify novel splice sites.
* known single-nucleotide polymorphisms (SNPs).
GSNAP can align bisulfite-treated DNA.
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