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"""Base classes for match providers.
They are used by business objects to give
phrasewheels the ability to guess phrases.
Copyright (C) GNUMed developers
license: GPL
"""
############################################################################
# $Source: /sources/gnumed/gnumed/gnumed/client/pycommon/gmMatchProvider.py,v $
# $Id: gmMatchProvider.py,v 1.17 2006/05/25 22:13:30 ncq Exp $
__version__ = "$Revision: 1.17 $"
__author__ = "K.Hilbert <Karsten.Hilbert@gmx.net>, I.Haywood <ihaywood@gnu.org>, S.J.Tan <sjtan@bigpond.com>"
# std lib
import string, types, time, sys, re
# GNUmed
import gmPG, gmExceptions, gmLog
_log = gmLog.gmDefLog
#============================================================
class cMatchProvider:
"""Base class for match providing objects.
Match sources might be:
- database tables
- flat files
- previous input
- config files
- in-memory list created on the fly
"""
__threshold = {}
default_word_separators = re.compile('[- \t=+&:@]+')
default_ignored_chars = re.compile("[?!.'\\(){}\[\]<>~#*$%^_]+" + '"')
#--------------------------------------------------------
def __init__(self):
self.enableMatching()
self.enableLearning()
self.setThresholds()
self.setWordSeparators()
self.setIgnoredChars()
self._context_val = {}
#--------------------------------------------------------
# actions
#--------------------------------------------------------
def getMatches(self, aFragment = None):
"""Return matches according to aFragment and matching thresholds.
FIXME: design decision: we dont worry about data source changes
during the lifetime of a MatchProvider
FIXME: sort according to weight
FIXME: append _("*get all items*") on truncation
"""
# do we return matches at all ?
if not self.__deliverMatches:
return (False, [])
# sanity check
if aFragment is None:
_log.Log(gmLog.lErr, 'Cannot find matches without a fragment.')
raise ValueError, 'Cannot find matches without a fragment.'
# user explicitely wants all matches
if aFragment == "*":
return self.getAllMatches()
# case insensitivity
tmpFragment = string.lower(aFragment)
# remove ignored chars
tmpFragment = self.ignored_chars.sub('', tmpFragment)
# normalize word separators
tmpFragment = string.join(self.word_separators.split(tmpFragment), ' ')
# length in number of significant characters only
lngFragment = len(tmpFragment)
# order is important !
if lngFragment >= self.__threshold_substring:
return self.getMatchesBySubstr(tmpFragment)
elif lngFragment >= self.__threshold_word:
return self.getMatchesByWord(tmpFragment)
elif lngFragment >= self.__threshold_phrase:
return self.getMatchesByPhrase(tmpFragment)
else:
return (False, [])
#--------------------------------------------------------
def getAllMatches(self):
pass
#--------------------------------------------------------
def getMatchesByPhrase(self, aFragment):
pass
#--------------------------------------------------------
def getMatchesByWord(self, aFragment):
pass
#--------------------------------------------------------
def getMatchesBySubstr(self, aFragment):
pass
#--------------------------------------------------------
def increaseScore(self, anItem):
"""Increase the score/weighting for a particular item due to it being used."""
pass
#--------------------------------------------------------
def learn(self, anItem, aContext):
"""Add this item to the match source so we can find it next time around.
- aContext can be used to denote the context where to use this item for matching
- it is typically used to select a context sensitive item list during matching
"""
pass
#--------------------------------------------------------
def forget(self, anItem, aContext):
"""Remove this item from the match source if possible."""
pass
#--------------------------------------------------------
# configuration
#--------------------------------------------------------
def setThresholds(self, aPhrase = 1, aWord = 3, aSubstring = 5):
"""Set match location thresholds.
- the fragment passed to getMatches() must contain at least this many
characters before it triggers a match search at:
1) phrase_start - start of phrase (first word)
2) word_start - start of any word within phrase
3) in_word - _inside_ any word within phrase
"""
# sanity checks
if aSubstring < aWord:
_log.Log(gmLog.lErr, 'Setting substring threshold (%s) lower than word-start threshold (%s) does not make sense. Retaining original thresholds (%s:%s, respectively).' % (aSubstring, aWord, self.__threshold_substring, self.__threshold_word))
return (1==0)
if aWord < aPhrase:
_log.Log(gmLog.lErr, 'Setting word-start threshold (%s) lower than phrase-start threshold (%s) does not make sense. Retaining original thresholds (%s:%s, respectively).' % (aSubstring, aWord, self.__threshold_word, self.__threshold_phrase))
return (1==0)
# now actually reassign thresholds
self.__threshold_phrase = aPhrase
self.__threshold_word = aWord
self.__threshold_substring = aSubstring
return True
#--------------------------------------------------------
def setWordSeparators(self, separators = None):
if separators is None:
self.word_separators = cMatchProvider.default_word_separators
return 1
if separators == "":
_log.Log(gmLog.lErr, 'Not defining any word separators does not make sense ! Keeping previous setting.')
return None
try:
self.word_separators = re.compile(separators)
except:
_log.LogException('cannot compile word separators regex >>>%s<<<, keeping previous setting' % separators)
return None
return True
#--------------------------------------------------------
def setIgnoredChars(self, ignored_chars = None):
if ignored_chars is None:
self.ignored_chars = cMatchProvider.default_ignored_chars
return 1
try:
self.ignored_chars = re.compile(ignored_chars)
except:
_log.LogException('cannot compile ignored_chars regex >>>%s<<<, keeping previous setting' % ignored_chars)
return None
return True
#--------------------------------------------------------
def disableMatching(self):
"""Don't search for matches.
Useful if a slow network database link is detected, for example.
"""
self.__deliverMatches = False
#--------------------------------------------------------
def enableMatching(self):
self.__deliverMatches = True
#--------------------------------------------------------
def disableLearning(self):
"""Immediately stop learning new items."""
self.__learnNewItems = False
#--------------------------------------------------------
def enableLearning(self):
"""Immediately start learning new items."""
self.__learnNewItems = True
#--------------------------------------------------------
def set_context (self, name=None, val=None):
"""Set value to provide context information for matches.
The matching code may ignore it depending on its exact
implementation. Names and values of the context depend
on what is being matched.
"""
if name is None:
return False
self._context_val[name] = val
return True
#------------------------------------------------------------
# usable instances
#------------------------------------------------------------
class cMatchProvider_FixedList(cMatchProvider):
"""Match provider where all possible options can be held
in a reasonably sized, pre-allocated list.
"""
def __init__(self, aSeq = None):
"""aSeq must be a list of dicts. Each dict must have the keys (data, label, weight)
"""
if not type(aSeq) in [types.ListType, types.TupleType]:
_log.Log(gmLog.lErr, 'fixed list match provider argument must be a list or tuple of dicts')
raise gmExceptions.ConstructorError
self.__items = aSeq
cMatchProvider.__init__(self)
#--------------------------------------------------------
# internal matching algorithms
#
# if we end up here:
# - aFragment will not be "None"
# - aFragment will be lower case
# - we _do_ deliver matches (whether we find any is a different story)
#--------------------------------------------------------
def getMatchesByPhrase(self, aFragment):
"""Return matches for aFragment at start of phrases."""
matches = []
# look for matches
for item in self.__items:
# at start of phrase, that is
if string.find(string.lower(item['label']), aFragment) == 0:
matches.append(item)
# no matches found
if len(matches) == 0:
return (False, [])
matches.sort(self.__cmp_items)
return (True, matches)
#--------------------------------------------------------
def getMatchesByWord(self, aFragment):
"""Return matches for aFragment at start of words inside phrases."""
matches = []
# look for matches
for item in self.__items:
pos = string.find(string.lower(item['label']), aFragment)
# found at start of phrase
if pos == 0:
matches.append(item)
# found as a true substring
elif pos > 0:
# but use only if substring is at start of a word
if (item['label'])[pos-1] == ' ':
matches.append(item)
# no matches found
if len(matches) == 0:
return (False, [])
matches.sort(self.__cmp_items)
return (True, matches)
#--------------------------------------------------------
def getMatchesBySubstr(self, aFragment):
"""Return matches for aFragment as a true substring."""
matches = []
# look for matches
for item in self.__items:
if string.find(string.lower(item['label']), aFragment) != -1:
matches.append(item)
# no matches found
if len(matches) == 0:
return (False, [])
matches.sort(self.__cmp_items)
return (True, matches)
#--------------------------------------------------------
def getAllMatches(self):
"""Return all items."""
matches = self.__items
# no matches found
if len(matches) == 0:
return (False, [])
matches.sort(self.__cmp_items)
return (True, matches)
#--------------------------------------------------------
def setItems(self, items):
"""items must be a list of dicts. Each dict must have the keys (data, label, weight)"""
self.__items = items
#--------------------------------------------------------
def __cmp_items(self, item1, item2):
"""Compare items based on weight."""
# do it the wrong way round to do sorting/reversing at once
if item1['weight'] < item2['weight']:
return 1
elif item1['weight'] > item2['weight']:
return -1
else:
return 0
# ===========================================================
class cMatchProvider_Func(cMatchProvider):
"""Match provider which searches matches
in the results of a function call.
"""
def __init__(self, get_candidates = None):
"""get_candidates() must return a list of strings."""
if get_candidates is None:
_log.Log(gmLog.lErr, 'must define function to retrieve match candidates list')
raise gmException.ConstructorError, 'must define match candidates function'
self._get_candidates = get_candidates
cMatchProvider.__init__(self)
#--------------------------------------------------------
# internal matching algorithms
#
# if we end up here:
# - aFragment will not be "None"
# - aFragment will be lower case
# - we _do_ deliver matches (whether we find any is a different story)
#--------------------------------------------------------
def getMatchesByPhrase(self, aFragment):
"""Return matches for aFragment at start of phrases."""
print "getting phrase matches"
matches = []
candidates = self._get_candidates()
# look for matches
for candidate in candidates:
# at start of phrase, that is
if aFragment.startswith(candidate['label'].lower()):
matches.append(candidate)
# no matches found
if len(matches) == 0:
return (False, [])
matches.sort(self.__cmp_candidates)
return (True, matches)
#--------------------------------------------------------
def getMatchesByWord(self, aFragment):
"""Return matches for aFragment at start of words inside phrases."""
print "getting word matches"
matches = []
candidates = self._get_candidates()
# look for matches
for candidate in candidates:
pos = candidate['label'].lower().find(aFragment)
# pos = string.find(string.lower(candidate['label']), aFragment)
# found as a true substring
# but use only if substring is at start of a word
# FIXME: use word seps
if (pos == 0) or (candidate['label'][pos-1] == ' '):
matches.append(candidate)
# no matches found
if len(matches) == 0:
return (False, [])
matches.sort(self.__cmp_candidates)
return (True, matches)
#--------------------------------------------------------
def getMatchesBySubstr(self, aFragment):
"""Return matches for aFragment as a true substring."""
matches = []
candidates = self._get_candidates()
# look for matches
for candidate in candidates:
if candidate['label'].lower().find(aFragment) != -1:
# if string.find(string.lower(candidate['label']), aFragment) != -1:
matches.append(candidate)
# no matches found
if len(matches) == 0:
return (False, [])
matches.sort(self.__cmp_candidates)
return (True, matches)
#--------------------------------------------------------
def getAllMatches(self):
"""Return all candidates."""
return self._get_candidates()
#--------------------------------------------------------
def __cmp_candidates(self, candidate1, candidate2):
"""naive ordering"""
return 0
# FIXME: do ordering
# if candidate1 < candidate2:
# return -1
# if candidate1 == candidate2:
# return 0
# return 1
# ===========================================================
class cMatchProvider_SQL2(cMatchProvider):
"""Match provider which searches matches
in possibly several database tables.
"""
def __init__(self, service = 'default', queries = None):
if type(queries) != types.ListType:
queries = [str(queries)]
self._service = service
self._queries = queries
self._context_vals = {}
cMatchProvider.__init__(self)
#--------------------------------------------------------
def set_context (self, name, val):
"""Set value to provide context information for matches.
The matching code may ignore it depending on its exact
implementation. Names and values of the context depend
on what is being matched.
"""
self._context_vals[name] = val
#--------------------------------------------------------
# internal matching algorithms
#
# if we end up here:
# - aFragment will not be "None"
# - aFragment will be lower case
# - we _do_ deliver matches (whether we find any is a different story)
#--------------------------------------------------------
def getMatchesByPhrase(self, aFragment):
"""Return matches for aFragment at start of phrases."""
fragment_condition = "ilike %(fragment)s"
self._context_vals['fragment'] = "%s%%" % aFragment
return self.__find_matches(fragment_condition)
#--------------------------------------------------------
def getMatchesByWord(self, aFragment):
"""Return matches for aFragment at start of words inside phrases."""
fragment_condition = "~* %(fragment)s"
self._context_vals['fragment'] = "( %s)|(^%s)" % (aFragment, aFragment)
return self.__find_matches(fragment_condition)
#--------------------------------------------------------
def getMatchesBySubstr(self, aFragment):
"""Return matches for aFragment as a true substring."""
fragment_condition = "ilike %(fragment)s"
self._context_vals['fragment'] = "%%%s%%" % aFragment
return self.__find_matches(fragment_condition)
#--------------------------------------------------------
def getAllMatches(self):
"""Return all items."""
return self.getMatchesBySubstr('')
#--------------------------------------------------------
def __find_matches(self, fragment_condition):
matches = []
for query in self._queries:
query = query % {'fragment_condition': fragment_condition}
rows = gmPG.run_ro_query(self._service, query, None, self._context_vals)
if rows is None:
_log.Log(gmLog.lErr, 'cannot check for matches with %s' % query)
_log.Log(gmLog.lErr, 'context: %s' % self._context_vals)
return (False, [])
# no matches found: try next query
if len(rows) == 0:
continue
for row in rows:
matches.append({'data': row[0], 'label': row[1], 'weight': 0})
return (True, matches)
# none found whatsoever
return (False, [])
#--------------------------------------------------------
def __cmp_items(self, item1, item2):
"""naive ordering"""
if item1 < item2:
return -1
if item1 == item2:
return 0
return 1
#------------------------------------------------------------
class cMatchProvider_SQL(cMatchProvider):
"""Match provider which searches matches
in possibly several database tables.
"""
def __init__(self, source_defs, score_def = []):
"""
source_defs is a list of dictionaries of (pk, column, table, extra conditions, limit)
column: the column containing the string to be matched
pk: the primary key's column name
table: the table (in reality will nearly always be a view)
limit: the max. number of returned rows
extra conditions: a dictionary, where keys are context variables, values are
SQL expressions applying that context to the query
result: the result string where it differs from column
"""
self.dbpool = gmPG.ConnectionPool()
# sanity check table connections
self.srcs = []
for src_def in source_defs:
# FIXME: testing every table at load time is going to get slow
# that remains to be seen
conn = self.dbpool.GetConnection(src_def['service'])
if conn is None:
self.__close_sources()
raise gmExceptions.ConstructorError, 'cannot connect to source service [%s]' % src_def['service']
curs = conn.cursor()
cmd = "select %s from %s limit 1" % (src_def['column'], src_def['table'])
if not gmPG.run_query(curs, None, cmd):
curs.close()
self.__close_sources()
raise gmExceptions.ConstructorError, 'cannot access [%s.%s] in service [%s]' % (src_def['table'], src_def['column'], src_def['service'])
if not src_def.has_key('pk'):
pk = gmPG.get_pkey_name(curs, src_def['table'])
if pk is None:
src_def['pk'] = "oid"
else:
src_def['pk'] = pk
curs.close()
src_def['conn'] = conn
self.srcs.append(src_def)
_log.Log(gmLog.lData, 'valid match source: %s' % src_def)
if score_def <> []:
rw_conn = self.dbpool.GetConnection(score_def['service'], readonly = 0)
if rw_conn is None:
self.__close_sources()
raise gmExceptions.ConstructorError, 'cannot connect to score storage service [%s]' % score_def['service']
rw_curs = rw_conn.cursor()
cmd = "select %s, cookie, user, score from %s limit 1" % (score_def['column'], score_def['table'])
if not gmPG.run_query(rw_curs, None, cmd):
rw_curs.close()
rw_conn.close()
self.__close_sources()
raise gmExceptions.ConstructorError, 'cannot access [%s.{%s/gmpw_user/gmpw_score}] in service [%s]' % (score_def['table'], score_def['column'], score_def['service'])
if not score_def.has_key('pk'):
pk = gmPG.get_pkey_name(rw_curs, score_def['table'])
if pk is None:
score_def['pk'] = "oid"
else:
score_def['pk'] = pk
rw_curs.close()
score_def['conn'] = rw_conn
# score_def['query'] = "select %s, %s from %s where %s" % (
# src_def['pk'],
# src_def['column'],
# src_def['table'],
# src_def['column'])
self.score_def = score_def
_log.Log(gmLog.lData, 'valid score storage target: %s' % score_def)
cMatchProvider.__init__(self)
#--------------------------------------------------------
def __close_sources(self):
for src in self.srcs:
self.dbpool.ReleaseConnection(src['service'])
#--------------------------------------------------------
# internal matching algorithms
#
# if we end up here:
# - aFragment will not be "None"
# - aFragment will be lower case
# - we _do_ deliver matches (whether we find any is a different story)
#--------------------------------------------------------
def getMatchesByPhrase(self, aFragment):
"""Return matches for aFragment at start of phrases."""
operator = "ilike"
fragment = "%s%%" % aFragment
return self.__find_matches(operator, fragment)
#--------------------------------------------------------
def getMatchesByWord(self, aFragment):
"""Return matches for aFragment at start of words inside phrases."""
operator = "~*"
fragment = "( %s)|(^%s)" % (aFragment, aFragment)
return self.__find_matches(operator, fragment)
#--------------------------------------------------------
def getMatchesBySubstr(self, aFragment):
"""Return matches for aFragment as a true substring."""
operator = "ilike"
fragment = "%%%s%%" % aFragment
return self.__find_matches(operator, fragment)
#--------------------------------------------------------
def getAllMatches(self):
"""Return all items."""
return self.getMatchesBySubstr('')
#--------------------------------------------------------
def __find_matches(self, search_operator, aFragment):
matches = []
for src in self.srcs:
curs = src['conn'].cursor()
# FIXME: deal with gmpw_score...
values = [aFragment]
# process any extra conditions defined for this source
ctxt_where = ''
if src.has_key('extra conditions'):
# loop over name and condition for contexts
for ctxt_name, ctxt_condition in src['extra conditions'].iteritems():
# value known for this context condition ?
if self._context_val.has_key(ctxt_name) and self._context_val[ctxt_name]:
# add context condition
ctxt_where += " and (%s)" % ctxt_condition
# remember value for condition
values.append(self._context_val[ctxt_name])
# do we have any contexts that always apply ?
if src['extra conditions'].has_key('default'):
ctxt_where += " and (%s)" % src['extra conditions']['default']
if not src.has_key ('result'):
src['result'] = src['column']
cmd = "select %s, %s from %s where %s %s %%s %s" % (
src['pk'],
src['result'],
src['table'],
src['column'],
search_operator,
ctxt_where
)
if not gmPG.run_query(curs, None, cmd, values):
curs.close()
_log.Log(gmLog.lErr, 'cannot check for matches in %s' % src)
return (False, [])
matching_rows = curs.fetchall()
curs.close()
for row in matching_rows:
matches.append({'data': row[0], 'label': row[1], 'weight':0})
# no matches found
if len(matches) == 0:
return (False, [])
matches.sort(self.__cmp_items)
return (True, matches)
#--------------------------------------------------------
def __cmp_items(self, item1, item2):
"""naive ordering"""
if item1 < item2:
return -1
if item1 == item2:
return 0
return 1
# FUTURE: a cMatchProvider_LDAP
#================================================================
if __name__ == '__main__':
pass
#================================================================
# $Log: gmMatchProvider.py,v $
# Revision 1.17 2006/05/25 22:13:30 ncq
# - robustify set_context()
#
# Revision 1.16 2006/05/01 18:46:05 ncq
# - cleanup
#
# Revision 1.15 2005/06/14 18:54:40 ncq
# - don't sort in SQL2 matcher - queries should ORDER BY
#
# Revision 1.14 2005/06/12 21:20:55 ncq
# - make SQL2 match provider more robust regarding query list
#
# Revision 1.13 2005/06/12 21:16:55 ncq
# - make SQL2 match provider accept a query list
#
# Revision 1.12 2005/06/10 17:07:34 cfmoro
# Fixed set_context in SQL2
#
# Revision 1.11 2005/06/08 01:27:12 cfmoro
# Renamed function to make parent set_context work
#
# Revision 1.10 2005/06/07 10:16:37 ncq
# - setContext -> set_context
#
# Revision 1.9 2005/05/08 21:40:57 ncq
# - cleanup
#
# Revision 1.8 2005/04/14 18:24:57 ncq
# - some cleanup of funky magic so we are faster
#
# Revision 1.7 2005/04/11 18:00:54 ncq
# - cleanup
#
# Revision 1.6 2005/03/14 14:35:27 ncq
# - add match provider class cMatchProvider_Func which pulls
# match candidates through a function
#
# Revision 1.5 2004/07/17 21:08:51 ncq
# - gmPG.run_query() now has a verbosity parameter, so use it
#
# Revision 1.4 2004/05/02 22:54:43 ncq
# - cleanup
#
# Revision 1.3 2004/04/30 09:10:57 ncq
# - label needs to be str()ed in list.append()
#
# Revision 1.2 2004/03/10 12:56:01 ihaywood
# fixed sudden loss of main.shadow
# more work on referrals,
#
# Revision 1.1 2004/02/25 09:30:13 ncq
# - moved here from python-common
#
# Revision 1.13 2004/01/12 13:10:27 ncq
# - remove debugging code
#
# Revision 1.12 2004/01/06 10:02:47 ncq
# - add _SQL2 match provider that operates on queries rather than tables/columns
#
# Revision 1.11 2003/12/29 16:28:04 uid66147
# - I think we got the indentation level wrong when
# applying the extra condition default context
#
# Revision 1.10 2003/11/20 08:55:05 ncq
# - some internal cleanup/renaming
#
# Revision 1.9 2003/11/20 02:16:03 sjtan
#
# make __context_val in base class gmMatchProvider protected instead of class private, so subclasses can
# access it.
#
# Revision 1.8 2003/11/20 01:37:05 sjtan
#
# syntax correction.
#
# Revision 1.7 2003/11/20 00:33:12 ncq
# - improve comments on extra conditions in __find_matches()
#
# Revision 1.6 2003/11/19 23:18:37 ncq
# - some cleanup
#
|