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"""GNUmed coding related widgets."""
#================================================================
__author__ = 'karsten.hilbert@gmx.net'
__license__ = 'GPL v2 or later (details at http://www.gnu.org)'
# stdlib
import logging, sys
# 3rd party
import wx
# GNUmed
if __name__ == '__main__':
sys.path.insert(0, '../../')
from Gnumed.business import gmCoding
from Gnumed.pycommon import gmTools
from Gnumed.pycommon import gmMatchProvider
from Gnumed.wxpython import gmListWidgets
from Gnumed.wxpython import gmPhraseWheel
_log = logging.getLogger('gm.ui')
#================================================================
def browse_data_sources(parent=None):
if parent is None:
parent = wx.GetApp().GetTopWindow()
#------------------------------------------------------------
def refresh(lctrl):
srcs = gmCoding.get_data_sources()
items = [ [
u'%s (%s): %s' % (
s['name_short'],
gmTools.coalesce(s['lang'], u'?'),
s['version']
),
s['name_long'].split(u'\n')[0].split(u'\r')[0],
s['source'].split(u'\n')[0].split(u'\r')[0],
gmTools.coalesce(s['description'], u'').split(u'\n')[0].split(u'\r')[0],
s['pk']
] for s in srcs ]
lctrl.set_string_items(items)
lctrl.set_data(srcs)
#------------------------------------------------------------
gmListWidgets.get_choices_from_list (
parent = parent,
msg = _('Sources of reference data registered in GNUmed.'),
caption = _('Showing data sources'),
columns = [ _('System'), _('Name'), _('Source'), _('Description'), '#' ],
single_selection = True,
can_return_empty = False,
ignore_OK_button = True,
refresh_callback = refresh
# edit_callback=None,
# new_callback=None,
# delete_callback=None,
# left_extra_button=None,
# middle_extra_button=None,
# right_extra_button=None
)
#----------------------------------------------------------------
class cDataSourcePhraseWheel(gmPhraseWheel.cPhraseWheel):
def __init__(self, *args, **kwargs):
gmPhraseWheel.cPhraseWheel.__init__(self, *args, **kwargs)
query = u"""
SELECT DISTINCT ON (list_label)
pk
AS data,
name_short || ' (' || version || ')'
AS field_label,
name_short || ' ' || version || ' (' || name_long || ')'
AS list_label
FROM
ref.data_source
WHERE
name_short %(fragment_condition)s
OR
name_long %(fragment_condition)s
ORDER BY list_label
LIMIT 50
"""
mp = gmMatchProvider.cMatchProvider_SQL2(queries = query)
mp.setThresholds(1, 2, 4)
# mp.word_separators = '[ \t=+&:@]+'
self.SetToolTipString(_('Select a data source / coding system.'))
self.matcher = mp
self.selection_only = True
#================================================================
def browse_coded_terms(parent=None, coding_systems=None, languages=None):
if parent is None:
parent = wx.GetApp().GetTopWindow()
#------------------------------------------------------------
def refresh(lctrl):
coded_terms = gmCoding.get_coded_terms (
coding_systems = coding_systems,
languages = languages,
order_by = u'term, coding_system, code'
)
items = [ [
ct['term'],
ct['code'],
ct['coding_system'],
gmTools.coalesce(ct['lang'], u''),
ct['version'],
ct['coding_system_long']
] for ct in coded_terms ]
lctrl.set_string_items(items)
lctrl.set_data(coded_terms)
#------------------------------------------------------------
gmListWidgets.get_choices_from_list (
parent = parent,
msg = _('Coded terms known to GNUmed (may take a while to load).'),
caption = _('Showing coded terms.'),
columns = [ _('Term'), _('Code'), _('System'), _('Language'), _('Version'), _(u'Coding system details') ],
single_selection = True,
can_return_empty = True,
ignore_OK_button = True,
refresh_callback = refresh
# edit_callback=None,
# new_callback=None,
# delete_callback=None,
# left_extra_button=None,
# middle_extra_button=None,
# right_extra_button=None
)
#================================================================
class cGenericCodesPhraseWheel(gmPhraseWheel.cMultiPhraseWheel):
def __init__(self, *args, **kwargs):
super(cGenericCodesPhraseWheel, self).__init__(*args, **kwargs)
query = u"""
SELECT
-- DISTINCT ON (list_label)
data,
list_label,
field_label
FROM (
SELECT
pk_generic_code
AS data,
(code || ' (' || coding_system || '): ' || term || ' (' || version || coalesce(' - ' || lang, '') || ')')
AS list_label,
code AS
field_label
FROM
ref.v_coded_terms
WHERE
term %(fragment_condition)s
OR
code %(fragment_condition)s
%(ctxt_system)s
%(ctxt_lang)s
) AS applicable_codes
ORDER BY list_label
LIMIT 30
"""
ctxt = {
'ctxt_system': { # must be a TUPLE !
'where_part': u'AND coding_system IN %(system)s',
'placeholder': u'system'
},
'ctxt_lang': {
'where_part': u'AND lang = %(lang)s',
'placeholder': u'lang'
}
}
mp = gmMatchProvider.cMatchProvider_SQL2(queries = query, context = ctxt)
mp.setThresholds(2, 4, 5)
mp.word_separators = '[ \t=+&/:-]+'
#mp.print_queries = True
self.phrase_separators = ';'
self.selection_only = False # not sure yet how this fares with multi-phrase input
self.SetToolTipString(_('Select one or more codes that apply.'))
self.matcher = mp
self.add_callback_on_lose_focus(callback = self.__on_losing_focus)
#------------------------------------------------------------
def __on_losing_focus(self):
self._adjust_data_after_text_update()
if self.GetValue().strip() == u'':
return
if len(self.data) != len(self.displayed_strings):
self.display_as_valid(valid = False, partially_invalid = True)
return
self.display_as_valid(valid = True)
#------------------------------------------------------------
def _get_data_tooltip(self):
if len(self.data) == 0:
return u''
return u';\n'.join([ i['list_label'] for i in self.data.values() ]) + u';'
#------------------------------------------------------------
def generic_linked_codes2item_dict(self, codes):
if len(codes) == 0:
return u'', {}
code_dict = {}
val = u''
for code in codes:
list_label = u'%s (%s): %s (%s - %s)' % (
code['code'],
code['name_short'],
code['term'],
code['version'],
code['lang']
)
field_label = code['code']
code_dict[field_label] = {'data': code['pk_generic_code'], 'field_label': field_label, 'list_label': list_label}
val += u'%s; ' % field_label
return val.strip(), code_dict
#================================================================
# main
#----------------------------------------------------------------
if __name__ == '__main__':
if len(sys.argv) < 2:
sys.exit()
if sys.argv[1] != 'test':
sys.exit()
from Gnumed.pycommon import gmI18N
gmI18N.activate_locale()
gmI18N.install_domain()
from Gnumed.pycommon import gmPG2
#--------------------------------------------------------
def test_generic_codes_prw():
gmPG2.get_connection()
app = wx.PyWidgetTester(size = (500, 40))
pw = cGenericCodesPhraseWheel(app.frame, -1)
#pw.set_context(context = u'zip', val = u'04318')
app.frame.Show(True)
app.MainLoop()
#--------------------------------------------------------
test_generic_codes_prw()
#================================================================
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