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# -*- coding: utf-8 -*-
"""GNUmed macro primitives.
This module implements functions a macro can legally use.
"""
#=====================================================================
__author__ = "K.Hilbert <karsten.hilbert@gmx.net>"
import sys
import time
import random
import types
import logging
import os
import io
import datetime
import urllib.parse
import codecs
import re as regex
import wx
if __name__ == '__main__':
sys.path.insert(0, '../../')
from Gnumed.pycommon import gmLog2
from Gnumed.pycommon import gmI18N
if __name__ == '__main__':
gmI18N.activate_locale()
gmI18N.install_domain()
from Gnumed.pycommon import gmGuiBroker
from Gnumed.pycommon import gmTools
from Gnumed.pycommon import gmBorg
from Gnumed.pycommon import gmExceptions
from Gnumed.pycommon import gmCfg2
from Gnumed.pycommon import gmDateTime
from Gnumed.pycommon import gmMimeLib
from Gnumed.pycommon import gmShellAPI
from Gnumed.pycommon import gmCrypto
from Gnumed.business import gmPerson
from Gnumed.business import gmStaff
from Gnumed.business import gmDemographicRecord
from Gnumed.business import gmMedication
from Gnumed.business import gmPathLab
from Gnumed.business import gmPersonSearch
from Gnumed.business import gmVaccination
from Gnumed.business import gmKeywordExpansion
from Gnumed.business import gmPraxis
from Gnumed.wxpython import gmGuiHelpers
from Gnumed.wxpython import gmNarrativeWorkflows
from Gnumed.wxpython import gmPatSearchWidgets
from Gnumed.wxpython import gmPersonContactWidgets
from Gnumed.wxpython import gmPlugin
from Gnumed.wxpython import gmEMRStructWidgets
from Gnumed.wxpython import gmEncounterWidgets
from Gnumed.wxpython import gmListWidgets
from Gnumed.wxpython import gmDemographicsWidgets
from Gnumed.wxpython import gmDocumentWidgets
from Gnumed.wxpython import gmKeywordExpansionWidgets
from Gnumed.wxpython import gmPraxisWidgets
from Gnumed.wxpython import gmAddressWidgets
_log = logging.getLogger('gm.scripting')
_cfg = gmCfg2.gmCfgData()
#=====================================================================
# values for the following placeholders must be injected from the outside before
# using them, in use they must conform to the "placeholder::::max length" syntax,
# as long as they resolve to None they return their respective names so the
# developers can know which placeholder was not set
known_injectable_placeholders = [
'form_name_long',
'form_name_short',
'form_version',
'form_version_internal',
'form_last_modified'
]
# the following must satisfy the pattern "$<name::args::(optional) max string length>$" when used
__known_variant_placeholders = {
# generic:
'free_text': u"""show a dialog for entering some free text:
args: <message>//<preset>
<message>: shown in input dialog, must not contain either
of '::' and whatever the arguments divider is
set to (default '//'),
<preset>: whatever to initially show inside the input field,
caches input per <message>""",
'text_snippet': """a text snippet, taken from the keyword expansion mechanism:
args: <snippet name>//<template>""",
'data_snippet': """a binary snippet, taken from the keyword expansion mechanism:
args: <snippet name>//<template>//<optional target mime type>//<optional target extension>
returns full path to an exported copy of the
data rather than the data itself,
template: string template for outputting the path
target mime type: a mime type into which to convert the image, no conversion if not given
target extension: target file name extension, derived from target mime type if not given
""",
u'qrcode': u"""generate QR code file for a text snippet:
returns: path to QR code png file
args: <text>//<template>
text: utf8 text, will always be encoded in 'binary' mode with utf8 as encoding
template: %s-template into which to insert the QR code png file path
""",
# text manipulation
'range_of': """select range of enclosed text (note that this cannot take into account non-length characters such as enclosed LaTeX code
args: <enclosed text>
""",
'if_not_empty': """format text based on template if not empty
args: <possibly-empty-text>//<template-if-not-empty>//<alternative-text-if-empty>
""",
u'tex_escape': u"args: string to escape, mostly obsolete now",
u'url_escape': u"""Escapes a string suitable for use as _data_ in an URL
args: text to escape
""",
# internal state
'ph_cfg': u"""Set placeholder handler options.
args: option name//option value//macro return string
option names:
ellipsis: what to use as ellipsis (if anything) when
shortening strings or string regions, setting the
value to NONE will switch off ellipis handling,
default is switched off
argumentsdivider: what to use as divider when splitting
an argument string into parts, default is '//',
note that the 'config' placeholder will ALWAYS
use '//' to split its argument string, regardless
of which setting of <argumentsdivider> is in effect,
use DEFAULT to reset this setting back to the
default '//'
encoding: the encoding in which data emitted by GNUmed
as placeholder replacement needs to be valid in,
note that GNUmed will still emit unicode to replacement
consumers but it will ensure the data emitted _can_
be encoded by this target encoding (by roundtripping
unicode-encoding-unicode)
valid from where this placeholder is located at
until further change,
use DEFAULT to reset encoding back to the default
which is to not ensure compatibility,
if the encoding ends in '-strict' then the placeholder
replacement will fail if the roundtrip fails
""",
u'if_debugging': u"""set text based on whether debugging is active
args: <text-if-debugging>//<text-if-not-debugging>
""",
'today': "args: strftime format",
'gender_mapper': """maps gender of patient to a string:
args: <value when person is male> // <is female> // <is other>
eg. 'male//female//other'
or: 'Lieber Patient//Liebe Patientin'""",
'client_version': "the version of the current client as a string (no 'v' in front)",
'gen_adr_street': """part of a generic address, cached, selected from database:
args: optional template//optional selection message//optional cache ID
template: %s-style formatting template
message: text message shown in address selection list
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'gen_adr_number': """part of a generic address, cached, selected from database:
args: optional template//optional selection message//optional cache ID
template: %s-style formatting template
message: text message shown in address selection list
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'gen_adr_subunit': """part of a generic address, cached, selected from database:
args: optional template//optional selection message//optional cache ID
template: %s-style formatting template
message: text message shown in address selection list
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'gen_adr_location': """part of a generic address, cached, selected from database:
args: optional template//optional selection message//optional cache ID
template: %s-style formatting template
message: text message shown in address selection list
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'gen_adr_suburb': """part of a generic address, cached, selected from database:
args: optional template//optional selection message//optional cache ID
template: %s-style formatting template
message: text message shown in address selection list
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'gen_adr_postcode': """part of a generic address, cached, selected from database:
args: optional template//optional selection message//optional cache ID
template: %s-style formatting template
message: text message shown in address selection list
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'gen_adr_region': """part of a generic address, cached, selected from database:
args: optional template//optional selection message//optional cache ID
template: %s-style formatting template
message: text message shown in address selection list
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'gen_adr_country': """part of a generic address, cached, selected from database:
args: optional template//optional selection message//optional cache ID
template: %s-style formatting template
message: text message shown in address selection list
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'receiver_name': """the receiver name, cached, selected from database:
receivers are presented for selection from people/addresses related
to the patient in some way or other,
args: optional template//optional cache ID
template: %s-style formatting template
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'receiver_street': """part of a receiver address, cached, selected from database:
receivers are presented for selection from people/addresses related
to the patient in some way or other,
args: optional template//optional cache ID
template: %s-style formatting template
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'receiver_number': """part of a receiver address, cached, selected from database:
receivers are presented for selection from people/addresses related
to the patient in some way or other,
args: optional template//optional cache ID
template: %s-style formatting template
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'receiver_subunit': """part of a receiver address, cached, selected from database:
receivers are presented for selection from people/addresses related
to the patient in some way or other,
args: optional template//optional cache ID
template: %s-style formatting template
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'receiver_location': """part of a receiver address, cached, selected from database:
receivers are presented for selection from people/addresses related
to the patient in some way or other,
args: optional template//optional cache ID
template: %s-style formatting template
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'receiver_suburb': """part of a receiver address, cached, selected from database:
receivers are presented for selection from people/addresses related
to the patient in some way or other,
args: optional template//optional cache ID
template: %s-style formatting template
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'receiver_postcode': """part of a receiver address, cached, selected from database:
receivers are presented for selection from people/addresses related
to the patient in some way or other,
args: optional template//optional cache ID
template: %s-style formatting template
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'receiver_region': """part of a receiver address, cached, selected from database:
receivers are presented for selection from people/addresses related
to the patient in some way or other,
args: optional template//optional cache ID
template: %s-style formatting template
cache ID: used to differentiate separate cached invocations of this placeholder
""",
'receiver_country': """part of a receiver address, cached, selected from database:
receivers are presented for selection from people/addresses related
to the patient in some way or other,
args: optional template//optional cache ID
template: %s-style formatting template
cache ID: used to differentiate separate cached invocations of this placeholder
""",
# patient demographics:
'name': "args: template for name parts arrangement",
'date_of_birth': "args: strftime date/time format directive",
'patient_address': "args: <type of address>//<optional formatting template>",
'adr_street': "args: <type of address>, cached per type",
'adr_number': "args: <type of address>, cached per type",
'adr_subunit': "args: <type of address>, cached per type",
'adr_location': "args: <type of address>, cached per type",
'adr_suburb': "args: <type of address>, cached per type",
'adr_postcode': "args: <type of address>, cached per type",
'adr_region': "args: <type of address>, cached per type",
'adr_country': "args: <type of address>, cached per type",
'patient_comm': "args: <comm channel type as per database>//<%(field)s-template>",
'patient_vcf': """returns path to VCF for current patient
args: <template>
template: %s-template for path
""",
'patient_gdt': """returns path to GDT for current patient
args: <template>
template: %s-template for path
""",
u'patient_mcf': u"""returns MECARD for current patient
args: <format>//<template>
format: fmt=qr|mcf|txt
qr: QR code png file path,
mcf: MECARD .mcf file path,
txt: MECARD string,
default - if omitted - is "txt",
template: tmpl=<%s-template string>, "%s" if omitted
""",
'patient_tags': "args: <%(field)s-template>//<separator>",
#u'patient_tags_table': u"no args",
'patient_photo': """outputs URL to exported patient photo (cached per mime type and extension):
args: <template>//<optional target mime type>//<optional target extension>,
returns full path to an exported copy of the
image rather than the image data itself,
returns u'' if no mugshot available,
template: string template for outputting the path
target mime type: a mime type into which to convert the image, no conversion if not given
target extension: target file name extension, derived from target mime type if not given""",
'external_id': "args: <type of ID>//<issuer of ID>",
# clinical record related:
'soap': "get all of SOAPU/ADMIN, no template in args needed",
'soap_s': "get subset of SOAPU/ADMIN, no template in args needed",
'soap_o': "get subset of SOAPU/ADMIN, no template in args needed",
'soap_a': "get subset of SOAPU/ADMIN, no template in args needed",
'soap_p': "get subset of SOAPU/ADMIN, no template in args needed",
'soap_u': "get subset of SOAPU/ADMIN, no template in args needed",
'soap_admin': "get subset of SOAPU/ADMIN, no template in args needed",
'progress_notes': """get progress notes:
args: categories//template
categories: string with 'soapu '; ' ' == None == admin
template: u'something %s something' (do not include // in template !)""",
'soap_for_encounters': """lets the user select a list of encounters for which:
LaTeX formatted progress notes are emitted,
args: soap categories // strftime date format""",
'soap_by_issue': """lets the user select a list of issues and then SOAP entries from those issues:
args: soap categories // strftime date format // template""",
'soap_by_episode': """lets the user select a list of episodes and then SOAP entries from those episodes:
args: soap categories // strftime date format // template""",
'emr_journal': """returns EMR journal view entries:
args format: <categories>//<template>//<line length>//<time range>//<target format>
categories: string with any of "s", "o", "a", "p", "u", " "; (" " == None == admin category)
template: something %s something else (Do not include // in the template !)
line length: the maximum length of individual lines, not the total placeholder length
time range: the number of weeks going back in time if given as a single number, or else it must be a valid PostgreSQL interval definition (w/o the ::interval)""",
'substance_abuse': """returns substance abuse entries:
args: line template
""",
'current_meds': """returns current medications:
args: line template//<select>
<select>: if this is present the user will be asked which meds to export""",
'current_meds_for_rx': """formats substance intakes either by substance (non-product intakes) or by producdt (once per product intake, even if multi-component):
args: <line template>
<line_template>: template into which to insert each intake, keys from
clin.v_substance_intakes, special additional keys:
%(contains)s -- list of components
%(amount2dispense)s -- how much/many to dispense""",
'current_meds_AMTS': """emit LaTeX longtable lines with appropriate page breaks:
also creates per-page AMTS QR codes and sets the
following internal placeholders:
amts_png_file_1
amts_png_file_2
amts_png_file_3
amts_data_file_1
amts_data_file_2
amts_data_file_3
amts_png_file_current_page
amts_data_file_utf8
amts_png_file_utf8
the last of which contains the LaTeX command \\thepage (such that
LaTeX can use this in, say, page headers) but omitting the .png
(for which LaTeX will look by itself),
note that you will have to use the 2nd- or 3rd-pass placeholder
format if you plan to insert the above because they will only be
available by first (or second) pass processing of the initial
placeholder "current_meds_AMTS"
""",
'current_meds_AMTS_enhanced': """emit LaTeX longtable lines with appropriate page breaks:
this returns the same content as current_meds_AMTS except that
it does not truncate output data whenever possible
""",
'current_meds_table': "emits a LaTeX table, no arguments",
'current_meds_notes': "emits a LaTeX table, no arguments",
'lab_table': "emits a LaTeX table, no arguments",
'test_results': "args: <%(field)s-template>//<date format>//<line separator (EOL)>",
'most_recent_test_results': """most recent test results formatted as defined in <template>:
args: <dfmt=...>//<tmpl=...>//<sep=...>
<dfmt=...>: strftime format string for test result timestamps,
<tmpl=...>: target format specific %s-template, applied to each test result
<sep=...>: line separator, can be a Python string escape, such as \n
""",
'latest_vaccs_table': "emits a LaTeX table, no arguments",
'vaccination_history': "args: <%(field)s-template//date format> to format one vaccination per line",
'allergy_state': "no arguments",
'allergies': "args: line template, one allergy per line",
'allergy_list': "args holds: template per allergy, all allergies on one line",
'problems': "args holds: line template, one problem per line",
'diagnoses': 'args: line template, one diagnosis per line',
'PHX': "Past medical HiXtory; args: line template//separator//strftime date format",
'encounter_list': "args: per-encounter template, each ends up on one line",
'documents': """retrieves documents from the archive:
args: <select>//<description>//<template>//<path template>//<path>
select: let user select which documents to include, optional, if not given: all documents included
description: whether to include descriptions, optional
template: something %(field)s something else (do not include '//' or '::' itself in the template)
path template: the template for outputting the path to exported
copies of the document pages, if not given no pages are exported,
this template can contain "%(name)s" and/or "%(fullpath)s" which
is replaced by the appropriate value for each exported file
path: into which path to export copies of the document pages, temp dir if not given""",
'reminders': """patient reminders:
args: <template>//<date format>
template: something %(field)s something else (do not include '//' or '::' itself in the template)""",
'external_care': """External care entries:
args: <template>
template: something %(field)s something else (do not include '//' or '::' itself in the template)""",
# provider related:
'current_provider': "no arguments",
'current_provider_name': """formatted name of current provider:
args: <template>,
template: something %(field)s something else (do not include '//' or '::' itself in the template)
""",
'current_provider_title': """formatted name of current provider:
args: <optional template>,
template: something %(title)s something else (do not include '//' or '::' itself in the template)
""",
'current_provider_firstnames': """formatted name of current provider:
args: <optional template>,
template: something %(firstnames)s something else (do not include '//' or '::' itself in the template)
""",
'current_provider_lastnames': """formatted name of current provider:
args: <optional template>,
template: something %(lastnames)s something else (do not include '//' or '::' itself in the template)
""",
'current_provider_external_id': "args: <type of ID>//<issuer of ID>",
'primary_praxis_provider': "primary provider for current patient in this praxis",
'primary_praxis_provider_external_id': "args: <type of ID>//<issuer of ID>",
# praxis related:
'praxis': """retrieve current branch of your praxis:
args: <template>//select
template: something %(field)s something else (do not include '//' or '::' itself in the template)
select: if this is present allow selection of the branch rather than using the current branch""",
'praxis_address': "args: <optional formatting template>",
'praxis_comm': "args: type//<optional formatting template>",
'praxis_id': "args: <type of ID>//<issuer of ID>//<optional formatting template>",
'praxis_vcf': """returns path to VCF for current praxis branch
args: <template>
template: %s-template for path
""",
u'praxis_mcf': u"""returns MECARD for current praxis branch
args: <format>//<template>
format: fmt=qr|mcf|txt
qr: QR code png file path,
mcf: MECARD .mcf file path,
txt: MECARD string,
default - if omitted - is "txt",
template: tmpl=<%s-template string>, "%s" if omitted
""",
u'praxis_scan2pay': u"""return scan2pay data or QR code for current praxis
args: <format>,
format: fmt=qr|txt
qr: QR code png file path,
txt: scan2pay data string,
default - if omitted: qr
""",
# billing related:
'bill': """retrieve a bill
args: <template>//<date format>
template: something %(field)s something else (do not include '//' or '::' itself in the template)
date format: strftime date format""",
'bill_scan2pay': u"""return scan2pay data or QR code for a bill
args: <format>,
format: fmt=qr|txt
qr: QR code png file path,
txt: scan2pay data string,
default - if omitted: qr
""",
'bill_item': """retrieve the items of a previously retrieved (and therefore cached until the next retrieval) bill
args: <template>//<date format>
template: something %(field)s something else (do not include '//' or '::' itself in the template)
date format: strftime date format""",
'bill_adr_street': "args: optional template (%s-style formatting template); cached per bill",
'bill_adr_number': "args: optional template (%s-style formatting template); cached per bill",
'bill_adr_subunit': "args: optional template (%s-style formatting template); cached per bill",
'bill_adr_location': "args: optional template (%s-style formatting template); cached per bill",
'bill_adr_suburb': "args: optional template (%s-style formatting template); cached per bill",
'bill_adr_postcode': "args: optional template (%s-style formatting template); cached per bill",
'bill_adr_region': "args: optional template (%s-style formatting template); cached per bill",
'bill_adr_country': "args: optional template (%s-style formatting template); cached per bill"
}
known_variant_placeholders = list(__known_variant_placeholders)
# http://help.libreoffice.org/Common/List_of_Regular_Expressions
# except that OOo cannot be non-greedy |-(
#default_placeholder_regex = r'\$<.+?>\$' # previous working placeholder
# regex logic:
# starts with "$"
# followed by "<"
# followed by > 0 characters but NOT "<" but ONLY up to the NEXT ":"
# followed by "::"
# followed by any number of characters but ONLY up to the NEXT ":"
# followed by "::"
# followed by any number of numbers
# followed by ">"
# followed by "$"
# previous:
default_placeholder_regex = r'\$<[^<:]+::.*?::\d*?>\$|\$<[^<:]+::.*?::\d+-\d+>\$' # this one works [except that OOo cannot be non-greedy |-( ]
first_pass_placeholder_regex = r'|'.join ([
r'\$<[^<:]+::.*?(?=::\d*?>\$)::\d*?>\$',
r'\$<[^<:]+::.*?(?=::\d+-\d+>\$)::\d+-\d+>\$'
])
second_pass_placeholder_regex = r'|'.join ([
r'\$<<[^<:]+?::.*?(?=::\d*?>>\$)::\d*?>>\$',
r'\$<<[^<:]+?::.*?(?=::\d+-\d+>>\$)::\d+-\d+>>\$'
])
third_pass_placeholder_regex = r'|'.join ([
r'\$<<<[^<:]+?::.*?(?=::\d*?>>>\$)::\d*?>>>\$',
r'\$<<<[^<:]+?::.*?(?=::\d+-\d+>>>\$)::\d+-\d+>>>\$'
])
default_placeholder_start = '$<'
default_placeholder_end = '>$'
#=====================================================================
def show_placeholders():
fname = gmTools.get_unique_filename(prefix = 'gm-placeholders-', suffix = '.txt')
ph_file = io.open(fname, mode = 'wt', encoding = 'utf8', errors = 'replace')
ph_file.write('Here you can find some more documentation on placeholder use:\n')
ph_file.write('\n http://wiki.gnumed.de/bin/view/Gnumed/GmManualLettersForms\n\n\n')
ph_file.write('Variable placeholders:\n')
ph_file.write('Usage: $<PLACEHOLDER_NAME::ARGUMENTS::REGION_DEFINITION>$)\n')
ph_file.write(' REGION_DEFINITION:\n')
ph_file.write('* a single number specifying the maximum output length or\n')
ph_file.write('* a number, a "-", followed by a second number specifying the region of the string to return\n')
ph_file.write('ARGUMENTS:\n')
ph_file.write('* depend on the actual placeholder (see there)\n')
ph_file.write('* if a template is supported it will be used to %-format the output\n')
ph_file.write('* templates may be either %s-style or %(name)s-style\n')
ph_file.write('* templates cannot contain "::"\n')
ph_file.write('* templates cannot contain whatever the arguments divider is set to (default "//")\n')
for ph in known_variant_placeholders:
txt = __known_variant_placeholders[ph]
ph_file.write('\n')
ph_file.write(' ---=== %s ===---\n' % ph)
ph_file.write('\n')
ph_file.write(txt)
ph_file.write('\n\n')
ph_file.write('\n')
ph_file.write('Known injectable placeholders (use like: $<PLACEHOLDER_NAME::ARGUMENTS::MAX OUTPUT LENGTH>$):\n')
for ph in known_injectable_placeholders:
ph_file.write(' %s\n' % ph)
ph_file.write('\n')
ph_file.close()
gmMimeLib.call_viewer_on_file(aFile = fname, block = False)
#=====================================================================
class gmPlaceholderHandler(gmBorg.cBorg):
"""Returns values for placeholders.
- patient related placeholders operate on the currently active patient
- is passed to the forms handling code, for example
Return values when .debug is False:
- errors with placeholders return None
- placeholders failing to resolve to a value return an empty string
Return values when .debug is True:
- errors with placeholders return an error string
- placeholders failing to resolve to a value return a warning string
There are several types of placeholders:
injectable placeholders
- they must be set up before use by set_placeholder()
- they should be removed after use by unset_placeholder()
- the syntax is like extended static placeholders
- known ones are listed in known_injectable_placeholders
- per-form ones can be used but must exist before
the form is processed
variant placeholders
- those are listed in known_variant_placeholders
- they are parsed into placeholder, data, and maximum length
- the length is optional
- data is passed to the handler
Note that this cannot be called from a non-gui thread unless
wrapped in wx.CallAfter().
"""
def __init__(self, *args, **kwargs):
self.pat = gmPerson.gmCurrentPatient()
self.debug = False
self.invalid_placeholder_template = _('invalid placeholder >>>>>%s<<<<<')
self.__injected_placeholders = {}
self.__cache = {}
self.__esc_style = None
self.__esc_func = lambda x:x
self.__ellipsis = None
self.__args_divider = '//'
self.__data_encoding = None
self.__data_encoding_strict = False
#--------------------------------------------------------
# external API
#--------------------------------------------------------
def set_placeholder(self, key=None, value=None, known_only=True):
_log.debug('setting [%s]', key)
if key not in known_injectable_placeholders:
if known_only:
raise ValueError('un-injectable placeholder [%s]' % key)
_log.debug('placeholder [%s] not known as injectable', key)
self.__injected_placeholders[key] = value
#--------------------------------------------------------
def unset_placeholder(self, key=None):
_log.debug('unsetting [%s]', key)
try:
del self.__injected_placeholders[key]
except KeyError:
_log.debug('injectable placeholder [%s] unknown', key)
#--------------------------------------------------------
def set_cache_value(self, key=None, value=None):
self.__cache[key] = value
#--------------------------------------------------------
def unset_cache_value(self, key=None):
del self.__cache[key]
#--------------------------------------------------------
def _set_escape_style(self, escape_style=None):
self.__esc_style = escape_style
return
escape_style = property(lambda x:x, _set_escape_style)
#--------------------------------------------------------
def _set_escape_function(self, escape_function=None):
if escape_function is None:
self.__esc_func = lambda x:x
return
if not callable(escape_function):
raise ValueError('[%s._set_escape_function]: <%s> not callable' % (self.__class__.__name__, escape_function))
self.__esc_func = escape_function
return
escape_function = property(lambda x:x, _set_escape_function)
#--------------------------------------------------------
def _set_ellipsis(self, ellipsis):
if ellipsis == 'NONE':
ellipsis = None
self.__ellipsis = ellipsis
ellipsis = property(lambda x: self.__ellipsis, _set_ellipsis)
#--------------------------------------------------------
def _set_arguments_divider(self, divider):
if divider == 'DEFAULT':
divider = '//'
self.__args_divider = divider
arguments_divider = property(lambda x: self.__args_divider, _set_arguments_divider)
#--------------------------------------------------------
def _set_data_encoding(self, encoding):
if encoding == 'NONE':
self.__data_encoding = None
self.__data_encoding_strict = False
self.__data_encoding_strict = False
if encoding.endswith('-strict'):
self.__data_encoding_strict = True
encoding = encoding[:-7]
try:
codecs.lookup(encoding)
self.__data_encoding = encoding
except LookupError:
_log.error('<codecs> module can NOT handle encoding [%s]' % enc)
data_encoding = property(lambda x: self.__data_encoding, _set_data_encoding)
#--------------------------------------------------------
placeholder_regex = property(lambda x: default_placeholder_regex, lambda x:x)
first_pass_placeholder_regex = property(lambda x: first_pass_placeholder_regex, lambda x:x)
second_pass_placeholder_regex = property(lambda x: second_pass_placeholder_regex, lambda x:x)
third_pass_placeholder_regex = property(lambda x: third_pass_placeholder_regex, lambda x:x)
#--------------------------------------------------------
def __parse_region_definition(self, region_str):
region_str = region_str.strip()
if region_str == '':
return None, None
try:
pos_last_char = int(region_str)
return 0, pos_last_char
except (TypeError, ValueError):
_log.debug('region definition not a simple length')
# note that we only check for "legality", not for reasonable bounds
first_last = region_str.split('-')
if len(first_last) != 2:
_log.error('invalid placeholder region definition: %s', region_str)
raise ValueError
try:
pos_first_char = int(first_last[0].strip())
pos_last_char = int(first_last[1].strip())
except (TypeError, ValueError):
_log.error('invalid placeholder region definition: %s', region_str)
raise ValueError
# user says 1,2,... (= character position in string), Python needs 0,1,... (indexes 0-based)
if pos_first_char > 0:
pos_first_char -= 1
return pos_first_char, pos_last_char
#--------------------------------------------------------
def __make_compatible_with_encoding(self, data_str):
if self.__data_encoding is None:
return data_str
try:
codecs.encode(data_str, self.__data_encoding, 'strict')
return data_str
except UnicodeEncodeError:
_log.error('cannot strict-encode string into [%s]: %s', self.__data_encoding, data_str)
if self.__data_encoding_strict:
return 'not compatible with encoding [%s]: %s' % (self.__data_encoding, data_str)
try:
import unidecode
except ImportError:
_log.debug('cannot transliterate, <unidecode> module not installed')
return codecs.encode(data_str, self.__data_encoding, 'replace').decode(self.__data_encoding)
return unidecode.unidecode(data_str).decode('utf8')
#--------------------------------------------------------
# __getitem__ API
#--------------------------------------------------------
def __getitem__(self, placeholder):
"""Map self['placeholder'] to self.placeholder.
This is useful for replacing placeholders parsed out
of documents as strings.
Unknown/invalid placeholders still deliver a result but
it will be glaringly obvious if debugging is enabled.
"""
_log.debug('replacing [%s]', placeholder)
original_placeholder_def = placeholder
# remove leading/trailing '$<(<<)' and '(>>)>$'
if placeholder.startswith(default_placeholder_start):
placeholder = placeholder.lstrip('$').lstrip('<')
if placeholder.endswith(default_placeholder_end):
placeholder = placeholder.rstrip('$').rstrip('>')
else:
_log.error('placeholder must either start with [%s] and end with [%s] or neither of both', default_placeholder_start, default_placeholder_end)
if self.debug:
return self._escape(self.invalid_placeholder_template % original_placeholder_def)
return None
# injectable placeholder ?
parts = placeholder.split('::::', 1)
if len(parts) == 2:
ph_name, region_str = parts
is_an_injectable = True
try:
val = self.__injected_placeholders[ph_name]
except KeyError:
is_an_injectable = False
except Exception:
_log.exception('injectable placeholder handling error: %s', original_placeholder_def)
if self.debug:
return self._escape(self.invalid_placeholder_template % original_placeholder_def)
return None
if is_an_injectable:
if val is None:
if self.debug:
return self._escape('injectable placeholder [%s]: no value available' % ph_name)
return placeholder
try:
pos_first_char, pos_last_char = self.__parse_region_definition(region_str)
except ValueError:
if self.debug:
return self._escape(self.invalid_placeholder_template % original_placeholder_def)
return None
if pos_last_char is None:
return self.__make_compatible_with_encoding(val)
# ellipsis needed ?
if len(val) > (pos_last_char - pos_first_char):
# ellipsis wanted ?
if self.__ellipsis is not None:
return self.__make_compatible_with_encoding(val[pos_first_char:(pos_last_char-len(self.__ellipsis))] + self.__ellipsis)
return self.__make_compatible_with_encoding(val[pos_first_char:pos_last_char])
# variable placeholders
if len(placeholder.split('::', 2)) < 3:
_log.error('invalid placeholder structure: %s', original_placeholder_def)
if self.debug:
return self._escape(self.invalid_placeholder_template % original_placeholder_def)
return None
ph_name, data_and_lng = placeholder.split('::', 1) # note: split _is_ lsplit
options, region_str = data_and_lng.rsplit('::', 1)
_log.debug('placeholder parts: name=[%s]; region_def=[%s]; options=>>>%s<<<', ph_name, region_str, options)
try:
pos_first_char, pos_last_char = self.__parse_region_definition(region_str)
except ValueError:
if self.debug:
return self._escape(self.invalid_placeholder_template % original_placeholder_def)
return None
handler = getattr(self, '_get_variant_%s' % ph_name, None)
if handler is None:
_log.warning('no handler <_get_variant_%s> for placeholder %s', ph_name, original_placeholder_def)
if self.debug:
return self._escape(self.invalid_placeholder_template % original_placeholder_def)
return None
try:
val = handler(data = options)
if pos_last_char is None:
return self.__make_compatible_with_encoding(val)
# ellipsis needed ?
if len(val) > (pos_last_char - pos_first_char):
# ellipsis wanted ?
if self.__ellipsis is not None:
return self.__make_compatible_with_encoding(val[pos_first_char:(pos_last_char-len(self.__ellipsis))] + self.__ellipsis)
return self.__make_compatible_with_encoding(val[pos_first_char:pos_last_char])
except Exception:
_log.exception('placeholder handling error: %s', original_placeholder_def)
if self.debug:
return self._escape(self.invalid_placeholder_template % original_placeholder_def)
return None
_log.error('something went wrong, should never get here')
return None
#--------------------------------------------------------
# placeholder handlers
#--------------------------------------------------------
def _get_variant_ph_cfg(self, data=None):
options = data.split('//') # ALWAYS use '//' for splitting, regardless of self.__args_divider
name = options[0]
val = options[1]
if name == 'ellipsis':
self.ellipsis = val
elif name == 'argumentsdivider':
self.arguments_divider = val
elif name == 'encoding':
self.data_encoding = val
if len(options) > 2:
return options[2] % {'name': name, 'value': val}
return ''
#--------------------------------------------------------
def _get_variant_client_version(self, data=None):
return self._escape (
gmTools.coalesce (
_cfg.get(option = 'client_version'),
'%s' % self.__class__.__name__
)
)
#--------------------------------------------------------
def _get_variant_reminders(self, data=None):
from Gnumed.wxpython import gmProviderInboxWidgets
template = _('due %(due_date)s: %(comment)s (%(interval_due)s)')
date_format = '%Y %b %d'
data_parts = data.split(self.__args_divider)
if len(data_parts) > 0:
if data_parts[0].strip() != '':
template = data_parts[0]
if len(data_parts) > 1:
if data_parts[1].strip() != '':
date_format = data_parts[1]
reminders = gmProviderInboxWidgets.manage_reminders(patient = self.pat.ID)
if reminders is None:
return ''
if len(reminders) == 0:
return ''
lines = [ template % r.fields_as_dict(date_format = date_format, escape_style = self.__esc_style) for r in reminders ]
return '\n'.join(lines)
#--------------------------------------------------------
def _get_variant_external_care(self, data=None):
from Gnumed.wxpython import gmExternalCareWidgets
external_cares = gmExternalCareWidgets.manage_external_care()
if external_cares is None:
return ''
if len(external_cares) == 0:
return ''
template = data
lines = [ template % ext.fields_as_dict(escape_style = self.__esc_style) for ext in external_cares ]
return '\n'.join(lines)
#--------------------------------------------------------
def _get_variant_documents(self, data=None):
select = False
include_descriptions = False
template = '%s'
path_template = None
export_path = None
data_parts = data.split(self.__args_divider)
if 'select' in data_parts:
select = True
data_parts.remove('select')
if 'description' in data_parts:
include_descriptions = True
data_parts.remove('description')
template = data_parts[0]
if len(data_parts) > 1:
path_template = data_parts[1]
if len(data_parts) > 2:
export_path = data_parts[2]
# create path
if export_path is not None:
export_path = os.path.normcase(os.path.expanduser(export_path))
gmTools.mkdir(export_path)
# select docs
if select:
docs = gmDocumentWidgets.manage_documents(msg = _('Select the patient documents to reference from the new document.'), single_selection = False)
else:
docs = self.pat.document_folder.documents
if docs is None:
return ''
lines = []
for doc in docs:
lines.append(template % doc.fields_as_dict(date_format = '%Y %b %d', escape_style = self.__esc_style))
if include_descriptions:
for desc in doc.get_descriptions(max_lng = None):
lines.append(self._escape(desc['text'] + '\n'))
if path_template is not None:
for part_name in doc.save_parts_to_files(export_dir = export_path):
path, name = os.path.split(part_name)
lines.append(path_template % {'fullpath': part_name, 'name': name})
return '\n'.join(lines)
#--------------------------------------------------------
def _get_variant_encounter_list(self, data=None):
encounters = gmEncounterWidgets.select_encounters(single_selection = False)
if not encounters:
return ''
template = data
lines = []
for enc in encounters:
try:
lines.append(template % enc.fields_as_dict(date_format = '%Y %b %d', escape_style = self.__esc_style))
except Exception:
lines.append('error formatting encounter')
_log.exception('problem formatting encounter list')
_log.error('template: %s', template)
_log.error('encounter: %s', encounter)
return '\n'.join(lines)
#--------------------------------------------------------
def _get_variant_soap_for_encounters(self, data=None):
"""Select encounters from list and format SOAP thereof.
data: soap_cats (' ' -> None -> admin) // date format
"""
# defaults
cats = None
date_format = None
if data is not None:
data_parts = data.split(self.__args_divider)
# part[0]: categories
if len(data_parts[0]) > 0:
cats = []
if ' ' in data_parts[0]:
cats.append(None)
data_parts[0] = data_parts[0].replace(' ', '')
cats.extend(list(data_parts[0]))
# part[1]: date format
if len(data_parts) > 1:
if len(data_parts[1]) > 0:
date_format = data_parts[1]
encounters = gmEncounterWidgets.select_encounters(single_selection = False)
if not encounters:
return ''
chunks = []
for enc in encounters:
chunks.append(enc.format_latex (
date_format = date_format,
soap_cats = cats,
soap_order = 'soap_rank, date'
))
return ''.join(chunks)
#--------------------------------------------------------
def _get_variant_emr_journal(self, data=None):
# default: all categories, neutral template
cats = list('soapu')
cats.append(None)
template = '%s'
interactive = True
line_length = 9999
time_range = None
if data is not None:
data_parts = data.split(self.__args_divider)
# part[0]: categories
cats = []
# ' ' -> None == admin
for c in list(data_parts[0]):
if c == ' ':
c = None
cats.append(c)
# '' -> SOAP + None
if cats == '':
cats = list('soapu').append(None)
# part[1]: template
if len(data_parts) > 1:
template = data_parts[1]
# part[2]: line length
if len(data_parts) > 2:
try:
line_length = int(data_parts[2])
except Exception:
line_length = 9999
# part[3]: weeks going back in time
if len(data_parts) > 3:
try:
time_range = 7 * int(data_parts[3])
except Exception:
#time_range = None # infinite
# pass on literally, meaning it must be a valid PG interval string
time_range = data_parts[3]
# FIXME: will need to be a generator later on
narr = self.pat.emr.get_as_journal(soap_cats = cats, time_range = time_range)
if len(narr) == 0:
return ''
lines = []
line_dict = {}
for n in narr:
for key in narr[0]:
if isinstance(n[key], str):
line_dict[key] = self._escape(text = n[key])
continue
line_dict[key] = n[key]
try:
lines.append((template % line_dict)[:line_length])
except KeyError:
return 'invalid key in template [%s], valid keys: %s]' % (template, narr[0].keys())
return '\n'.join(lines)
#--------------------------------------------------------
def _get_variant_soap_by_issue(self, data=None):
return self.__get_variant_soap_by_issue_or_episode(data = data, mode = 'issue')
#--------------------------------------------------------
def _get_variant_soap_by_episode(self, data=None):
return self.__get_variant_soap_by_issue_or_episode(data = data, mode = 'episode')
#--------------------------------------------------------
def __get_variant_soap_by_issue_or_episode(self, data=None, mode=None):
# default: all categories, neutral template
cats = list('soapu')
cats.append(None)
date_format = None
template = '%s'
if data is not None:
data_parts = data.split(self.__args_divider)
# part[0]: categories
if len(data_parts[0]) > 0:
cats = []
if ' ' in data_parts[0]:
cats.append(None)
cats.extend(list(data_parts[0].replace(' ', '')))
# part[1]: date format
if len(data_parts) > 1:
if len(data_parts[1]) > 0:
date_format = data_parts[1]
# part[2]: template
if len(data_parts) > 2:
if len(data_parts[2]) > 0:
template = data_parts[2]
if mode == 'issue':
narr = gmNarrativeWorkflows.select_narrative_by_issue(soap_cats = cats)
else:
narr = gmNarrativeWorkflows.select_narrative_by_episode(soap_cats = cats)
if narr is None:
return ''
if len(narr) == 0:
return ''
try:
narr = [ template % n.fields_as_dict(date_format = date_format, escape_style = self.__esc_style) for n in narr ]
except KeyError:
return 'invalid key in template [%s], valid keys: %s]' % (template, narr[0].keys())
return '\n'.join(narr)
#--------------------------------------------------------
def _get_variant_progress_notes(self, data=None):
return self._get_variant_soap(data = data)
#--------------------------------------------------------
def _get_variant_soap_s(self, data=None):
return self._get_variant_soap(data = 's')
#--------------------------------------------------------
def _get_variant_soap_o(self, data=None):
return self._get_variant_soap(data = 'o')
#--------------------------------------------------------
def _get_variant_soap_a(self, data=None):
return self._get_variant_soap(data = 'a')
#--------------------------------------------------------
def _get_variant_soap_p(self, data=None):
return self._get_variant_soap(data = 'p')
#--------------------------------------------------------
def _get_variant_soap_u(self, data=None):
return self._get_variant_soap(data = 'u')
#--------------------------------------------------------
def _get_variant_soap_admin(self, data=None):
return self._get_variant_soap(data = ' ')
#--------------------------------------------------------
def _get_variant_soap(self, data=None):
# default: all categories, neutral template
cats = list('soapu')
cats.append(None)
template = '%(narrative)s'
if data is not None:
data_parts = data.split(self.__args_divider)
# part[0]: categories
cats = []
# ' ' -> None == admin
for cat in list(data_parts[0]):
if cat == ' ':
cat = None
cats.append(cat)
# '' -> SOAP + None
if cats == '':
cats = list('soapu')
cats.append(None)
# part[1]: template
if len(data_parts) > 1:
template = data_parts[1]
#narr = gmNarrativeWorkflows.select_narrative_from_episodes(soap_cats = cats)
narr = gmNarrativeWorkflows.select_narrative(soap_cats = cats)
if narr is None:
return ''
if len(narr) == 0:
return ''
# if any "%s" is in the template there cannot be any %(field)s
# and we also restrict the fields to .narrative (this is the
# old placeholder behaviour
if '%s' in template:
narr = [ self._escape(n['narrative']) for n in narr ]
else:
narr = [ n.fields_as_dict(escape_style = self.__esc_style) for n in narr ]
try:
narr = [ template % n for n in narr ]
except KeyError:
return 'invalid key in template [%s], valid keys: %s]' % (template, narr[0].keys())
except TypeError:
return 'cannot mix "%%s" and "%%(field)s" in template [%s]' % template
return '\n'.join(narr)
#--------------------------------------------------------
def _get_variant_title(self, data=None):
return self._get_variant_name(data = '%(title)s')
#--------------------------------------------------------
def _get_variant_firstname(self, data=None):
return self._get_variant_name(data = '%(firstnames)s')
#--------------------------------------------------------
def _get_variant_lastname(self, data=None):
return self._get_variant_name(data = '%(lastnames)s')
#--------------------------------------------------------
def _get_variant_name(self, data=None):
if data is None:
return [_('template is missing')]
name = self.pat.get_active_name()
parts = {
'title': self._escape(gmTools.coalesce(name['title'], '')),
'firstnames': self._escape(name['firstnames']),
'lastnames': self._escape(name['lastnames']),
'preferred': self._escape(gmTools.coalesce (
value2test = name['preferred'],
return_instead = ' ',
template4value = ' "%s" '
))
}
return data % parts
#--------------------------------------------------------
def _get_variant_date_of_birth(self, data='%Y %b %d'):
return self.pat.get_formatted_dob(format = data)
#--------------------------------------------------------
# FIXME: extend to all supported genders
def _get_variant_gender_mapper(self, data='male//female//other'):
values = data.split('//', 2)
if len(values) == 2:
male_value, female_value = values
other_value = '<unkown gender>'
elif len(values) == 3:
male_value, female_value, other_value = values
else:
return _('invalid gender mapping layout: [%s]') % data
if self.pat['gender'] == 'm':
return self._escape(male_value)
if self.pat['gender'] == 'f':
return self._escape(female_value)
return self._escape(other_value)
#--------------------------------------------------------
# address related placeholders
#--------------------------------------------------------
def __get_variant_gen_adr_part(self, data='?', part=None):
template = '%s'
msg = _('Select the address you want to use !')
cache_id = ''
options = data.split('//', 4)
if len(options) > 0:
template = options[0]
if template.strip() == '':
template = '%s'
if len(options) > 1:
msg = options[1]
if len(options) > 2:
cache_id = options[2]
cache_key = 'generic_address::' + cache_id
try:
adr2use = self.__cache[cache_key]
_log.debug('cache hit (%s): [%s]', cache_key, adr2use)
except KeyError:
adr2use = None
if adr2use is None:
dlg = gmAddressWidgets.cAddressSelectionDlg(None, -1)
dlg.message = msg
choice = dlg.ShowModal()
adr2use = dlg.address
dlg.DestroyLater()
if choice == wx.ID_CANCEL:
return ''
self.__cache[cache_key] = adr2use
return template % self._escape(adr2use[part])
#--------------------------------------------------------
def _get_variant_gen_adr_street(self, data='?'):
return self.__get_variant_gen_adr_part(data = data, part = 'street')
#--------------------------------------------------------
def _get_variant_gen_adr_number(self, data='?'):
return self.__get_variant_gen_adr_part(data = data, part = 'number')
#--------------------------------------------------------
def _get_variant_gen_adr_subunit(self, data='?'):
return self.__get_variant_gen_adr_part(data = data, part = 'subunit')
#--------------------------------------------------------
def _get_variant_gen_adr_location(self, data='?'):
return self.__get_variant_gen_adr_part(data = data, part = 'urb')
#--------------------------------------------------------
def _get_variant_gen_adr_suburb(self, data='?'):
return self.__get_variant_gen_adr_part(data = data, part = 'suburb')
#--------------------------------------------------------
def _get_variant_gen_adr_postcode(self, data='?'):
return self.__get_variant_gen_adr_part(data = data, part = 'postcode')
#--------------------------------------------------------
def _get_variant_gen_adr_region(self, data='?'):
return self.__get_variant_gen_adr_part(data = data, part = 'l10n_region')
#--------------------------------------------------------
def _get_variant_gen_adr_country(self, data='?'):
return self.__get_variant_gen_adr_part(data = data, part = 'l10n_country')
#--------------------------------------------------------
def __get_variant_receiver_part(self, data='%s', part=None):
template = '%s'
cache_id = ''
options = data.split('//', 3)
if len(options) > 0:
template = options[0]
if template.strip() == '':
template = '%s'
if len(options) > 1:
cache_id = options[1]
cache_key = 'receiver::' + cache_id
try:
name, adr = self.__cache[cache_key]
_log.debug('cache hit (%s): [%s:%s]', cache_key, name, adr)
except KeyError:
name = None
adr = None
if name is None:
from Gnumed.wxpython import gmFormWidgets
dlg = gmFormWidgets.cReceiverSelectionDlg(None, -1)
dlg.patient = self.pat
choice = dlg.ShowModal()
name = dlg.name
adr = dlg.address
dlg.DestroyLater()
if choice == wx.ID_CANCEL:
return ''
self.__cache[cache_key] = (name, adr)
if part == 'name':
return template % self._escape(name)
return template % self._escape(gmTools.coalesce(adr[part], ''))
#--------------------------------------------------------
def _get_variant_receiver_name(self, data='%s'):
return self.__get_variant_receiver_part(data = data, part = 'name')
#--------------------------------------------------------
def _get_variant_receiver_street(self, data='%s'):
return self.__get_variant_receiver_part(data = data, part = 'street')
#--------------------------------------------------------
def _get_variant_receiver_number(self, data='%s'):
return self.__get_variant_receiver_part(data = data, part = 'number')
#--------------------------------------------------------
def _get_variant_receiver_subunit(self, data='%s'):
return self.__get_variant_receiver_part(data = data, part = 'subunit')
#--------------------------------------------------------
def _get_variant_receiver_location(self, data='%s'):
return self.__get_variant_receiver_part(data = data, part = 'urb')
#--------------------------------------------------------
def _get_variant_receiver_suburb(self, data='%s'):
return self.__get_variant_receiver_part(data = data, part = 'suburb')
#--------------------------------------------------------
def _get_variant_receiver_postcode(self, data='%s'):
return self.__get_variant_receiver_part(data = data, part = 'postcode')
#--------------------------------------------------------
def _get_variant_receiver_region(self, data='%s'):
return self.__get_variant_receiver_part(data = data, part = 'l10n_region')
#--------------------------------------------------------
def _get_variant_receiver_country(self, data='%s'):
return self.__get_variant_receiver_part(data = data, part = 'l10n_country')
#--------------------------------------------------------
def _get_variant_patient_address(self, data=''):
data_parts = data.split(self.__args_divider)
# address type
adr_type = data_parts[0].strip()
orig_type = adr_type
if adr_type != '':
adrs = self.pat.get_addresses(address_type = adr_type)
if len(adrs) == 0:
_log.warning('no address for type [%s]', adr_type)
adr_type = ''
if adr_type == '':
_log.debug('asking user for address type')
adr = gmPersonContactWidgets.select_address(missing = orig_type, person = self.pat)
if adr is None:
if self.debug:
return _('no address type replacement selected')
return ''
adr_type = adr['address_type']
adr = self.pat.get_addresses(address_type = adr_type)[0]
# formatting template
template = _('%(street)s %(number)s, %(postcode)s %(urb)s, %(l10n_region)s, %(l10n_country)s')
if len(data_parts) > 1:
if data_parts[1].strip() != '':
template = data_parts[1]
try:
return template % adr.fields_as_dict(escape_style = self.__esc_style)
except Exception:
_log.exception('error formatting address')
_log.error('template: %s', template)
return None
#--------------------------------------------------------
def __get_variant_adr_part(self, data='?', part=None):
requested_type = data.strip()
cache_key = 'adr-type-%s' % requested_type
try:
type2use = self.__cache[cache_key]
_log.debug('cache hit (%s): [%s] -> [%s]', cache_key, requested_type, type2use)
except KeyError:
type2use = requested_type
if type2use != '':
adrs = self.pat.get_addresses(address_type = type2use)
if len(adrs) == 0:
_log.warning('no address of type [%s] for <%s> field extraction', requested_type, part)
type2use = ''
if type2use == '':
_log.debug('asking user for replacement address type')
adr = gmPersonContactWidgets.select_address(missing = requested_type, person = self.pat)
if adr is None:
_log.debug('no replacement selected')
if self.debug:
return self._escape(_('no address type replacement selected'))
return ''
type2use = adr['address_type']
self.__cache[cache_key] = type2use
_log.debug('caching (%s): [%s] -> [%s]', cache_key, requested_type, type2use)
part_data = self.pat.get_addresses(address_type = type2use)[0][part]
if part_data is None:
part_data = '' # do escape empty string since we never know what target formats need
return self._escape(part_data)
#--------------------------------------------------------
def _get_variant_adr_street(self, data='?'):
return self.__get_variant_adr_part(data = data, part = 'street')
#--------------------------------------------------------
def _get_variant_adr_number(self, data='?'):
return self.__get_variant_adr_part(data = data, part = 'number')
#--------------------------------------------------------
def _get_variant_adr_subunit(self, data='?'):
return self.__get_variant_adr_part(data = data, part = 'subunit')
#--------------------------------------------------------
def _get_variant_adr_location(self, data='?'):
return self.__get_variant_adr_part(data = data, part = 'urb')
#--------------------------------------------------------
def _get_variant_adr_suburb(self, data='?'):
return self.__get_variant_adr_part(data = data, part = 'suburb')
#--------------------------------------------------------
def _get_variant_adr_postcode(self, data='?'):
return self.__get_variant_adr_part(data = data, part = 'postcode')
#--------------------------------------------------------
def _get_variant_adr_region(self, data='?'):
return self.__get_variant_adr_part(data = data, part = 'l10n_region')
#--------------------------------------------------------
def _get_variant_adr_country(self, data='?'):
return self.__get_variant_adr_part(data = data, part = 'l10n_country')
#--------------------------------------------------------
def _get_variant_patient_comm(self, data=None):
comm_type = None
template = '%(url)s'
if data is not None:
data_parts = data.split(self.__args_divider)
if len(data_parts) > 0:
comm_type = data_parts[0]
if len(data_parts) > 1:
template = data_parts[1]
comms = self.pat.get_comm_channels(comm_medium = comm_type)
if len(comms) == 0:
if self.debug:
return self._escape(_('no URL for comm channel [%s]') % data)
return ''
return template % comms[0].fields_as_dict(escape_style = self.__esc_style)
#--------------------------------------------------------
def _get_variant_patient_photo(self, data=None):
template = '%s'
target_mime = None
target_ext = None
if data is not None:
parts = data.split(self.__args_divider)
template = parts[0]
if len(parts) > 1:
target_mime = parts[1].strip()
if len(parts) > 2:
target_ext = parts[2].strip()
if target_ext is None:
if target_mime is not None:
target_ext = gmMimeLib.guess_ext_by_mimetype(mimetype = target_mime)
cache_key = 'patient_photo_path::%s::%s' % (target_mime, target_ext)
try:
fname = self.__cache[cache_key]
_log.debug('cache hit on [%s]: %s', cache_key, fname)
except KeyError:
mugshot = self.pat.document_folder.latest_mugshot
if mugshot is None:
if self.debug:
return self._escape(_('no mugshot available'))
return ''
fname = mugshot.save_to_file (
target_mime = target_mime,
target_extension = target_ext,
ignore_conversion_problems = True
)
if fname is None:
if self.debug:
return self._escape(_('cannot export or convert latest mugshot'))
return ''
self.__cache[cache_key] = fname
return template % fname
#--------------------------------------------------------
def _get_variant_patient_vcf(self, data):
options = data.split(self.__args_divider)
template = options[0].strip()
if template == '':
template = '%s'
return template % self.pat.export_as_vcard()
#--------------------------------------------------------
def _get_variant_patient_mcf(self, data):
kwds = {'tmpl': '%s', 'fmt': 'txt'}
options = self._parse_ph_options (
options_data = data,
kwd_defaults = kwds
)
if options['fmt'] not in ['qr', 'mcf', 'txt']:
if self.debug:
return self._escape(_('patient_mcf: invalid format (qr/mcf/txt)'))
return ''
if options['fmt'] == 'txt':
return template % self._escape(self.pat.MECARD)
if options['fmt'] == 'mcf':
return template % self.pat.export_as_mecard()
if options['fmt'] == 'qr':
qr_filename = gmTools.create_qrcode(text = self.pat.MECARD)
if qr_filename is None:
return self._escape('patient_mcf-cannot_create_QR_code')
return options['tmpl'] % qr_filename
return None
#--------------------------------------------------------
def _get_variant_patient_gdt(self, data):
options = data.split(self.__args_divider)
template = options[0].strip()
if template == '':
template = '%s'
return template % self.pat.export_as_gdt()
#--------------------------------------------------------
def _get_variant_patient_tags(self, data='%s//\\n'):
if len(self.pat.tags) == 0:
if self.debug:
return self._escape(_('no tags for this patient'))
return ''
tags = gmDemographicsWidgets.select_patient_tags(patient = self.pat)
if tags is None:
if self.debug:
return self._escape(_('no patient tags selected for inclusion') % data)
return ''
template, separator = data.split('//', 2)
return separator.join([ template % t.fields_as_dict(escape_style = self.__esc_style) for t in tags ])
# #--------------------------------------------------------
# def _get_variant_patient_tags_table(self, data=u'?'):
# pass
#--------------------------------------------------------
# praxis related placeholders
#--------------------------------------------------------
def _get_variant_praxis(self, data=None):
options = data.split(self.__args_divider)
if 'select' in options:
options.remove('select')
branch = 'select branch'
else:
branch = gmPraxis.cPraxisBranch(aPK_obj = gmPraxis.gmCurrentPraxisBranch()['pk_praxis_branch'])
template = '%s'
if len(options) > 0:
template = options[0]
if template.strip() == '':
template = '%s'
return template % branch.fields_as_dict(escape_style = self.__esc_style)
#--------------------------------------------------------
def _get_variant_praxis_vcf(self, data=None):
cache_key = 'current_branch_vcf_path'
try:
vcf_name = self.__cache[cache_key]
_log.debug('cache hit (%s): [%s]', cache_key, vcf_name)
except KeyError:
vcf_name = gmPraxis.gmCurrentPraxisBranch().vcf
self.__cache[cache_key] = vcf_name
template = '%s'
if data.strip() != '':
template = data
return template % vcf_name
#--------------------------------------------------------
def _get_variant_praxis_mcf(self, data):
kwds = {'tmpl': '%s', 'fmt': 'txt'}
options = self._parse_ph_options (
options_data = data,
kwd_defaults = kwds
)
if options['fmt'] not in ['qr', 'mcf', 'txt']:
if self.debug:
return self._escape(_('praxis_mcf: invalid format (qr/mcf/txt)'))
return ''
if options['fmt'] == 'txt':
return template % self._escape(gmPraxis.gmCurrentPraxisBranch().MECARD)
if options['fmt'] == 'mcf':
return template % gmPraxis.gmCurrentPraxisBranch().export_as_mecard()
if options['fmt'] == 'qr':
qr_filename = gmTools.create_qrcode(text = gmPraxis.gmCurrentPraxisBranch().MECARD)
if qr_filename is None:
return self._escape('praxis_mcf-cannot_create_QR_code')
return options['tmpl'] % qr_filename
return None
#--------------------------------------------------------
def _get_variant_praxis_scan2pay(self, data):
kwds = {'fmt': 'qr'}
options = self._parse_ph_options (
options_data = data,
kwd_defaults = kwds
)
if options['fmt'] not in ['qr', 'txt']:
if self.debug:
return self._escape(_('praxis_scan2pay: invalid format (qr/txt)'))
return ''
data_str = gmPraxis.gmCurrentPraxisBranch().scan2pay_data
if data_str is None:
if self.debug:
return self._escape('praxis_scan2pay-cannot_create_data_file')
return ''
if options['fmt'] == 'txt':
return self._escape(data_str)
#return template % self._escape(gmPraxis.gmCurrentPraxisBranch().MECARD)
if options['fmt'] == 'qr':
qr_filename = gmTools.create_qrcode(text = data_str)
if qr_filename is None:
if self.debug:
return self._escape('praxis_scan2pay-cannot_create_QR_code')
return ''
#return template % qr_filename
return qr_filename
return None
#--------------------------------------------------------
def _get_variant_praxis_address(self, data=''):
options = data.split(self.__args_divider)
# formatting template
template = _('%(street)s %(number)s, %(postcode)s %(urb)s, %(l10n_region)s, %(l10n_country)s')
if len(options) > 0:
if options[0].strip() != '':
template = options[0]
adr = gmPraxis.gmCurrentPraxisBranch().address
if adr is None:
if self.debug:
return _('no address recorded')
return ''
try:
return template % adr.fields_as_dict(escape_style = self.__esc_style)
except Exception:
_log.exception('error formatting address')
_log.error('template: %s', template)
return None
#--------------------------------------------------------
def _get_variant_praxis_comm(self, data=None):
options = data.split(self.__args_divider)
comm_type = options[0]
template = '%(url)s'
if len(options) > 1:
template = options[1]
comms = gmPraxis.gmCurrentPraxisBranch().get_comm_channels(comm_medium = comm_type)
if len(comms) == 0:
if self.debug:
return self._escape(_('no URL for comm channel [%s]') % data)
return ''
return template % comms[0].fields_as_dict(escape_style = self.__esc_style)
#--------------------------------------------------------
def _get_variant_praxis_id(self, data=None):
options = data.split(self.__args_divider)
id_type = options[0].strip()
if id_type == '':
return self._escape('praxis external ID: type is missing')
if len(options) > 1:
issuer = options[1].strip()
if issuer == '':
issue = None
else:
issuer = None
if len(options) > 2:
template = options[2]
else:
template = '%(name)s: %(value)s (%(issuer)s)'
ids = gmPraxis.gmCurrentPraxisBranch().get_external_ids(id_type = id_type, issuer = issuer)
if len(ids) == 0:
if self.debug:
return self._escape(_('no external ID [%s] by [%s]') % (id_type, issuer))
return ''
return template % self._escape_dict_like(dict_like = ids[0], none_string = '')
#--------------------------------------------------------
# provider related placeholders
#--------------------------------------------------------
def _get_variant_current_provider(self, data=None):
prov = gmStaff.gmCurrentProvider()
tmp = '%s%s. %s' % (
gmTools.coalesce(prov['title'], '', '%s '),
prov['firstnames'][:1],
prov['lastnames']
)
return self._escape(tmp)
#--------------------------------------------------------
def _get_variant_current_provider_title(self, data=None):
if data is None:
template = u'%(title)s'
elif data.strip() == u'':
data = u'%(title)s'
return self._get_variant_current_provider_name(data = data)
#--------------------------------------------------------
def _get_variant_current_provider_firstnames(self, data=None):
if data is None:
data = u'%(firstnames)s'
elif data.strip() == u'':
data = u'%(firstnames)s'
return self._get_variant_current_provider_name(data = data)
#--------------------------------------------------------
def _get_variant_current_provider_lastnames(self, data=None):
if data is None:
data = u'%(lastnames)s'
elif data.strip() == u'':
data = u'%(lastnames)s'
return self._get_variant_current_provider_name(data = data)
#--------------------------------------------------------
def _get_variant_current_provider_name(self, data=None):
if data is None:
return [_('template is missing')]
if data.strip() == '':
return [_('template is empty')]
name = gmStaff.gmCurrentProvider().identity.get_active_name()
parts = {
'title': self._escape(gmTools.coalesce(name['title'], '')),
'firstnames': self._escape(name['firstnames']),
'lastnames': self._escape(name['lastnames']),
'preferred': self._escape(gmTools.coalesce(name['preferred'], ''))
}
return data % parts
#--------------------------------------------------------
def _get_variant_current_provider_external_id(self, data=''):
data_parts = data.split(self.__args_divider)
if len(data_parts) < 2:
return self._escape('current provider external ID: template is missing')
id_type = data_parts[0].strip()
if id_type == '':
return self._escape('current provider external ID: type is missing')
issuer = data_parts[1].strip()
if issuer == '':
return self._escape('current provider external ID: issuer is missing')
prov = gmStaff.gmCurrentProvider()
ids = prov.identity.get_external_ids(id_type = id_type, issuer = issuer)
if len(ids) == 0:
if self.debug:
return self._escape(_('no external ID [%s] by [%s]') % (id_type, issuer))
return ''
return self._escape(ids[0]['value'])
#--------------------------------------------------------
def _get_variant_primary_praxis_provider(self, data=None):
prov = self.pat.primary_provider
if prov is None:
return self._get_variant_current_provider()
title = gmTools.coalesce (
prov['title'],
gmPerson.map_gender2salutation(prov['gender'])
)
tmp = '%s %s. %s' % (
title,
prov['firstnames'][:1],
prov['lastnames']
)
return self._escape(tmp)
#--------------------------------------------------------
def _get_variant_primary_praxis_provider_external_id(self, data=''):
data_parts = data.split(self.__args_divider)
if len(data_parts) < 2:
return self._escape('primary in-praxis provider external ID: template is missing')
id_type = data_parts[0].strip()
if id_type == '':
return self._escape('primary in-praxis provider external ID: type is missing')
issuer = data_parts[1].strip()
if issuer == '':
return self._escape('primary in-praxis provider external ID: issuer is missing')
prov = self.pat.primary_provider
if prov is None:
if self.debug:
return self._escape(_('no primary in-praxis provider'))
return ''
ids = prov.identity.get_external_ids(id_type = id_type, issuer = issuer)
if len(ids) == 0:
if self.debug:
return self._escape(_('no external ID [%s] by [%s]') % (id_type, issuer))
return ''
return self._escape(ids[0]['value'])
#--------------------------------------------------------
def _get_variant_external_id(self, data=''):
data_parts = data.split(self.__args_divider)
if len(data_parts) < 2:
return self._escape('patient external ID: template is missing')
id_type = data_parts[0].strip()
if id_type == '':
return self._escape('patient external ID: type is missing')
issuer = data_parts[1].strip()
if issuer == '':
return self._escape('patient external ID: issuer is missing')
ids = self.pat.get_external_ids(id_type = id_type, issuer = issuer)
if len(ids) == 0:
if self.debug:
return self._escape(_('no external ID [%s] by [%s]') % (id_type, issuer))
return ''
return self._escape(ids[0]['value'])
#--------------------------------------------------------
def _get_variant_allergy_state(self, data=None):
allg_state = self.pat.emr.allergy_state
if allg_state['last_confirmed'] is None:
date_confirmed = ''
else:
date_confirmed = ' (%s)' % gmDateTime.pydt_strftime (
allg_state['last_confirmed'],
format = '%Y %B %d'
)
tmp = '%s%s' % (
allg_state.state_string,
date_confirmed
)
return self._escape(tmp)
#--------------------------------------------------------
def _get_variant_allergy_list(self, data=None):
if data is None:
return self._escape(_('template is missing'))
template, separator = data.split('//', 2)
return separator.join([ template % a.fields_as_dict(date_format = '%Y %b %d', escape_style = self.__esc_style) for a in self.pat.emr.get_allergies() ])
#--------------------------------------------------------
def _get_variant_allergies(self, data=None):
if data is None:
return self._escape(_('template is missing'))
return '\n'.join([ data % a.fields_as_dict(date_format = '%Y %b %d', escape_style = self.__esc_style) for a in self.pat.emr.get_allergies() ])
#--------------------------------------------------------
def _get_variant_current_meds_AMTS_enhanced(self, data=None):
return self._get_variant_current_meds_AMTS(data=data, strict=False)
#--------------------------------------------------------
def _get_variant_current_meds_AMTS(self, data=None, strict=True):
# select intakes
emr = self.pat.emr
from Gnumed.wxpython import gmMedicationWidgets
intakes2export = gmMedicationWidgets.manage_substance_intakes(emr = emr)
if intakes2export is None:
return ''
if len(intakes2export) == 0:
return ''
# make them unique:
unique_intakes = {}
for intake in intakes2export:
if intake['pk_drug_product'] is None:
unique_intakes[intake['pk_substance']] = intake
else:
unique_intakes[intake['product']] = intake
del intakes2export
unique_intakes = unique_intakes.values()
# create data files / datamatrix code files
self.__create_amts_datamatrix_files(intakes = unique_intakes)
# create AMTS-LaTeX per intake
intake_as_latex_rows = []
for intake in unique_intakes:
intake_as_latex_rows.append(intake._get_as_amts_latex(strict = strict))
del unique_intakes
# append allergy information
# - state
intake_as_latex_rows.extend(emr.allergy_state._get_as_amts_latex(strict = strict))
# - allergies
for allg in emr.get_allergies():
intake_as_latex_rows.append(allg._get_as_amts_latex(strict = strict))
# insert \newpage after each group of 15 rows
table_rows = intake_as_latex_rows[:15]
if len(intake_as_latex_rows) > 15:
table_rows.append('\\newpage')
table_rows.extend(intake_as_latex_rows[15:30])
if len(intake_as_latex_rows) > 30:
table_rows.append('\\newpage')
table_rows.extend(intake_as_latex_rows[30:45])
if strict:
return '\n'.join(table_rows)
# allow two more pages in enhanced mode
if len(intake_as_latex_rows) > 45:
table_rows.append('\\newpage')
table_rows.extend(intake_as_latex_rows[30:45])
if len(intake_as_latex_rows) > 60:
table_rows.append('\\newpage')
table_rows.extend(intake_as_latex_rows[30:45])
return '\n'.join(table_rows)
#--------------------------------------------------------
def __create_amts_datamatrix_files(self, intakes=None):
# setup dummy files
for idx in [1,2,3]:
self.set_placeholder(key = 'amts_data_file_%s' % idx, value = './missing-file.txt', known_only = False)
self.set_placeholder(key = 'amts_png_file_%s' % idx, value = './missing-file.png', known_only = False)
self.set_placeholder(key = 'amts_png_file_current_page', value = './missing-file-current-page.png', known_only = False)
self.set_placeholder(key = 'amts_png_file_utf8', value = './missing-file-utf8.png', known_only = False)
self.set_placeholder(key = 'amts_data_file_utf8', value = './missing-file-utf8.txt', known_only = False)
# find processor
found, dmtx_creator = gmShellAPI.detect_external_binary(binary = 'gm-create_datamatrix')
_log.debug(dmtx_creator)
if not found:
_log.error('gm-create_datamatrix(.bat/.exe) not found')
return
png_dir = gmTools.mk_sandbox_dir()
_log.debug('sandboxing AMTS datamatrix PNGs in: %s', png_dir)
from Gnumed.business import gmForms
# generate GNUmed-enhanced non-conformant data file and datamatrix
# for embedding (utf8, unabridged data fields)
amts_data_template_def_file = gmMedication.generate_amts_data_template_definition_file(strict = False)
_log.debug('amts data template definition file: %s', amts_data_template_def_file)
form = gmForms.cTextForm(template_file = amts_data_template_def_file)
# <S>ection with intakes</S>
amts_sections = '<S>%s</S>' % ''.join ([
i._get_as_amts_data(strict = False) for i in intakes
])
# <S>ection with allergy data</S>
emr = self.pat.emr
amts_sections += emr.allergy_state._get_as_amts_data(strict = False) % ''.join ([
a._get_as_amts_data(strict = False) for a in emr.get_allergies()
])
self.set_placeholder(key = 'amts_intakes_as_data_enhanced', value = amts_sections, known_only = False)
# self.set_placeholder(key = u'amts_check_symbol', value = gmMedication.calculate_amts_data_check_symbol(intakes = intakes), known_only = False)
self.set_placeholder(key = 'amts_total_pages', value = '1', known_only = False)
success = form.substitute_placeholders(data_source = self)
self.unset_placeholder(key = 'amts_intakes_as_data_enhanced')
# self.unset_placeholder(key = u'amts_check_symbol')
self.unset_placeholder(key = 'amts_total_pages')
if not success:
_log.error('cannot substitute into amts data file form template')
return
data_file = form.re_editable_filenames[0]
png_file = os.path.join(png_dir, 'gm4amts-datamatrix-utf8.png')
cmd = '%s %s %s' % (dmtx_creator, data_file, png_file)
success = gmShellAPI.run_command_in_shell(command = cmd, blocking = True)
if not success:
_log.error('error running [%s]' % cmd)
return
self.set_placeholder(key = 'amts_data_file_utf8', value = data_file, known_only = False)
self.set_placeholder(key = 'amts_png_file_utf8', value = png_file, known_only = False)
# generate conformant per-page files:
total_pages = (len(intakes) / 15.0)
if total_pages > int(total_pages):
total_pages += 1
total_pages = int(total_pages)
_log.debug('total pages: %s', total_pages)
png_file_base = os.path.join(png_dir, 'gm4amts-datamatrix-page-')
for this_page in range(1,total_pages+1):
intakes_this_page = intakes[(this_page-1)*15:this_page*15]
amts_data_template_def_file = gmMedication.generate_amts_data_template_definition_file(strict = True)
_log.debug('amts data template definition file: %s', amts_data_template_def_file)
form = gmForms.cTextForm(template_file = amts_data_template_def_file)
# <S>ection with intakes</S>
amts_sections = '<S>%s</S>' % ''.join ([
i._get_as_amts_data(strict = False) for i in intakes_this_page
])
if this_page == total_pages:
# <S>ection with allergy data</S>
emr = self.pat.emr
amts_sections += emr.allergy_state._get_as_amts_data(strict = False) % ''.join ([
a._get_as_amts_data(strict = False) for a in emr.get_allergies()
])
self.set_placeholder(key = 'amts_intakes_as_data', value = amts_sections, known_only = False)
# self.set_placeholder(key = u'amts_check_symbol', value = gmMedication.calculate_amts_data_check_symbol(intakes = intakes_this_page), known_only = False)
if total_pages == 1:
pg_idx = ''
else:
pg_idx = '%s' % this_page
self.set_placeholder(key = 'amts_page_idx', value = pg_idx, known_only = False)
self.set_placeholder(key = 'amts_total_pages', value = '%s' % total_pages, known_only = False)
success = form.substitute_placeholders(data_source = self)
self.unset_placeholder(key = 'amts_intakes_as_data')
# self.unset_placeholder(key = u'amts_check_symbol')
self.unset_placeholder(key = 'amts_page_idx')
self.unset_placeholder(key = 'amts_total_pages')
if not success:
_log.error('cannot substitute into amts data file form template')
return
data_file = form.re_editable_filenames[0]
png_file = '%s%s.png' % (png_file_base, this_page)
latin1_data_file = gmTools.recode_file (
source_file = data_file,
source_encoding = 'utf8',
target_encoding = 'latin1',
base_dir = os.path.split(data_file)[0]
)
cmd = '%s %s %s' % (dmtx_creator, latin1_data_file, png_file)
success = gmShellAPI.run_command_in_shell(command = cmd, blocking = True)
if not success:
_log.error('error running [%s]' % cmd)
return
# cache file names for later use in \embedfile
self.set_placeholder(key = 'amts_data_file_%s' % this_page, value = latin1_data_file, known_only = False)
self.set_placeholder(key = 'amts_png_file_%s' % this_page, value = png_file, known_only = False)
self.set_placeholder(key = 'amts_png_file_current_page', value = png_file_base + '\\thepage', known_only = False)
#--------------------------------------------------------
def _get_variant_current_meds_for_rx(self, data=None):
if data is None:
return self._escape(_('current_meds_for_rx: template is missing'))
emr = self.pat.emr
from Gnumed.wxpython import gmMedicationWidgets
current_meds = gmMedicationWidgets.manage_substance_intakes(emr = emr)
if current_meds is None:
return ''
intakes2show = {}
for intake in current_meds:
fields_dict = intake.fields_as_dict(date_format = '%Y %b %d', escape_style = self.__esc_style)
fields_dict['medically_formatted_start'] = self._escape(intake.medically_formatted_start)
if intake['pk_drug_product'] is None:
fields_dict['product'] = self._escape(_('generic %s') % fields_dict['substance'])
fields_dict['contains'] = self._escape('%s %s%s' % (fields_dict['substance'], fields_dict['amount'], fields_dict['unit']))
intakes2show[fields_dict['product']] = fields_dict
else:
comps = [ c.split('::') for c in intake.containing_drug['components'] ]
fields_dict['contains'] = self._escape('; '.join([ '%s %s%s' % (c[0], c[1], c[2]) for c in comps ]))
intakes2show[intake['product']] = fields_dict # this will make multi-component drugs unique
intakes2dispense = {}
for product, intake in intakes2show.items():
msg = _('Dispense how much/many of "%(product)s (%(contains)s)" ?') % intake
amount2dispense = wx.GetTextFromUser(msg, _('Amount to dispense ?'))
if amount2dispense == '':
continue
intake['amount2dispense'] = amount2dispense
intakes2dispense[product] = intake
return '\n'.join([ data % intake for intake in intakes2dispense.values() ])
#--------------------------------------------------------
def _get_variant_substance_abuse(self, data=None):
if data is None:
return self._escape(_('template is missing'))
template = data
from Gnumed.wxpython import gmHabitWidgets
abuses = gmHabitWidgets.manage_substance_abuse(patient = self.pat)
if abuses is None:
return ''
lines = []
for a in abuses:
fields = a.fields_as_dict(date_format = '%Y %b %d', escape_style = self.__esc_style)
fields['harmful_use_type'] = a.harmful_use_type_string
lines.append(template % fields)
return '\n'.join(lines)
#--------------------------------------------------------
def _get_variant_current_meds(self, data=None):
if data is None:
return self._escape(_('template is missing'))
parts = data.split(self.__args_divider)
template = parts[0]
ask_user = False
if len(parts) > 1:
ask_user = (parts[1] == 'select')
emr = self.pat.emr
if ask_user:
from Gnumed.wxpython import gmMedicationWidgets
current_meds = gmMedicationWidgets.manage_substance_intakes(emr = emr)
if current_meds is None:
return ''
else:
current_meds = emr.get_current_medications (
include_inactive = False,
include_unapproved = True,
order_by = 'product, substance'
)
if len(current_meds) == 0:
return ''
lines = []
for m in current_meds:
data = m.fields_as_dict(date_format = '%Y %b %d', escape_style = self.__esc_style)
data['medically_formatted_start'] = self._escape(m.medically_formatted_start)
lines.append(template % data)
return '\n'.join(lines)
#--------------------------------------------------------
def _get_variant_current_meds_table(self, data=None):
return gmMedication.format_substance_intake (
emr = self.pat.emr,
output_format = self.__esc_style,
table_type = 'by-product'
)
#--------------------------------------------------------
def _get_variant_current_meds_notes(self, data=None):
return gmMedication.format_substance_intake_notes (
emr = self.pat.emr,
output_format = self.__esc_style,
table_type = 'by-product'
)
#--------------------------------------------------------
def _get_variant_lab_table(self, data=None):
return gmPathLab.format_test_results (
results = self.pat.emr.get_test_results_by_date(),
output_format = self.__esc_style
)
#--------------------------------------------------------
def _get_variant_test_results(self, data=None):
template = ''
date_format = '%Y %b %d %H:%M'
separator = '\n'
options = data.split(self.__args_divider)
try:
template = options[0].strip()
date_format = options[1]
separator = options[2]
except IndexError:
pass
if date_format.strip() == '':
date_format = '%Y %b %d %H:%M'
if separator.strip() == '':
separator = '\n'
from Gnumed.wxpython.gmMeasurementWidgets import manage_measurements
results = manage_measurements(single_selection = False, emr = self.pat.emr)
if results is None:
if self.debug:
return self._escape(_('no results for this patient (available or selected)'))
return ''
if template == '':
return (separator + separator).join([ self._escape(r.format(date_format = date_format)) for r in results ])
return separator.join([ template % r.fields_as_dict(date_format = date_format, escape_style = self.__esc_style) for r in results ])
#--------------------------------------------------------
def _get_variant_most_recent_test_results(self, data=None):
most_recent = gmPathLab.get_most_recent_result_for_test_types (
pk_test_types = None, # we want most recent results for *all* tests
pk_patient = self.pat.ID,
consider_meta_type = True,
order_by = 'unified_name'
)
if len(most_recent) == 0:
if self.debug:
return self._escape(_('no results for this patient available'))
return ''
from Gnumed.wxpython.gmMeasurementWidgets import manage_measurements
results2show = manage_measurements (
single_selection = False,
measurements2manage = most_recent,
message = _('Most recent results: select the ones to include')
)
if results2show is None:
if self.debug:
return self._escape(_('no results for this patient selected'))
return ''
kwds = {'tmpl': '', 'dfmt': '%Y %b %d', 'sep': '\n'}
options = self._parse_ph_options (
options_data = data,
kwd_defaults = kwds
)
if options['tmpl'] == '':
return (options['sep'] + options['sep']).join([ self._escape(r.format(date_format = options['dfmt'])) for r in results2show ])
return options['sep'].join([ options['tmpl'] % r.fields_as_dict(date_format = options['dfmt'], escape_style = self.__esc_style) for r in results2show ])
#--------------------------------------------------------
def _get_variant_latest_vaccs_table(self, data=None):
return gmVaccination.format_latest_vaccinations (
output_format = self.__esc_style,
emr = self.pat.emr
)
#--------------------------------------------------------
def _get_variant_vaccination_history(self, data=None):
options = data.split(self.__args_divider)
template = options[0]
if len(options) > 1:
date_format = options[1]
else:
date_format = '%Y %b %d'
vaccinations_as_dict = []
for v in self.pat.emr.get_vaccinations(order_by = 'date_given DESC, vaccine'):
v_as_dict = v.fields_as_dict(date_format = date_format, escape_style = self.__esc_style)
v_as_dict['l10n_indications'] = [ ind['l10n_indication'] for ind in v['indications'] ]
vaccinations_as_dict.append(v_as_dict)
return u'\n'.join([ template % v for v in vaccinations_as_dict ])
#--------------------------------------------------------
def _get_variant_PHX(self, data=None):
if data is None:
if self.debug:
_log.error('PHX: missing placeholder arguments')
return self._escape(_('PHX: Invalid placeholder options.'))
return ''
_log.debug('arguments: %s', data)
data_parts = data.split(self.__args_divider)
template = '%s'
separator = '\n'
date_format = '%Y %b %d'
try:
template = data_parts[0]
separator = data_parts[1]
date_format = data_parts[2]
except IndexError:
pass
phxs = gmEMRStructWidgets.select_health_issues(emr = self.pat.emr)
if phxs is None:
if self.debug:
return self._escape(_('no PHX for this patient (available or selected)'))
return ''
return separator.join ([
template % phx.fields_as_dict (
date_format = date_format,
escape_style = self.__esc_style,
bool_strings = (self._escape(_('yes')), self._escape(_('no')))
) for phx in phxs
])
#--------------------------------------------------------
def _get_variant_problems(self, data=None):
if data is None:
return self._escape(_('template is missing'))
probs = self.pat.emr.get_problems()
return '\n'.join([ data % p.fields_as_dict(date_format = '%Y %b %d', escape_style = self.__esc_style) for p in probs ])
#--------------------------------------------------------
def _get_variant_diagnoses(self, data=None):
if data is None:
return self._escape(_('template is missing'))
template = data
dxs = self.pat.emr.candidate_diagnoses
if len(dxs) == 0:
_log.debug('no diagnoses available')
return ''
selected = gmListWidgets.get_choices_from_list (
msg = _('Select the relevant diagnoses:'),
caption = _('Diagnosis selection'),
columns = [ _('Diagnosis'), _('Marked confidential'), _('Certainty'), _('Source') ],
choices = [[
dx['diagnosis'],
gmTools.bool2subst(dx['explicitely_confidential'], _('yes'), _('no'), _('unknown')),
gmTools.coalesce(dx['diagnostic_certainty_classification'], ''),
dx['source']
] for dx in dxs
],
data = dxs,
single_selection = False,
can_return_empty = True
)
if selected is None:
_log.debug('user did not select any diagnoses')
return ''
if len(selected) == 0:
_log.debug('user did not select any diagnoses')
return ''
#return template % {'diagnosis': u'', 'diagnostic_certainty_classification': u''}
return '\n'.join(template % self._escape_dict_like(dx, none_string = '?', bool_strings = [_('yes'), _('no')]) for dx in selected)
#--------------------------------------------------------
def _get_variant_today(self, data='%Y %b %d'):
return self._escape(gmDateTime.pydt_now_here().strftime(data))
#--------------------------------------------------------
def _get_variant_tex_escape(self, data=None):
return gmTools.tex_escape_string(text = data)
#--------------------------------------------------------
def _get_variant_url_escape(self, data=None):
return self._escape(urllib.parse.quote(data.encode('utf8')))
#--------------------------------------------------------
def _get_variant_text_snippet(self, data=None):
data_parts = data.split(self.__args_divider)
keyword = data_parts[0]
template = '%s'
if len(data_parts) > 1:
template = data_parts[1]
expansion = gmKeywordExpansionWidgets.expand_keyword(keyword = keyword, show_list_if_needed = True)
if expansion is None:
if self.debug:
return self._escape(_('no textual expansion found for keyword <%s>') % keyword)
return ''
#return template % self._escape(expansion)
return template % expansion
#--------------------------------------------------------
def _get_variant_data_snippet(self, data=None):
parts = data.split(self.__args_divider)
keyword = parts[0]
template = '%s'
target_mime = None
target_ext = None
if len(parts) > 1:
template = parts[1]
if len(parts) > 2:
if parts[2].strip() != '':
target_mime = parts[2].strip()
if len(parts) > 3:
if parts[3].strip() != '':
target_ext = parts[3].strip()
expansion = gmKeywordExpansion.get_expansion (
keyword = keyword,
textual_only = False,
binary_only = True
)
if expansion is None:
if self.debug:
return self._escape(_('no binary expansion found for keyword <%s>') % keyword)
return ''
saved_fname = expansion.save_to_file()
if saved_fname is None:
if self.debug:
return self._escape(_('cannot export data of binary expansion keyword <%s>') % keyword)
return ''
if expansion['is_encrypted']:
pwd = wx.GetPasswordFromUser (
message = _('Enter your GnuPG passphrase for decryption of [%s]') % expansion['keyword'],
caption = _('GnuPG passphrase prompt'),
default_value = ''
)
saved_fname = gmCrypto.gpg_decrypt_file(filename = saved_fname, passphrase = pwd)
if saved_fname is None:
if self.debug:
return self._escape(_('cannot decrypt data of binary expansion keyword <%s>') % keyword)
return ''
if target_mime is None:
return template % saved_fname
converted_fname = gmMimeLib.convert_file(filename = saved_fname, target_mime = target_mime, target_extension = target_ext)
if converted_fname is None:
if self.debug:
return self._escape(_('cannot convert data of binary expansion keyword <%s>') % keyword)
# hoping that the target can cope:
return template % saved_fname
return template % converted_fname
#--------------------------------------------------------
def _get_variant_qrcode(self, data=None):
options = data.split(self.__args_divider)
if len(options) == 0:
return None
text4qr = options[0]
if len(options) > 1:
template = options[1]
else:
template = u'%s'
qr_filename = gmTools.create_qrcode(text = text4qr)
if qr_filename is None:
return self._escape('cannot_create_QR_code')
return template % qr_filename
#--------------------------------------------------------
def _get_variant_range_of(self, data=None):
if data is None:
return None
# wrapper code already takes care of actually
# selecting the range so all we need to do here
# is to return the data itself
return data
#--------------------------------------------------------
def _get_variant_if_not_empty(self, data=None):
if data is None:
return None
parts = data.split(self.__args_divider)
if len(parts) < 3:
return 'IF_NOT_EMPTY lacks <instead> definition'
txt = parts[0]
template = parts[1]
instead = parts[2]
if txt.strip() == '':
return instead
if '%s' in template:
return template % txt
return template
#--------------------------------------------------------
def _get_variant_if_debugging(self, data=None):
if data is None:
return None
parts = data.split(self.__args_divider)
if len(parts) < 2:
return self._escape(u'IF_DEBUGGING lacks proper definition')
debug_str = parts[0]
non_debug_str = parts[1]
if self.debug:
return debug_str
return non_debug_str
#--------------------------------------------------------
def _get_variant_free_text(self, data=None):
if data is None:
parts = []
msg = _('generic text')
cache_key = 'free_text::%s' % datetime.datetime.now()
else:
parts = data.split(self.__args_divider)
msg = parts[0]
cache_key = 'free_text::%s' % msg
try:
return self.__cache[cache_key]
except KeyError:
pass
if len(parts) > 1:
preset = parts[1]
else:
preset = ''
dlg = gmGuiHelpers.cMultilineTextEntryDlg (
None,
-1,
title = _('Replacing <free_text> placeholder'),
msg = _('Below you can enter free text.\n\n [%s]') % msg,
text = preset
)
dlg.enable_user_formatting = True
decision = dlg.ShowModal()
text = dlg.value.strip()
is_user_formatted = dlg.is_user_formatted
dlg.DestroyLater()
if decision != wx.ID_SAVE:
if self.debug:
return self._escape(_('Text input cancelled by user.'))
return self._escape('')
# user knows "best"
if is_user_formatted:
self.__cache[cache_key] = text
return text
text = self._escape(text)
self.__cache[cache_key] = text
return text
#--------------------------------------------------------
def _get_variant_bill(self, data=None):
try:
bill = self.__cache['bill']
except KeyError:
from Gnumed.wxpython import gmBillingWidgets
bill = gmBillingWidgets.manage_bills(patient = self.pat)
if bill is None:
if self.debug:
return self._escape(_('no bill selected'))
return ''
self.__cache['bill'] = bill
parts = data.split(self.__args_divider)
template = parts[0]
if len(parts) > 1:
date_format = parts[1]
else:
date_format = '%Y %B %d'
return template % bill.fields_as_dict(date_format = date_format, escape_style = self.__esc_style)
#--------------------------------------------------------
def _get_variant_bill_scan2pay(self, data=None):
try:
bill = self.__cache['bill']
except KeyError:
from Gnumed.wxpython import gmBillingWidgets
bill = gmBillingWidgets.manage_bills(patient = self.pat)
if bill is None:
if self.debug:
return self._escape(_('no bill selected'))
return ''
self.__cache['bill'] = bill
kwds = {'fmt': 'qr'}
options = self._parse_ph_options (
options_data = data,
kwd_defaults = kwds
)
format = options['fmt']
if format not in ['qr', 'txt']:
if self.debug:
return self._escape(_('praxis_scan2pay: invalid format (qr/txt)'))
return ''
from Gnumed.business import gmBilling
data_str = gmBilling.get_scan2pay_data (
gmPraxis.gmCurrentPraxisBranch(),
bill,
provider = gmStaff.gmCurrentProvider()
)
if data_str is None:
if self.debug:
return self._escape('bill_scan2pay-cannot_create_data_file')
return ''
if format == 'txt':
return self._escape(data_str)
if format == 'qr':
qr_filename = gmTools.create_qrcode(text = data_str)
if qr_filename is not None:
return qr_filename
if self.debug:
return self._escape('bill_scan2pay-cannot_create_QR_code')
return ''
return None
#--------------------------------------------------------
def _get_variant_bill_item(self, data=None):
try:
bill = self.__cache['bill']
except KeyError:
from Gnumed.wxpython import gmBillingWidgets
bill = gmBillingWidgets.manage_bills(patient = self.pat)
if bill is None:
if self.debug:
return self._escape(_('no bill selected'))
return ''
self.__cache['bill'] = bill
parts = data.split(self.__args_divider)
template = parts[0]
if len(parts) > 1:
date_format = parts[1]
else:
date_format = '%Y %B %d'
return '\n'.join([ template % i.fields_as_dict(date_format = date_format, escape_style = self.__esc_style) for i in bill.bill_items ])
#--------------------------------------------------------
def __get_variant_bill_adr_part(self, data=None, part=None):
try:
bill = self.__cache['bill']
except KeyError:
from Gnumed.wxpython import gmBillingWidgets
bill = gmBillingWidgets.manage_bills(patient = self.pat)
if bill is None:
if self.debug:
return self._escape(_('no bill selected'))
return ''
self.__cache['bill'] = bill
self.__cache['bill-adr'] = bill.address
try:
bill_adr = self.__cache['bill-adr']
except KeyError:
bill_adr = bill.address
self.__cache['bill-adr'] = bill_adr
if bill_adr is None:
if self.debug:
return self._escape(_('[%s] bill has no address') % part)
return ''
if bill_adr[part] is None:
return self._escape('')
if data is None:
return self._escape(bill_adr[part])
if data == '':
return self._escape(bill_adr[part])
return data % self._escape(bill_adr[part])
#--------------------------------------------------------
def _get_variant_bill_adr_street(self, data='?'):
return self.__get_variant_bill_adr_part(data = data, part = 'street')
#--------------------------------------------------------
def _get_variant_bill_adr_number(self, data='?'):
return self.__get_variant_bill_adr_part(data = data, part = 'number')
#--------------------------------------------------------
def _get_variant_bill_adr_subunit(self, data='?'):
return self.__get_variant_bill_adr_part(data = data, part = 'subunit')
#--------------------------------------------------------
def _get_variant_bill_adr_location(self, data='?'):
return self.__get_variant_bill_adr_part(data = data, part = 'urb')
#--------------------------------------------------------
def _get_variant_bill_adr_suburb(self, data='?'):
return self.__get_variant_bill_adr_part(data = data, part = 'suburb')
#--------------------------------------------------------
def _get_variant_bill_adr_postcode(self, data='?'):
return self.__get_variant_bill_adr_part(data = data, part = 'postcode')
#--------------------------------------------------------
def _get_variant_bill_adr_region(self, data='?'):
return self.__get_variant_bill_adr_part(data = data, part = 'l10n_region')
#--------------------------------------------------------
def _get_variant_bill_adr_country(self, data='?'):
return self.__get_variant_bill_adr_part(data = data, part = 'l10n_country')
#--------------------------------------------------------
# internal helpers
#--------------------------------------------------------
def _parse_ph_options__old(self, option_defs:dict=None, options_string:str=None, ignore_positional_options:bool=True) -> tuple:
"""Parse a string for options and values.
Options must be separated by *self.__args_divider*.
Each option must be of the form 'name=value', where
value _can_ contain more '='s.
If an option does not contain a '=' it is considered
a _positional_ option and possibly returned as-is.
Args:
option_defs: {'option name in placeholder string': 'default value for option', ...}
It _can_ contain a key __legacy_options__ which will be filled
with positional options in the order they are found, if any.
options_str: the text to parse for option values
ignore_positional_options: whether or not to return any positional (non-keyword) options found
Returns:
A tuple of values in the order of option_defs -> keys. The
caller can rely on order and count.
If *ignore_positional_options* is False
positional options will be included in the
result as a (possibly empty) list.
If *option_defs* contains a keyword
__legacy_options__ the positional options list
will be returned at that position within the
result, else the list will be appended to the end
of the results.
"""
assert (option_defs is not None), '<option_defs> must not be None'
assert (options_string is not None), '<options_string> must not be None'
if ignore_positional_options and ('__legacy_options__' in option_defs):
raise AssertionError("<ignore_positional_options>=True but '__legacy_options__' found in <option_defs>")
_log.debug('option defaults: %s', option_defs)
_log.debug('options: %s', options_string)
legacy_options = []
options2return = option_defs.copy()
options = options_string.split(self.__args_divider)
for opt in options:
opt_parts = opt.split('=', 1)
if len(opt_parts) == 1:
_log.warning('[%s] -> legacy positional option', opt)
legacy_options.append(opt_parts[0])
continue
opt_name = opt_parts[0].strip()
if opt_name not in option_defs:
# if we would not ignore this option - as seems
# tempting since the definition itself is fully
# valid - we would expand the result tuple beyond
# what is expected by the caller, thusly risking
# an exception upstream
_log.warning('[%s] -> unexpected kwd option, ignoring', opt_name)
continue
options2return[opt_name] = opt_parts[1]
_log.debug('[%s] -> kwd option, value [%s]', opt, opt_parts[1])
if ignore_positional_options:
_log.warning('ignoring legacy positional options, if any: %s', legacy_options)
else:
_log.debug('legacy positional options found: %s', legacy_options)
options2return['__legacy_options__'] = legacy_options
_log.debug('options found: %s', options2return)
return tuple([ options2return[o_name] for o_name in options2return ])
#--------------------------------------------------------
def _parse_ph_options(self, options_data:str=None, switch_defaults:dict=None, kwd_defaults:dict=None, pos_defaults:dict=None) -> dict:
"""Parse a string for options and values.
Options must be separated by *self.__args_divider*.
Option types:
Switches: Options which by their existence toggle their default. Think _select_, _display_, or _verbose_.
Keywords: Must contain an option name, followed by a '=', followed by a value. Think 'template=%s'. The value _can_ contain more '='s.
Positionals: Options which contain only a value. Their name is defined by their _position_ within the option the options data.
Note:
* Positional defaults override keyword defaults override switch defaults of the same name.
* Given switches override keyword defaults of the same name.
* Given keyword values override switches (given or default) of the same name.
* Unexpected keywords (not in *kwd_defaults*) are considered positionals.
* Given positionals override keyword/switches (given or default) of the same name.
Args:
options_data: The text to parse for options and values.
switch_defaults: Defaults for switch options. All options to be detected as switches must be listed here.
kwd_defaults: Defaults for keyword options. Example: {'option name in placeholder string': 'default value for option', ...}.
pos_defaults: Defaults for positional options. The keys define the option names. Values will be taken from the options data, or from the defaults.
Returns:
A dictionary containing all the defined options
and their values. Values come from either the
options data, or else their defined defaults.
Unaccounted-for options are returned as a
(possibly empty) list under the name
'__undefined_options__'.
"""
assert (options_data is not None), '<options_data> must not be None'
_log.debug('parsing for option values: [%s]', options_data)
options2return = {}
if switch_defaults:
options2return.update(switch_defaults)
if kwd_defaults:
options2return.update(kwd_defaults)
if pos_defaults:
options2return.update(pos_defaults)
options2return['__undefined_options__'] = []
if options_data.strip() == '':
_log.debug('returning defaults')
return options2return
options_given = options_data.split(self.__args_divider)
_log.debug('options: %s', options_given)
if switch_defaults:
_log.debug('switches: %s', switch_defaults)
for switch in switch_defaults:
if switch in options_given:
options2return[switch] = not switch_defaults[switch]
options_given.remove(switch)
_log.debug('switch [%s]: default [%s], value [%s]', switch, switch_defaults[switch], options2return[switch])
_log.debug('options after switch parsing: %s', options_given)
if kwd_defaults:
_log.debug('kwds: %s', kwd_defaults)
for opt in options_given.copy():
opt_parts = opt.split('=', 1)
if len(opt_parts) == 1:
# positional non-switch option, skip for later
continue
opt_name = opt_parts[0].strip()
if opt_name not in kwd_defaults:
#_log.warning('kwd option [%s] -> unexpected, skipping', opt)
# potentially positional non-switch option containing a '=' by happenstance, skip for later
continue
options2return[opt_name] = opt_parts[1]
options_given.remove(opt)
_log.debug('options after kwds parsing: %s', options_given)
remaining_positionals = options_given.copy()
if pos_defaults:
_log.debug('positionals: %s', pos_defaults)
positionals_names = list(pos_defaults.keys())
for opt_idx in range(len(options_given)):
opt_val = options_given[opt_idx]
try:
options2return[positionals_names[opt_idx]] = opt_val
remaining_positionals.pop(0)
except IndexError:
pass # undefined positional, already taken care of
if remaining_positionals:
_log.error('unconsumed positional options: %s', remaining_positionals)
options2return['__undefined_options__'] = remaining_positionals
_log.debug('options found: %s', options2return)
return options2return
#--------------------------------------------------------
def _escape(self, text=None):
if self.__esc_func is None:
return text
assert (text is not None), 'text=None passed to _escape()'
return self.__esc_func(text)
#--------------------------------------------------------
def _escape_dict_like(self, dict_like=None, date_format='%Y %b %d %H:%M', none_string='', bool_strings=None):
if bool_strings is None:
bools = {True: _('true'), False: _('false')}
else:
bools = {True: bool_strings[0], False: bool_strings[1]}
dict2return = {}
for key in dict(dict_like):
# FIXME: harden against BYTEA fields
#if type(self._payload[self._idx[key]]) == ...
# dict2return[key] = _('<%s bytes of binary data>') % len(self._payload[self._idx[key]])
# continue
val = dict_like[key]
if val is None:
dict2return[key] = none_string
continue
if isinstance(val, bool):
dict2return[key] = bools[val]
continue
if isinstance(val, datetime.datetime):
dict2return[key] = gmDateTime.pydt_strftime(val, format = date_format)
if self.__esc_style in ['latex', 'tex']:
dict2return[key] = gmTools.tex_escape_string(dict2return[key])
elif self.__esc_style in ['xetex', 'xelatex']:
dict2return[key] = gmTools.xetex_escape_string(dict2return[key])
continue
try:
dict2return[key] = str(val, encoding = 'utf8', errors = 'replace')
except TypeError:
try:
dict2return[key] = str(val)
except (UnicodeDecodeError, TypeError):
val = '%s' % str(val)
dict2return[key] = val.decode('utf8', 'replace')
if self.__esc_style in ['latex', 'tex']:
dict2return[key] = gmTools.tex_escape_string(dict2return[key])
elif self.__esc_style in ['xetex', 'xelatex']:
dict2return[key] = gmTools.xetex_escape_string(dict2return[key])
return dict2return
#---------------------------------------------------------------------
def test_placeholders():
_log.debug('testing for placeholders with pattern: %s', first_pass_placeholder_regex)
data_source = gmPlaceholderHandler()
original_line = ''
while True:
# get input from user
line = wx.GetTextFromUser (
_('Enter some text containing a placeholder:'),
_('Testing placeholders'),
centre = True,
default_value = original_line
)
if line.strip() == '':
break
original_line = line
# replace
placeholders_in_line = regex.findall(first_pass_placeholder_regex, line, regex.IGNORECASE)
if len(placeholders_in_line) == 0:
continue
for placeholder in placeholders_in_line:
try:
val = data_source[placeholder]
except Exception:
val = _('error with placeholder [%s]') % placeholder
if val is None:
val = _('error with placeholder [%s]') % placeholder
line = line.replace(placeholder, val)
# show
msg = _(
'Input: %s\n'
'\n'
'Output:\n'
'%s'
) % (
original_line,
line
)
gmGuiHelpers.gm_show_info (
title = _('Testing placeholders'),
info = msg
)
#=====================================================================
class cMacroPrimitives:
"""Functions a macro can legally use.
An instance of this class is passed to the GNUmed scripting
listener. Hence, all actions a macro can legally take must
be defined in this class. Thus we achieve some screening for
security and also thread safety handling.
"""
#-----------------------------------------------------------------
def __init__(self, personality = None):
if personality is None:
raise gmExceptions.ConstructorError('must specify personality')
self.__personality = personality
self.__attached = 0
self._get_source_personality = None
self.__user_done = False
self.__user_answer = 'no answer yet'
self.__pat = gmPerson.gmCurrentPatient()
self.__auth_cookie = str(random.random())
self.__pat_lock_cookie = str(random.random())
self.__lock_after_load_cookie = str(random.random())
_log.info('slave mode personality is [%s]', personality)
#-----------------------------------------------------------------
# public API
#-----------------------------------------------------------------
def attach(self, personality = None):
if self.__attached:
_log.error('attach with [%s] rejected, already serving a client', personality)
return (0, _('attach rejected, already serving a client'))
if personality != self.__personality:
_log.error('rejecting attach to personality [%s], only servicing [%s]' % (personality, self.__personality))
return (0, _('attach to personality [%s] rejected') % personality)
self.__attached = 1
self.__auth_cookie = str(random.random())
return (1, self.__auth_cookie)
#-----------------------------------------------------------------
def detach(self, auth_cookie=None):
if not self.__attached:
return 1
if auth_cookie != self.__auth_cookie:
_log.error('rejecting detach() with cookie [%s]' % auth_cookie)
return 0
self.__attached = 0
return 1
#-----------------------------------------------------------------
def force_detach(self):
if not self.__attached:
return 1
self.__user_done = False
# FIXME: use self.__sync_cookie for syncing with user interaction
wx.CallAfter(self._force_detach)
return 1
#-----------------------------------------------------------------
def version(self):
ver = _cfg.get(option = 'client_version')
return "GNUmed %s, %s $Revision: 1.51 $" % (ver, self.__class__.__name__)
#-----------------------------------------------------------------
def shutdown_gnumed(self, auth_cookie=None, forced=False):
"""Shuts down this client instance."""
if not self.__attached:
return 0
if auth_cookie != self.__auth_cookie:
_log.error('non-authenticated shutdown_gnumed()')
return 0
wx.CallAfter(self._shutdown_gnumed, forced)
return 1
#-----------------------------------------------------------------
def raise_gnumed(self, auth_cookie = None):
"""Raise ourselves to the top of the desktop."""
if not self.__attached:
return 0
if auth_cookie != self.__auth_cookie:
_log.error('non-authenticated raise_gnumed()')
return 0
return "cMacroPrimitives.raise_gnumed() not implemented"
#-----------------------------------------------------------------
def get_loaded_plugins(self, auth_cookie = None):
if not self.__attached:
return 0
if auth_cookie != self.__auth_cookie:
_log.error('non-authenticated get_loaded_plugins()')
return 0
gb = gmGuiBroker.GuiBroker()
return list(gb['horstspace.notebook.gui'])
#-----------------------------------------------------------------
def raise_notebook_plugin(self, auth_cookie = None, a_plugin = None):
"""Raise a notebook plugin within GNUmed."""
if not self.__attached:
return 0
if auth_cookie != self.__auth_cookie:
_log.error('non-authenticated raise_notebook_plugin()')
return 0
# FIXME: use semaphore
wx.CallAfter(gmPlugin.raise_notebook_plugin, a_plugin)
return 1
#-----------------------------------------------------------------
def load_patient_from_external_source(self, auth_cookie = None):
"""Load external patient, perhaps create it.
Callers must use get_user_answer() to get status information.
It is unsafe to proceed without knowing the completion state as
the controlled client may be waiting for user input from a
patient selection list.
"""
if not self.__attached:
return (0, _('request rejected, you are not attach()ed'))
if auth_cookie != self.__auth_cookie:
_log.error('non-authenticated load_patient_from_external_source()')
return (0, _('rejected load_patient_from_external_source(), not authenticated'))
if self.__pat.locked:
_log.error('patient is locked, cannot load from external source')
return (0, _('current patient is locked'))
self.__user_done = False
wx.CallAfter(self._load_patient_from_external_source)
self.__lock_after_load_cookie = str(random.random())
return (1, self.__lock_after_load_cookie)
#-----------------------------------------------------------------
def lock_loaded_patient(self, auth_cookie = None, lock_after_load_cookie = None):
if not self.__attached:
return (0, _('request rejected, you are not attach()ed'))
if auth_cookie != self.__auth_cookie:
_log.error('non-authenticated lock_load_patient()')
return (0, _('rejected lock_load_patient(), not authenticated'))
# FIXME: ask user what to do about wrong cookie
if lock_after_load_cookie != self.__lock_after_load_cookie:
_log.warning('patient lock-after-load request rejected due to wrong cookie [%s]' % lock_after_load_cookie)
return (0, 'patient lock-after-load request rejected, wrong cookie provided')
self.__pat.locked = True
self.__pat_lock_cookie = str(random.random())
return (1, self.__pat_lock_cookie)
#-----------------------------------------------------------------
def lock_into_patient(self, auth_cookie = None, search_params = None):
if not self.__attached:
return (0, _('request rejected, you are not attach()ed'))
if auth_cookie != self.__auth_cookie:
_log.error('non-authenticated lock_into_patient()')
return (0, _('rejected lock_into_patient(), not authenticated'))
if self.__pat.locked:
_log.error('patient is already locked')
return (0, _('already locked into a patient'))
searcher = gmPersonSearch.cPatientSearcher_SQL()
if type(search_params) == dict:
idents = searcher.get_identities(search_dict=search_params)
raise Exception("must use dto, not search_dict")
else:
idents = searcher.get_identities(search_term=search_params)
if idents is None:
return (0, _('error searching for patient with [%s]/%s') % (search_term, search_dict))
if len(idents) == 0:
return (0, _('no patient found for [%s]/%s') % (search_term, search_dict))
# FIXME: let user select patient
if len(idents) > 1:
return (0, _('several matching patients found for [%s]/%s') % (search_term, search_dict))
if not gmPatSearchWidgets.set_active_patient(patient = idents[0]):
return (0, _('cannot activate patient [%s] (%s/%s)') % (str(idents[0]), search_term, search_dict))
self.__pat.locked = True
self.__pat_lock_cookie = str(random.random())
return (1, self.__pat_lock_cookie)
#-----------------------------------------------------------------
def unlock_patient(self, auth_cookie = None, unlock_cookie = None):
if not self.__attached:
return (0, _('request rejected, you are not attach()ed'))
if auth_cookie != self.__auth_cookie:
_log.error('non-authenticated unlock_patient()')
return (0, _('rejected unlock_patient, not authenticated'))
# we ain't locked anyways, so succeed
if not self.__pat.locked:
return (1, '')
# FIXME: ask user what to do about wrong cookie
if unlock_cookie != self.__pat_lock_cookie:
_log.warning('patient unlock request rejected due to wrong cookie [%s]' % unlock_cookie)
return (0, 'patient unlock request rejected, wrong cookie provided')
self.__pat.locked = False
return (1, '')
#-----------------------------------------------------------------
def assume_staff_identity(self, auth_cookie = None, staff_name = "Dr.Jekyll", staff_creds = None):
if not self.__attached:
return 0
if auth_cookie != self.__auth_cookie:
_log.error('non-authenticated select_identity()')
return 0
return "cMacroPrimitives.assume_staff_identity() not implemented"
#-----------------------------------------------------------------
def get_user_answer(self):
if not self.__user_done:
return (0, 'still waiting')
self.__user_done = False
return (1, self.__user_answer)
#-----------------------------------------------------------------
# internal API
#-----------------------------------------------------------------
def _force_detach(self):
msg = _(
'Someone tries to forcibly break the existing\n'
'controlling connection. This may or may not\n'
'have legitimate reasons.\n\n'
'Do you want to allow breaking the connection ?'
)
can_break_conn = gmGuiHelpers.gm_show_question (
aMessage = msg,
aTitle = _('forced detach attempt')
)
if can_break_conn:
self.__user_answer = 1
else:
self.__user_answer = 0
self.__user_done = True
if can_break_conn:
self.__pat.locked = False
self.__attached = 0
return 1
#-----------------------------------------------------------------
def _shutdown_gnumed(self, forced=False):
top_win = wx.GetApp().GetTopWindow()
if forced:
top_win.DestroyLater()
else:
top_win.Close()
#-----------------------------------------------------------------
def _load_patient_from_external_source(self):
patient = gmPatSearchWidgets.get_person_from_external_sources(search_immediately = True, activate_immediately = True)
if patient is not None:
self.__user_answer = 1
else:
self.__user_answer = 0
self.__user_done = True
return 1
#=====================================================================
# main
#=====================================================================
if __name__ == '__main__':
if len(sys.argv) < 2:
sys.exit()
if sys.argv[1] != 'test':
sys.exit()
gmI18N.activate_locale()
gmI18N.install_domain()
#--------------------------------------------------------
def test_placeholders():
handler = gmPlaceholderHandler()
handler.debug = True
for placeholder in ['a', 'b']:
print(handler[placeholder])
pat = gmPersonSearch.ask_for_patient()
if pat is None:
return
gmPatSearchWidgets.set_active_patient(patient = pat)
print('DOB (YYYY-MM-DD):', handler['date_of_birth::%Y-%m-%d'])
app = wx.PyWidgetTester(size = (200, 50))
ph = 'progress_notes::ap'
print('%s: %s' % (ph, handler[ph]))
#--------------------------------------------------------
def test_new_variant_placeholders():
tests = [
# should work:
'$<lastname>$',
'$<lastname::::3>$',
'$<name::%(title)s %(firstnames)s%(preferred)s%(lastnames)s>$',
# should fail:
'lastname',
'$<lastname',
'$<lastname::',
'$<lastname::>$',
'$<lastname::abc>$',
'$<lastname::abc::>$',
'$<lastname::abc::3>$',
'$<lastname::abc::xyz>$',
'$<lastname::::>$',
'$<lastname::::xyz>$',
'$<date_of_birth::%Y-%m-%d>$',
'$<date_of_birth::%Y-%m-%d::3>$',
'$<date_of_birth::%Y-%m-%d::>$',
# should work:
'$<adr_location::home::35>$',
'$<gender_mapper::male//female//other::5>$',
'$<current_meds::==> %(product)s %(preparation)s (%(substance)s) <==\n::50>$',
'$<allergy_list::%(descriptor)s, >$',
'$<current_meds_table::latex//>$'
# 'firstname',
# 'title',
# 'date_of_birth',
# 'progress_notes',
# 'soap',
# 'soap_s',
# 'soap_o',
# 'soap_a',
# 'soap_p',
# 'soap',
# 'progress_notes',
# 'date_of_birth'
]
# tests = [
# '$<latest_vaccs_table::latex>$'
# ]
pat = gmPersonSearch.ask_for_patient()
if pat is None:
return
gmPatSearchWidgets.set_active_patient(patient = pat)
handler = gmPlaceholderHandler()
handler.debug = True
for placeholder in tests:
print(placeholder, "=>", handler[placeholder])
print("--------------")
input()
# print 'DOB (YYYY-MM-DD):', handler['date_of_birth::%Y-%m-%d']
# app = wx.PyWidgetTester(size = (200, 50))
# ph = 'progress_notes::ap'
# print '%s: %s' % (ph, handler[ph])
#--------------------------------------------------------
def test_scripting():
from Gnumed.pycommon import gmScriptingListener
import xmlrpc.client
listener = gmScriptingListener.cScriptingListener(macro_executor = cMacroPrimitives(personality='unit test'), port=9999)
s = xmlrpc.client.ServerProxy('http://localhost:9999')
print("should fail:", s.attach())
print("should fail:", s.attach('wrong cookie'))
print("should work:", s.version())
print("should fail:", s.raise_gnumed())
print("should fail:", s.raise_notebook_plugin('test plugin'))
print("should fail:", s.lock_into_patient('kirk, james'))
print("should fail:", s.unlock_patient())
status, conn_auth = s.attach('unit test')
print("should work:", status, conn_auth)
print("should work:", s.version())
print("should work:", s.raise_gnumed(conn_auth))
status, pat_auth = s.lock_into_patient(conn_auth, 'kirk, james')
print("should work:", status, pat_auth)
print("should fail:", s.unlock_patient(conn_auth, 'bogus patient unlock cookie'))
print("should work", s.unlock_patient(conn_auth, pat_auth))
data = {'firstname': 'jame', 'lastnames': 'Kirk', 'gender': 'm'}
status, pat_auth = s.lock_into_patient(conn_auth, data)
print("should work:", status, pat_auth)
print("should work", s.unlock_patient(conn_auth, pat_auth))
print(s.detach('bogus detach cookie'))
print(s.detach(conn_auth))
del s
listener.shutdown()
#--------------------------------------------------------
def test_placeholder_regex():
import re as regex
tests = [
' $<lastname>$ ',
' $<lastname::::3>$ ',
# should fail:
'$<date_of_birth::%Y-%m-%d>$',
'$<date_of_birth::%Y-%m-%d::3>$',
'$<date_of_birth::%Y-%m-%d::>$',
'$<adr_location::home::35>$',
'$<gender_mapper::male//female//other::5>$',
'$<current_meds::==> %(product)s %(preparation)s (%(substance)s) <==\\n::50>$',
'$<allergy_list::%(descriptor)s, >$',
'\\noindent Patient: $<lastname>$, $<firstname>$',
'$<allergies::%(descriptor)s & %(l10n_type)s & {\\footnotesize %(reaction)s} \tabularnewline \hline >$',
'$<current_meds:: \item[%(substance)s] {\\footnotesize (%(product)s)} %(preparation)s %(amount)s%(unit)s: %(schedule)s >$'
]
tests = [
'junk $<lastname::::3>$ junk',
'junk $<lastname::abc::3>$ junk',
'junk $<lastname::abc>$ junk',
'junk $<lastname>$ junk',
'junk $<lastname>$ junk $<firstname>$ junk',
'junk $<lastname::abc>$ junk $<fiststname::abc>$ junk',
'junk $<lastname::abc::3>$ junk $<firstname::abc::3>$ junk',
'junk $<lastname::::3>$ junk $<firstname::::3>$ junk'
]
tests = [
# u'junk $<<<date_of_birth::%Y %B %d $<inner placeholder::%Y %B %d::20>$::20>>>$ junk',
# u'junk $<date_of_birth::%Y %B %d::20>$ $<date_of_birth::%Y %B %d::20>$',
# u'junk $<date_of_birth::%Y %B %d::>$ $<date_of_birth::%Y %B %d::20>$ $<<date_of_birth::%Y %B %d::20>>$',
# u'junk $<date_of_birth::::20>$',
# u'junk $<date_of_birth::::>$',
'junk $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::>>>$ junk',
'junk $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::250>>>$ junk',
'junk $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::3-4>>>$ junk',
'should fail $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::->>>$ junk',
'should fail $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::3->>>$ junk',
'should fail $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::-4>>>$ should fail',
'should fail $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::should_fail>>>$ junk',
'should fail $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::should_fail->>>$ junk',
'should fail $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::-should_fail>>>$ junk',
'should fail $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::should_fail-4>>>$ junk',
'should fail $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::3-should_fail>>>$ junk',
'should fail $<<<current_meds::%(product)s (%(substance)s): Dispense $<free_text::Dispense how many of %(product)s %(preparation)s (%(substance)s) ?::20>$ (%(preparation)s) \\n::should_fail-should_fail>>>$ junk',
]
tests = [
'junk $<<<should pass::template::>>>$ junk',
'junk $<<<should pass::template::10>>>$ junk',
'junk $<<<should pass::template::10-20>>>$ junk',
'junk $<<<should pass::template $<<dummy::template 2::10>>$::>>>$ junk',
'junk $<<<should pass::template $<dummy::template 2::10>$::>>>$ junk',
'junk $<<<should pass::template::>>>$ junk $<<<should pass 2::template 2::>>>$ junk',
'junk $<<<should pass::template::>>>$ junk $<<should pass 2::template 2::>>$ junk',
'junk $<<<should pass::template::>>>$ junk $<should pass 2::template 2::>$ junk',
'junk $<<<should fail::template $<<<dummy::template 2::10>>>$::>>>$ junk',
'junk $<<<should fail::template::10->>>$ junk',
'junk $<<<should fail::template::10->>>$ junk',
'junk $<<<should fail::template::10->>>$ junk',
'junk $<<<should fail::template::10->>>$ junk',
'junk $<first_pass::junk $<<<3rd_pass::template::20>>>$ junk::8-10>$ junk'
]
#print "testing placeholder regex:", first_pass_placeholder_regex
##print "testing placeholder regex:", second_pass_placeholder_regex
##print "testing placeholder regex:", third_pass_placeholder_regex
#print ""
#for t in tests:
# print 'line: "%s"' % t
# phs = regex.findall(first_pass_placeholder_regex, t, regex.IGNORECASE)
# #phs = regex.findall(second_pass_placeholder_regex, t, regex.IGNORECASE)
# #phs = regex.findall(third_pass_placeholder_regex, t, regex.IGNORECASE)
# print " %s placeholders:" % len(phs)
# for p in phs:
# print ' => ', p
# print " "
all_tests = {
first_pass_placeholder_regex: [
# different lengths/regions
('junk $<first_level::template::>$ junk', ['$<first_level::template::>$']),
('junk $<first_level::template::10>$ junk', ['$<first_level::template::10>$']),
('junk $<first_level::template::10-12>$ junk', ['$<first_level::template::10-12>$']),
# inside is other-level:
('junk $<first_level::$<<insert::insert_template::0>>$::10-12>$ junk', ['$<first_level::$<<insert::insert_template::0>>$::10-12>$']),
('junk $<first_level::$<<<insert::insert_template::0>>>$::10-12>$ junk', ['$<first_level::$<<<insert::insert_template::0>>>$::10-12>$']),
# outside is other-level:
('junk $<<second_level::$<insert::insert_template::0>$::10-12>>$ junk', ['$<insert::insert_template::0>$']),
('junk $<<<third_level::$<insert::insert_template::0>$::10-12>>>$ junk', ['$<insert::insert_template::0>$']),
# other level on same line
('junk $<first_level 1::template 1::>$ junk $<<second_level 2::template 2::>>$ junk', ['$<first_level 1::template 1::>$']),
('junk $<first_level 1::template 1::>$ junk $<<<third_level 2::template 2::>>>$ junk', ['$<first_level 1::template 1::>$']),
# this should produce 2 matches
('junk $<first_level 1::template 1::>$ junk $<first_level 2::template 2::>$ junk', ['$<first_level 1::template 1::>$', '$<first_level 2::template 2::>$']),
# this will produce a mismatch, due to illegal nesting of same-level placeholders
('returns illegal match: junk $<first_level::$<insert::insert_template::0>$::10-12>$ junk', ['$<first_level::$<insert::insert_template::0>$::10-12>$']),
],
second_pass_placeholder_regex: [
# different lengths/regions
('junk $<<second_level::template::>>$ junk', ['$<<second_level::template::>>$']),
('junk $<<second_level::template::10>>$ junk', ['$<<second_level::template::10>>$']),
('junk $<<second_level::template::10-12>>$ junk', ['$<<second_level::template::10-12>>$']),
# inside is other-level:
('junk $<<second_level::$<insert::insert_template::0>$::10-12>>$ junk', ['$<<second_level::$<insert::insert_template::0>$::10-12>>$']),
('junk $<<second_level::$<<<insert::insert_template::0>>>$::10-12>>$ junk', ['$<<second_level::$<<<insert::insert_template::0>>>$::10-12>>$']),
# outside is other-level:
('junk $<first_level::$<<insert::insert_template::0>>$::10-12>$ junk', ['$<<insert::insert_template::0>>$']),
('junk $<<<third_level::$<<insert::insert_template::0>>$::10-12>>>$ junk', ['$<<insert::insert_template::0>>$']),
# other level on same line
('junk $<first_level 1::template 1::>$ junk $<<second_level 2::template 2::>>$ junk', ['$<<second_level 2::template 2::>>$']),
('junk $<<second_level 1::template 1::>>$ junk $<<<third_level 2::template 2::>>>$ junk', ['$<<second_level 1::template 1::>>$']),
# this should produce 2 matches
('junk $<<second_level 1::template 1::>>$ junk $<<second_level 2::template 2::>>$ junk', ['$<<second_level 1::template 1::>>$', '$<<second_level 2::template 2::>>$']),
# this will produce a mismatch, due to illegal nesting of same-level placeholders
('returns illegal match: junk $<<second_level::$<<insert::insert_template::0>>$::10-12>>$ junk', ['$<<second_level::$<<insert::insert_template::0>>$::10-12>>$']),
],
third_pass_placeholder_regex: [
# different lengths/regions
('junk $<<<third_level::template::>>>$ junk', ['$<<<third_level::template::>>>$']),
('junk $<<<third_level::template::10>>>$ junk', ['$<<<third_level::template::10>>>$']),
('junk $<<<third_level::template::10-12>>>$ junk', ['$<<<third_level::template::10-12>>>$']),
# inside is other-level:
('junk $<<<third_level::$<<insert::insert_template::0>>$::10-12>>>$ junk', ['$<<<third_level::$<<insert::insert_template::0>>$::10-12>>>$']),
('junk $<<<third_level::$<insert::insert_template::0>$::10-12>>>$ junk', ['$<<<third_level::$<insert::insert_template::0>$::10-12>>>$']),
# outside is other-level:
('junk $<<second_level::$<<<insert::insert_template::0>>>$::10-12>>$ junk', ['$<<<insert::insert_template::0>>>$']),
('junk $<first_level::$<<<insert::insert_template::0>>>$::10-12>$ junk', ['$<<<insert::insert_template::0>>>$']),
# other level on same line
('junk $<first_level 1::template 1::>$ junk $<<<third_level 2::template 2::>>>$ junk', ['$<<<third_level 2::template 2::>>>$']),
('junk $<<second_level 1::template 1::>>$ junk $<<<third_level 2::template 2::>>>$ junk', ['$<<<third_level 2::template 2::>>>$']),
# this will produce a mismatch, due to illegal nesting of same-level placeholders
('returns illegal match: junk $<<<third_level::$<<<insert::insert_template::0>>>$::10-12>>>$ junk', ['$<<<third_level::$<<<insert::insert_template::0>>>$::10-12>>>$']),
]
}
for pattern in [first_pass_placeholder_regex, second_pass_placeholder_regex, third_pass_placeholder_regex]:
print("")
print("-----------------------------")
print("regex:", pattern)
tests = all_tests[pattern]
for t in tests:
line, expected_results = t
phs = regex.findall(pattern, line, regex.IGNORECASE)
if len(phs) > 0:
if phs == expected_results:
continue
print("")
print("failed")
print("line:", line)
if len(phs) == 0:
print("no match")
continue
if len(phs) > 1:
print("several matches")
for r in expected_results:
print("expected:", r)
for p in phs:
print("found:", p)
continue
print("unexpected match")
print("expected:", expected_results)
print("found: ", phs)
#--------------------------------------------------------
def test_placeholder():
phs = [
#u'emr_journal::soapu //%(clin_when)s %(modified_by)s %(soap_cat)s %(narrative)s//1000 days::',
#u'free_text::placeholder test//preset::9999',
#u'soap_for_encounters:://::9999',
#u'soap_p',
#u'encounter_list::%(started)s: %(assessment_of_encounter)s::30',
#u'patient_comm::homephone::1234',
#u'$<patient_address::work::1234>$',
#u'adr_region::home::1234',
#u'adr_country::fehlt::1234',
#u'adr_subunit::fehlt::1234',
#u'adr_suburb::fehlt-auch::1234',
#u'external_id::Starfleet Serial Number//Star Fleet Central Staff Office::1234',
#u'primary_praxis_provider',
#u'current_provider::::3-5',
#u'current_provider_external_id::Starfleet Serial Number//Star Fleet Central Staff Office::1234',
#u'current_provider_external_id::LANR//LÄK::1234'
#u'$<current_provider_external_id::KV-LANR//KV::1234>$'
#u'primary_praxis_provider_external_id::LANR//LÄK::1234'
#u'form_name_long::::1234',
#u'form_name_long::::5',
#u'form_name_long::::',
#u'form_version::::5',
#u'$<current_meds::\item %(product)s %(preparation)s (%(substance)s) from %(started)s for %(duration)s as %(schedule)s until %(discontinued)s\\n::250>$',
#u'$<vaccination_history::%(date_given)s: %(vaccine)s [%(batch_no)s] %(l10n_indications)s::250>$',
#u'$<date_of_birth::%Y %B %d::20>$',
#u'$<date_of_birth::%Y %B %d::>$',
#u'$<date_of_birth::::20>$',
#u'$<date_of_birth::::>$',
#u'$<patient_tags::Tag "%(l10n_description)s": %(comment)s//\\n- ::250>$',
#u'$<PHX::%(description)s\n side: %(laterality)s, active: %(is_active)s, relevant: %(clinically_relevant)s, caused death: %(is_cause_of_death)s//\n//%Y %B %d//latex::250>$',
#u'$<patient_photo::\includegraphics[width=60mm]{%s}//image/png//.png::250>$',
#u'$<data_snippet::binary_test_snippet//path=<%s>//image/png//.png::250>$',
#u'$<data_snippet::autograph-LMcC//path=<%s>//image/jpg//.jpg::250>$',
#u'$<current_meds::%s ($<lastname::::50>$)//select::>$',
#u'$<current_meds::%s//select::>$',
#u'$<soap_by_issue::soapu //%Y %b %d//%(narrative)s::1000>$',
#u'$<soap_by_episode::soapu //%Y %b %d//%(narrative)s::1000>$',
#u'$<documents::select//description//document %(clin_when)s: %(l10n_type)s// file: %(fullpath)s (<some path>/%(name)s)//~/gnumed/export/::>$',
#u'$<soap::soapu //%s::9999>$',
#u'$<soap::soapu //%(soap_cat)s: %(date)s | %(provider)s | %(narrative)s::9999>$'
#u'$<test_results:://%c::>$'
#u'$<test_results::%(unified_abbrev)s: %(unified_val)s %(val_unit)s//%c::>$'
'$<most_recent_test_results::tmpl=%(unified_name)s & %(unified_val)s%(val_unit)s & [%(unified_target_min)s--%(unified_target_max)s] %(unified_target_range)s & %(clin_when)s \\tabularnewline::>$' #<dfmt=...>//<tmpl=...>//<sep=...>
#u'$<reminders:://::>$'
#u'$<current_meds_for_rx::%(product)s (%(contains)s): dispense %(amount2dispense)s ::>$'
#u'$<praxis::%(branch)s (%(praxis)s)::>$'
#u'$<praxis_address::::120>$'
#u'$<praxis_id::::120>$'
#u'$<gen_adr_street::Street = %s//Wählen Sie die Empfängeradresse !::120>$', u'$<gen_adr_location::Ort = %s::120>$', u'$<gen_adr_country::::120>$'
#u'$<receiver_name::%s::120>$',
#u'$<receiver_street::%s//a::120>$',
#u'$<receiver_number:: %s//a::120>$',
#u'$<receiver_subunit:: %s::120>$',
#u'$<receiver_postcode::%s//b::120>$',
#u'$<receiver_location:: %s::120>$',
#u'$<receiver_country::, %s::120>$',
#u'$<external_care::%(issue)s: %(provider)s of %(unit)s@%(organization)s (%(comment)s)::1024>$',
#u'$<url_escape::hello world ü::>$',
#u'$<substance_abuse::%(substance)s (%(harmful_use_type)s) last=%(last_checked_when)s stop=%(discontinued)s // %(notes)s::>$',
#u'bill_adr_region::region %s::1234',
#u'bill_adr_country::%s::1234',
#u'bill_adr_subunit::subunit: %s::1234',
#u'bill_adr_suburb::-> %s::1234',
#u'bill_adr_street::::1234',
#u'bill_adr_number::%s::1234',
#u'$<diagnoses::\listitem %s::>$'
#u'$<patient_mcf::fmt=txt//card=%s::>$',
#u'$<patient_mcf::fmt=mcf//mcf=%s::>$',
#u'$<patient_mcf::fmt=qr//png=%s::>$'
#u'$<praxis_scan2pay::fmt=txt::>$',
#u'$<praxis_scan2pay::fmt=qr::>$'
#u'$<bill_scan2pay::fmt=txt::>$',
#u'$<bill_scan2pay::fmt=qr::>$'
]
handler = gmPlaceholderHandler()
handler.debug = True
gmStaff.set_current_provider_to_logged_on_user()
gmPraxisWidgets.set_active_praxis_branch(no_parent = True)
pat = gmPersonSearch.ask_for_patient()
if pat is None:
return
gmPatSearchWidgets.set_active_patient(patient = pat)
#app = wx.PyWidgetTester(size = (200, 50))
#handler.set_placeholder('form_name_long', 'ein Testformular')
for ph in phs:
print(ph)
print(" result:")
print(' %s' % handler[ph])
#handler.unset_placeholder('form_name_long')
#--------------------------------------------------------
def test():
pat = gmPersonSearch.ask_for_patient()
if pat is None:
sys.exit()
gmPerson.set_active_patient(patient = pat)
from Gnumed.wxpython import gmMedicationWidgets
gmMedicationWidgets.manage_substance_intakes()
#--------------------------------------------------------
def test_show_phs():
show_placeholders()
#--------------------------------------------------------
def test_parse_ph_options():
handler = gmPlaceholderHandler()
option_str = '//select//pos1//opt1=one//opt2=2//opt3=drei//positional_further_down//fmt=qr//%s//tmpl=__%s__//switch=with=equal_sig'
switches = {'select': False, 'verbose': False, 'switch=with=equal_sign': None}
kwds = {'opt1': 1, 'opt2': 'two', 'opt4': 'vier', 'fmt': 'qr', 'tmpl': '--%s--', 'switch': 'what ??'}
pos = {'empty': None, 'firstpos': 'egal', 'farther_away': None, 'tmpl':None, 'one too many': 99999}
opts = handler._parse_ph_options_new (
options_data = option_str
#, switch_defaults = switches
#, kwd_defaults = kwds
#, pos_defaults= None
)
print(option_str)
print('no definitions:')
for key in opts:
print(' ', key, '-->', opts[key])
input()
opts = handler._parse_ph_options_new (
options_data = option_str
, switch_defaults = switches
#, kwd_defaults = kwds
#, pos_defaults= None
)
print()
print(option_str)
print('switches defined:')
for key in opts:
print(' ', key, '-->', opts[key])
input()
opts = handler._parse_ph_options_new (
options_data = option_str
, switch_defaults = switches
, kwd_defaults = kwds
#, pos_defaults= None
)
print()
print(option_str)
print('switches and kwds defined:')
for key in opts:
print(' ', key, '-->', opts[key])
input()
opts = handler._parse_ph_options_new (
options_data = option_str
, switch_defaults = switches
, kwd_defaults = kwds
, pos_defaults = pos
)
print()
print(option_str)
print('switches and kwds and positionals defined:')
for key in opts:
print(' ', key, '-->', opts[key])
input()
opts = handler._parse_ph_options_new (
options_data = option_str
#, switch_defaults = switches
, kwd_defaults = kwds
#, pos_defaults= None
)
print()
print(option_str)
print('kwds defined:')
for key in opts:
print(' ', key, '-->', opts[key])
# one, two, four, legacy = handler._parse_ph_options (
# option_defs = {'__legacy_options__': None, 'opt1': 1, 'opt2': 'two', 'opt4': 'vier'},
# options_string = 'pos1//opt1=one//opt2=2//opt3=drei//legacy_lives_forever',
# ignore_positional_options = False
# )
# print(one, two, four, legacy)
#--------------------------------------------------------
test_parse_ph_options()
#sys.exit()
#app = wx.App()
#test_placeholders()
#test_new_variant_placeholders()
#test_scripting()
#test_placeholder_regex()
#test()
#test_placeholder()
#test_show_phs()
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