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"""Automatic GNUmed notification trigger generation.
This module creates notification triggers on tables.
Theory of operation:
Any table that should send notifies must be recorded in
the table "gm.notifying_tables".
Any table inheriting from clin.clin_root_item is added
automatically and the signal narrative_mod_db is sent
from it.
"""
#==================================================================
# $Source: /home/ncq/Projekte/cvs2git/vcs-mirror/gnumed/gnumed/server/bootstrap/gmNotificationSchemaGenerator.py,v $
__version__ = "$Revision: 1.40 $"
__author__ = "Karsten.Hilbert@gmx.net"
__license__ = "GPL v2 or later (details at http://www.gnu.org)"
import sys, os.path, string, logging
if __name__ == '__main__':
sys.path.insert(0, '../../')
from Gnumed.pycommon import gmPG2
_log = logging.getLogger('gm.bootstrapper')
_log.info(__version__)
#==================================================================
# SQL statements for notification triggers
#------------------------------------------------------------------
# this map defines how table columns can be used in SQL to
# access the identity PK related to a row in that table
col2identity_accessor = {
'fk_encounter': u"""-- retrieve identity PK via fk_encounter
if TG_OP = ''DELETE'' then
select into _pk_identity fk_patient from clin.encounter where pk = OLD.fk_encounter limit 1;
else
select into _pk_identity fk_patient from clin.encounter where pk = NEW.fk_encounter limit 1;
end if;""",
'fk_identity': u"""-- retrieve identity PK via fk_identity
if TG_OP = ''DELETE'' then
_pk_identity := OLD.fk_identity;
else
_pk_identity := NEW.fk_identity;
end if;""",
'fk_patient': u"""-- retrieve identity PK via fk_patient
if TG_OP = ''DELETE'' then
_pk_identity := OLD.fk_patient;
else
_pk_identity := NEW.fk_patient;
end if;""",
'id_identity': u"""-- retrieve identity PK via id_identity
if TG_OP = ''DELETE'' then
_pk_identity := OLD.id_identity;
else
_pk_identity := NEW.id_identity;
end if;"""
}
trigger_ddl_without_pk = """
-- ----------------------------------------------
\unset ON_ERROR_STOP
drop function %(schema)s.trf_announce_%(sig)s_mod() cascade;
drop function %(schema)s.trf_announce_%(sig)s_mod_no_pk() cascade;
drop trigger tr_%(sig)s_mod on %(schema)s.%(tbl)s cascade;
\set ON_ERROR_STOP 1
create function %(schema)s.trf_announce_%(sig)s_mod_no_pk() returns trigger as '
begin
execute ''notify "%(sig)s_mod_db:"'';
return NULL;
end;
' language 'plpgsql';
create constraint trigger tr_%(sig)s_mod
after insert or delete or update
on %(schema)s.%(tbl)s
deferrable
for each row
execute procedure %(schema)s.trf_announce_%(sig)s_mod_no_pk();
-- tell backend listener to NOT listen for patient-specific signals on this table
update
gm.notifying_tables
set
carries_identity_pk = False
where
schema_name = '%(schema)s'
and table_name = '%(tbl)s'
and signal = '%(sig)s';
"""
trigger_ddl_with_pk = """
-- ----------------------------------------------
\unset ON_ERROR_STOP
drop function %(schema)s.trf_announce_%(sig)s_mod() cascade;
drop trigger tr_%(sig)s_mod on %(schema)s.%(tbl)s cascade;
\set ON_ERROR_STOP 1
create function %(schema)s.trf_announce_%(sig)s_mod() returns trigger as '
declare
_pk_identity integer;
begin
_pk_identity := NULL;
%(identity_accessor)s
-- soft error out if not found
if _pk_identity is NULL then
raise notice ''%(schema)s.trf_announce_%(sig)s_mod(): cannot determine identity PK on table <%(schema)s.%(tbl)s>'';
return NULL;
end if;
-- now, execute() the NOTIFY
execute ''notify "%(sig)s_mod_db:'' || _pk_identity || ''"'';
return NULL;
end;
' language 'plpgsql';
create constraint trigger tr_%(sig)s_mod
after insert or delete or update
on %(schema)s.%(tbl)s
deferrable
for each row
execute procedure %(schema)s.trf_announce_%(sig)s_mod();
-- tell backend listener to listen for patient-specific signals on this table
update
gm.notifying_tables
set
carries_identity_pk = True
where
schema_name = '%(schema)s'
and table_name = '%(tbl)s'
and signal = '%(sig)s';
"""
func_narrative_mod_announce = """
-- ----------------------------------------------
-- narrative modfication announcement triggers
-- on clin.clin_root_item child tables
-- ----------------------------------------------
\unset ON_ERROR_STOP
drop function clin.trf_announce_narrative_mod() cascade;
\set ON_ERROR_STOP 1
create function clin.trf_announce_narrative_mod()
returns trigger
language 'plpgsql'
as '
declare
_pk_identity integer;
begin
_pk_identity := NULL;
-- retrieve identity PK via fk_encounter
if TG_OP = ''DELETE'' then
select into _pk_identity fk_patient from clin.encounter where pk = OLD.fk_encounter limit 1;
else
select into _pk_identity fk_patient from clin.encounter where pk = NEW.fk_encounter limit 1;
end if;
-- soft error out if not found
if _pk_identity is NULL then
raise notice ''clin.trf_announce_narrative_mod(): cannot determine identity PK on clin.clin_root_item child table'';
return NULL;
end if;
-- now, execute() the NOTIFY
execute ''notify "narrative_mod_db:'' || _pk_identity || ''"'';
return NULL;
end;
';
-- tell backend listener to listen for patient-specific signals on this table
-- it does in fact not matter which table this is about,
-- it suffices to record the signal at all
delete from gm.notifying_tables where
schema_name = 'any schema'
and signal = 'narrative';
insert into gm.notifying_tables (
schema_name, table_name, signal, carries_identity_pk
) values (
'any schema',
'clin.clin_root_item children',
'narrative',
True
);
-- ----------------------------------------------
-- sanity check trigger on
-- clin.clin_root_item child tables
-- ----------------------------------------------
\unset ON_ERROR_STOP
drop function clin.trf_sanity_check_enc_epi_insert() cascade;
\set ON_ERROR_STOP 1
create function clin.trf_sanity_check_enc_epi_insert()
returns trigger
language 'plpgsql'
as '
declare
_identity_from_encounter integer;
_identity_from_episode integer;
begin
-- sometimes .fk_episode can actually be NULL (eg. clin.substance_intake)
-- in which case we do not need to run the sanity check
if NEW.fk_episode is NULL then
return NEW;
end if;
select fk_patient into _identity_from_encounter from clin.encounter where pk = NEW.fk_encounter;
select fk_patient into _identity_from_episode from clin.encounter where pk = (
select fk_encounter from clin.episode where pk = NEW.fk_episode
);
if _identity_from_encounter <> _identity_from_episode then
raise exception ''INSERT into %.%: Sanity check failed. Encounter % patient = %. Episode % patient = %.'',
TG_TABLE_SCHEMA,
TG_TABLE_NAME,
NEW.fk_encounter,
_identity_from_encounter,
NEW.fk_episode,
_identity_from_episode
;
return NULL;
end if;
return NEW;
end;
';
"""
trigger_narrative_mod_announce = """
\unset ON_ERROR_STOP
drop trigger tr_narrative_mod on %(schema)s.%(tbl)s cascade;
\set ON_ERROR_STOP 1
-- %(schema)s.%(tbl)s
create constraint trigger tr_narrative_mod
after insert or delete or update
on %(schema)s.%(tbl)s
deferrable
for each row
execute procedure clin.trf_announce_narrative_mod();
\unset ON_ERROR_STOP
drop trigger tr_sanity_check_enc_epi_insert on %(schema)s.%(tbl)s cascade;
\set ON_ERROR_STOP 1
-- %(schema)s.%(tbl)s
create trigger tr_sanity_check_enc_epi_insert
before insert
on %(schema)s.%(tbl)s
for each row
execute procedure clin.trf_sanity_check_enc_epi_insert();
"""
dem_identity_accessor = u"""-- retrieve identity PK via pk
if TG_OP = ''DELETE'' then
_pk_identity := OLD.pk;
else
_pk_identity := NEW.pk;
end if;"""
trigger_identity_mod_announce = """
\unset ON_ERROR_STOP
drop function dem.trf_identity_mod() cascade;
drop function dem.trf_identity_mod_no_pk() cascade;
\set ON_ERROR_STOP 1
%s
""" % (trigger_ddl_with_pk % {
'schema': 'dem',
'tbl': 'identity',
'sig': 'identity',
'identity_accessor': dem_identity_accessor
}
)
#------------------------------------------------------------------
def create_narrative_notification_schema(cursor):
rows = gmPG2.get_child_tables (
schema = u'clin',
table = u'clin_root_item',
link_obj = cursor
)
_log.info('child tables of clin.clin_root_item:')
_log.info(', '.join([ u'%s.%s' % (r[0], r[1]) for r in rows ]))
ddl = [func_narrative_mod_announce]
for row in rows:
ddl.append(trigger_narrative_mod_announce % {'schema': row[0], 'tbl': row[1]})
ddl.append('-- ----------------------------------------------')
return ddl
#------------------------------------------------------------------
def create_notification_schema(cursor):
cmd = u"""
select
schema_name, table_name, signal
from
gm.notifying_tables
where
schema_name != 'any schema'
and
schema_name != 'any'
"""
rows, idx = gmPG2.run_ro_queries(link_obj = cursor, queries = [{'cmd': cmd}])
if len(rows) == 0:
_log.info('no notifying tables')
return None
_log.info('known identity accessor columns: %s' % col2identity_accessor.keys())
# for each notifying table
schema = []
for notifying_def in rows:
_log.info('creating notification DDL for: %s' % notifying_def)
# does table have a known patient-related column ?
identity_access_col = None
for key in col2identity_accessor.keys():
cmd = u"""select exists (
select 1 from information_schema.columns where
table_schema = %(schema)s and
table_name = %(tbl)s and
column_name = %(col)s
)"""
args = {
'schema': notifying_def['schema_name'],
'tbl': notifying_def['table_name'],
'col': key
}
rows, idx = gmPG2.run_ro_queries(link_obj = cursor, queries = [{'cmd': cmd, 'args': args}])
if rows[0][0] is True:
identity_access_col = key
break
if identity_access_col is not None:
_log.info('identity accessor on table [%s.%s] is column [%s]' % (
notifying_def['schema_name'],
notifying_def['table_name'],
identity_access_col
))
schema.append(trigger_ddl_with_pk % {
'schema': notifying_def['schema_name'],
'tbl': notifying_def['table_name'],
'sig': notifying_def['signal'],
'identity_accessor': col2identity_accessor[identity_access_col]
})
else:
_log.info('no known identity accessor found on table [%s.%s]' % (
notifying_def['schema_name'],
notifying_def['table_name']
))
if '%s.%s' % (notifying_def['schema_name'], notifying_def['table_name']) == 'dem.identity':
_log.info('skipping dem.identity')
continue
schema.append(trigger_ddl_without_pk % {
'schema': notifying_def['schema_name'],
'tbl': notifying_def['table_name'],
'sig': notifying_def['signal']
})
# explicitly append dem.identity
schema.append(trigger_identity_mod_announce)
# explicitly append clin.waiting_list
# it does have an identity accessor but we want a generic non-patient signal, too
schema.append(trigger_ddl_without_pk % {
'schema': 'clin',
'tbl': 'waiting_list',
'sig': 'waiting_list_generic'
})
# explicitly append dem.message_inbox with generic non-patient signal
# it does have an identity accessor but we want a generic non-patient signal, too
# this only works starting with v12
schema.append(trigger_ddl_without_pk % {
'schema': 'dem',
'tbl': 'message_inbox',
'sig': 'message_inbox_generic'
})
schema.append('-- ----------------------------------------------')
return schema
#==================================================================
# main
#------------------------------------------------------------------
if __name__ == "__main__" :
logging.getLogger().setLevel(logging.DEBUG)
conn = gmPG2.get_connection(readonly=True, pooled=False)
curs = conn.cursor()
schema = create_notification_schema(curs)
schema.extend(create_narrative_notification_schema(curs))
curs.close()
conn.close()
if schema is None:
print "error creating schema"
sys.exit(-1)
file = open('notification-schema.sql', 'wb')
for line in schema:
file.write("%s\n" % line)
file.close()
#==================================================================
# $Log: gmNotificationSchemaGenerator.py,v $
# Revision 1.40 2009-12-21 15:14:27 ncq
# - fix typo
#
# Revision 1.39 2009/10/29 17:24:29 ncq
# - consider case of when .fk_episode can actually be NULL in enc/epi sanity check
#
# Revision 1.38 2009/10/27 11:00:20 ncq
# - better comments
#
# Revision 1.37 2009/08/24 20:11:27 ncq
# - bump db version
# - fix tag creation
# - provider inbox:
# enable filter-to-active-patient,
# listen to new signal,
# use cInboxMessage class
# - properly constrain LOINC phrasewheel SQL
# - include v12 scripts in release
# - install arriba jar to /usr/local/bin/
# - check for table existence in audit schema generator
# - include dem.message inbox with additional generic signals
#
# Revision 1.36 2009/04/03 09:55:46 ncq
# - generate trigger to sanity check encounter.fk_patient vs
# episode.fk_patient on insert on any clin.clin_root_item child
#
# Revision 1.35 2009/02/24 10:04:14 ncq
# - fix DROP TRIGGER SQL
#
# Revision 1.34 2009/02/24 09:49:18 ncq
# - DROPping TRIGGERs cannot CASCADE
#
# Revision 1.33 2009/02/23 08:47:22 ncq
# - more careful deletion of triggers
#
# Revision 1.32 2009/01/17 23:13:18 ncq
# - better name for non-identity announcers
# - explicitely disable identity listening for non-identity tables
# - improve dem.identity support
# - add explicit generic waiting list support
#
# Revision 1.31 2009/01/08 16:43:58 ncq
# - no more fk_identity in blobs.doc_med so remove identity accessor mapping
#
# Revision 1.30 2008/07/10 08:36:27 ncq
# - protect against old mischief, too
#
# Revision 1.29 2008/07/10 08:19:30 ncq
# - protect standard notification generation against existence of
# dummy entry for narrative notification used for telling client
# backend listener what to listen for (that is, don't fail notification
# generation on "any schema"."clin.clin_root_item children")
#
# Revision 1.28 2008/04/11 12:30:22 ncq
# - create notification schema for clin.clin_root_item children
#
# Revision 1.27 2008/01/07 14:15:43 ncq
# - port to gmCfg2/gmLog2
# - create database with default transaction mode set to readonly
#
# Revision 1.26 2007/11/28 22:38:10 ncq
# - make it know about dem.identity
#
# Revision 1.25 2007/11/28 14:01:07 ncq
# - fix ,
#
# Revision 1.24 2007/11/28 11:57:01 ncq
# - support id_identity as person pk accessor
#
# Revision 1.23 2007/11/05 12:11:16 ncq
# - do not FAIL on not being able to find the pk_identity for
# notification, it's likely due to a framing transaction
# deleting our parent record
#
# Revision 1.22 2007/11/04 22:59:17 ncq
# - remove completed TODO item
#
# Revision 1.21 2007/10/30 12:53:07 ncq
# - if a table attaches the patient pk document that fact for the backend listener
#
# Revision 1.20 2007/10/30 08:30:17 ncq
# - greatly smarten up notification trigger generation
# - now determine identity column at bootstrap time
# rather than trigger runtime
# - autodetect patient related tables
#
# Revision 1.19 2007/10/25 12:28:30 ncq
# - need to PERFORM, not SELECT when throwing away results
# - proper quoting
#
# Revision 1.18 2007/10/23 21:32:54 ncq
# - fix test suite
# - improve generated triggers
#
# Revision 1.17 2006/12/18 17:38:19 ncq
# - u''ify 2 queries
#
# Revision 1.16 2006/12/06 16:11:25 ncq
# - port to gmPG2
#
# Revision 1.15 2006/11/14 23:29:01 ncq
# - explicitely drop notifiation functions so we can change
# return type from opaque to trigger
#
# Revision 1.14 2005/12/04 09:34:44 ncq
# - make fit for schema support
# - move some queries to gmPG
# - improve DDL templates (use or replace on functions)
#
# Revision 1.13 2005/09/13 11:51:42 ncq
# - properly drop trigger functions so update works
#
# Revision 1.12 2005/06/01 23:19:38 ncq
# - make notification triggers deferrable - useful for special
# situations such as when loading a patient SQL dump
#
# Revision 1.11 2005/03/14 14:39:49 ncq
# - id_patient -> pk_patient
#
# Revision 1.10 2004/11/24 15:38:07 ncq
# - improve generated change triggers
#
# Revision 1.9 2004/09/17 20:57:12 ncq
# - use lowercase since things will be lowercase anyways
#
# Revision 1.8 2004/07/17 21:23:49 ncq
# - run_query now has verbosity argument, so use it
#
# Revision 1.7 2004/06/28 13:31:17 ncq
# - really fix imports, now works again
#
# Revision 1.6 2004/06/28 13:23:20 ncq
# - fix import statements
#
# Revision 1.5 2004/06/26 07:33:55 ncq
# - id_episode -> fk/pk_episode
#
# Revision 1.4 2004/04/17 11:54:16 ncq
# - v_patient_episodes -> v_pat_episodes
#
# Revision 1.3 2004/02/25 09:46:36 ncq
# - import from pycommon now, not python-common
#
# Revision 1.2 2003/12/01 22:10:55 ncq
# - typo
#
# Revision 1.1 2003/11/28 10:16:06 ncq
# - initial check-in
#
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