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# GNUmed database system bootstrapping config file
#-------------------------------------------------
# license: GPL v2 or later
# author: Karsten Hilbert@gmx.net
#----------------------------------
[revision control]
file = $Source: /home/ncq/Projekte/cvs2git/vcs-mirror/gnumed/gnumed/server/bootstrap/update_db-v8_v9.conf,v $
version = $Revision: 1.24 $
#----------------------------------
[installation]
interactive = yes
keep temp files = no
description = $description$
This will update an existing GNUmed version 8
database to the version 9 schema. It does not do
any harm to the data contained within.
The existing database is cloned first. The copy is
then modified. The original database remains unchanged.
$description$
bundles = $bundles$
v8-v9-static
v8-v9-dynamic
$bundles$
#----------------------------------
[bundle v8-v9-static]
database alias = gnumed_v9
minimum postgresql version = 8.1
schema base directory = ../sql/v8-v9/static/
schema = $schema$
v9-dem-lnk_identity2comm.sql
v9-clin-test_result-static.sql
v9-clin-lab_request-static.sql
v9-clin-incoming_data_unmatch-static.sql
v9-clin-incoming_data_unmatch-static2.sql
v9-clin-coded_phrase.sql
v9-clin-episode-static.sql
v9-clin-health_issue-static.sql
v9-clin-keyword_expansion-static.sql
v9-ref-static.sql
v9-ref-coding_system_root-static.sql
v9-ref-loinc-static.sql
$schema$
#----------------------------------
[bundle v8-v9-dynamic]
database alias = gnumed_v9
minimum postgresql version = 8.1
schema base directory = ../sql/v8-v9/dynamic/
schema = $schema$
v9-i18n-dynamic.sql
v9-cfg-report_query.sql
v9-cfg-cfg_str_array.sql
v9-cfg-db_logon_banner.sql
v9-ref-data_source-dynamic.sql
v9-ref-coding_system_root-dynamic.sql
v9-ref-loinc-dynamic.sql
v9-ref-atc-dynamic.sql
v9-ref-v_coded_terms.sql
v9-dem-v_person_comms.sql
v9-clin-allergy-dynamic.sql
v9-clin-coded_item_narrative.sql
v9-clin-coded_phrase.sql
v9-clin-test_result-dynamic.sql
v9-clin-lab_request-dynamic.sql
v9-clin-episode-dynamic.sql
v9-clin-health_issue-dynamic.sql
v9-clin-incoming_data_unmatch-dynamic.sql
v9-clin-v_codes4diag.sql
v9-clin-v_test_results.sql
v9-clin-encounters-dynamic.sql
v9-blobs-delete_document.sql
v9-blobs-doc_type-dynamic.sql
v9-dem-v_provider_inbox.sql
v9-clin-v_emr_journal.sql
v9-clin-keyword_expansion-dynamic.sql
v9-clin-keyword_expansion-data.sql
v9-i18n-translations.sql
$schema$
#----------------------------------
[database gnumed_v9]
name = gnumed_v9
override name by = GM_CORE_DB
drop target database = 1
target version = v9
transfer users = 1
template database = gnumed_v8
template version = v8
server alias = local host
notification disable = 1
audit disable = 0
audit trail parent table = audit.audit_trail
audit trail table prefix = log_
audit fields table = audit.audit_fields
schema base directory = ../sql/v8-v9/
schema = $schema$
$schema$
superuser schema = $superuser schema$
$superuser schema$
upgrade plausibility checks = $upgrade plausibility checks$
identities::::select count(1) from dem.identity
select count(1) from dem.identity
names::::select count(1) from dem.names
select count(1) from dem.names
addresses::::select count(1) from dem.address
select count(1) from dem.address
episodes::::select count(1) from clin.episode
select count(1) from clin.episode
encounters::::select count(1) from clin.encounter
select count(1) from clin.v_pat_encounters where type != 'administrative encounter'
issues::::select count(1) from clin.health_issue
select count(1) from clin.health_issue
documents::::select count(1) from blobs.doc_med
select count(1) from blobs.doc_med
pages::::select count(1) from blobs.doc_obj
select count(1) from blobs.doc_obj
allergies::::select count(1) from clin.allergy
select count(1) from clin.allergy
clinical items::::select count(1) from clin.clin_root_item
select count(1) from clin.clin_root_item
communication channels::::select count(1) from dem.lnk_identity2comm
select count(1) from dem.lnk_identity2comm
test results::::select count(1) from clin.test_result
select count(1) from clin.test_result
unmatched test results::::select count(1) from clin.incoming_data_unmatched
select count(1) from clin.incoming_data_unmatched
unmatchable test results::::select count(1) from clin.incoming_data_unmatchable
select count(1) from clin.incoming_data_unmatchable
$upgrade plausibility checks$
script base directory = ../sql/v8-v9/python/
data import scripts = $data import scripts$
$data import scripts$
#----------------------------------
[server local host]
name =
port = 5432
template database = template1
super user alias = postgres
schema base directory = ../sql/v8-v9/
schema = $schema$
$schema$
#----------------------------------
[user GNUmed owner]
name = gm-dbo
password =
[user postgres]
name = postgres
#password =
#----------------------------------
# these really shouldn't be changed
#----------------------------------
[GnuMed defaults]
database owner alias = GNUmed owner
groups = $groups$
$groups$
#----------------------------------
# $Log: update_db-v8_v9.conf,v $
# Revision 1.24 2009-10-27 22:57:19 dr_agon
# re-enable generation audit objects, because they are required for proper
# bootstrapping of the "dynamic" bundle of next database version
#
# Revision 1.23 2009/10/27 11:01:37 ncq
# - disable audit/notify schema generation
#
# Revision 1.22 2009/05/04 11:47:32 ncq
# - add commented out password option as a hint for Windows
#
# Revision 1.21 2008/08/21 10:22:08 ncq
# - include unmatched changes and two more sanity checks
#
# Revision 1.20 2008/08/17 12:07:38 ncq
# - include translations
#
# Revision 1.19 2008/08/17 10:32:03 ncq
# - add one more plausibility check
#
# Revision 1.18 2008/08/15 16:00:00 ncq
# - include script to fix allergy delete trigger function
#
# Revision 1.17 2008/08/01 10:42:58 ncq
# - add logon banner change
#
# Revision 1.16 2008/07/24 18:23:14 ncq
# - set proper target db version
#
# Revision 1.15 2008/07/15 15:26:32 ncq
# - include keyword data
#
# Revision 1.14 2008/07/10 21:10:00 ncq
# - include keyword expansion tables
#
# Revision 1.13 2008/06/22 17:33:11 ncq
# - include new emr journal script
#
# Revision 1.12 2008/05/29 15:33:04 ncq
# - add script
#
# Revision 1.11 2008/04/11 23:16:12 ncq
# - include encounters script
#
# Revision 1.10 2008/03/29 16:23:59 ncq
# - new scripts
#
# Revision 1.9 2008/03/20 15:32:14 ncq
# - add script
#
# Revision 1.8 2008/03/05 22:36:39 ncq
# - added scripts
#
# Revision 1.7 2008/03/02 11:27:41 ncq
# - include more files
#
# Revision 1.6 2008/02/26 16:28:33 ncq
# - include a bunch of scripts
#
# Revision 1.5 2008/01/27 21:24:14 ncq
# - include more scripts
#
# Revision 1.4 2008/01/11 16:16:40 ncq
# - add more scripts
#
# Revision 1.3 2008/01/07 20:30:02 ncq
# - add static
#
# Revision 1.2 2008/01/07 14:16:29 ncq
# - set target db version to devel
#
# Revision 1.1 2008/01/05 16:31:43 ncq
# - new
#
#
|
