1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412
|
-- ==============================================================
-- GNUmed database schema change script
--
-- License: GPL v2 or later
-- Author: karsten.hilbert@gmx.net
--
-- ==============================================================
\set ON_ERROR_STOP 1
set check_function_bodies to 'on';
--set default_transaction_read_only to off;
-- --------------------------------------------------------------
select audit.add_table_for_audit('ref', 'lnk_substance2brand');
select gm.add_table_for_notifies('ref', 'lnk_substance2brand');
comment on table ref.lnk_substance2brand is
'This table links substances (INNs, mostly) as components into drugs.';
grant select, insert, update, delete on
ref.lnk_substance2brand
to group "gm-doctors";
grant select, select, update on
ref.lnk_substance2brand_pk_seq
to group "gm-doctors";
-- --------------------------------------------------------------
-- .fk_brand
\unset ON_ERROR_STOP
alter table ref.lnk_substance2brand drop constraint lnk_substance2brand_fk_brand_fkey cascade;
\set ON_ERROR_STOP 1
alter table ref.lnk_substance2brand
alter column fk_brand
set not null;
alter table ref.lnk_substance2brand
add foreign key (fk_brand)
references ref.branded_drug(pk)
on update cascade
on delete restrict;
\unset ON_ERROR_STOP
drop index ref.idx_lnk_s2b_fk_brand cascade;
\set ON_ERROR_STOP 1
create index idx_lnk_s2b_fk_brand on ref.lnk_substance2brand(fk_brand);
-- --------------------------------------------------------------
-- .fk_substance
\unset ON_ERROR_STOP
alter table ref.lnk_substance2brand drop constraint lnk_substance2brand_fk_substance_fkey cascade;
\set ON_ERROR_STOP 1
alter table ref.lnk_substance2brand
alter column fk_substance
set not null;
alter table ref.lnk_substance2brand
add foreign key (fk_substance)
references ref.consumable_substance(pk)
on update cascade
on delete restrict;
\unset ON_ERROR_STOP
drop index ref.idx_lnk_s2b_fk_substance cascade;
\set ON_ERROR_STOP 1
create index idx_lnk_s2b_fk_substance on ref.lnk_substance2brand(fk_substance);
-- --------------------------------------------------------------
-- table constraints
\unset ON_ERROR_STOP
alter table ref.lnk_substance2brand drop constraint ref_lnk_s2b_subst_uniq_per_brand cascade;
\set ON_ERROR_STOP 1
alter table ref.lnk_substance2brand
add constraint ref_lnk_s2b_subst_uniq_per_brand
unique(fk_brand, fk_substance);
-- --------------------------------------------------------------
-- must not devoid non-fake brands of all components
\unset ON_ERROR_STOP
drop function ref.trf_true_brands_must_have_components() cascade;
\set ON_ERROR_STOP 1
create or replace function ref.trf_true_brands_must_have_components()
returns trigger
language 'plpgsql'
as '
DECLARE
_brand_is_deleted boolean;
_is_fake_brand boolean;
_has_other_components boolean;
BEGIN
-- if an UPDATE does NOT move the component to another drug
-- there WILL be at least one component left
if TG_OP = ''UPDATE'' then
if NEW.fk_brand = OLD.fk_brand then
return NEW;
end if;
end if;
-- fake drugs may become devoid of components
select
is_fake into _is_fake_brand
from
ref.branded_drug
where
pk = OLD.fk_brand
;
if _is_fake_brand is TRUE then
return OLD;
end if;
-- DELETEs may proceed if the drug has been deleted, too
if TG_OP = ''DELETE'' then
select not exists (
select 1 from ref.branded_drug
where pk = OLD.fk_brand
) into _brand_is_deleted;
if _brand_is_deleted is TRUE then
return OLD;
end if;
end if;
-- if there are other components left after the
-- UPDATE or DELETE everything is fine
select exists (
select 1 from ref.lnk_substance2brand
where
fk_brand = OLD.fk_brand
and
fk_substance != OLD.fk_substance
limit 1
) into _has_other_components;
if _has_other_components is TRUE then
return OLD;
end if;
raise exception ''[ref.trf_true_brands_must_have_components::%] brand must have components (brand <%> component <%>)'', TG_OP, OLD.fk_brand, OLD.fk_substance;
return OLD;
END;';
comment on function ref.trf_true_brands_must_have_components() is
'There must always be at least one component for any existing non-fake branded drug.';
create constraint trigger tr_true_brands_must_have_components
after update or delete
on ref.lnk_substance2brand
deferrable
initially deferred
for each row execute procedure ref.trf_true_brands_must_have_components()
;
-- --------------------------------------------------------------
-- must not modify fk_brand/fk_substance/amount/unit from under a patient
\unset ON_ERROR_STOP
drop function ref.trf_do_not_update_component_if_taken_by_patient() cascade;
\set ON_ERROR_STOP 1
create or replace function ref.trf_do_not_update_component_if_taken_by_patient()
returns trigger
language 'plpgsql'
as '
BEGIN
if OLD.fk_brand = NEW.fk_brand then
if OLD.fk_substance = NEW.fk_substance then
return NEW;
end if;
end if;
perform 1 from clin.substance_intake c_si
where c_si.fk_drug_component = OLD.pk
limit 1;
if NOT FOUND then
return NEW;
end if;
raise exception ''[ref.trf_do_not_update_component_if_taken_by_patient]: as long as drug component <%> is taken by a patient you cannot modify it'', OLD.pk;
return NEW;
END;';
comment on function ref.trf_do_not_update_component_if_taken_by_patient() is
'If this drug component is taken by any patient do not modify it (
amount, unit, substance, brand).';
create trigger tr_do_not_update_component_if_taken_by_patient
before update
on ref.lnk_substance2brand
for each row execute procedure ref.trf_do_not_update_component_if_taken_by_patient()
;
-- --------------------------------------------------------------
-- Enterprise pain killer
delete from ref.branded_drug where description like '% Starship Enterprises';
insert into ref.branded_drug (
description,
preparation,
atc_code,
is_fake
) values (
'IbuStrong Starship Enterprises',
'tablet',
'M01AE01',
True
);
delete from ref.lnk_substance2brand
where
fk_brand = (
select pk from ref.branded_drug where description = 'IbuStrong Starship Enterprises'
);
insert into ref.lnk_substance2brand (
fk_brand,
fk_substance
) values (
(select pk from ref.branded_drug where description = 'IbuStrong Starship Enterprises'),
(select pk from ref.consumable_substance where description = 'Ibuprofen-Starship')
);
-- --------------------------------------------------------------
-- f6 East German cigarettes
delete from ref.branded_drug where description like 'f6 Zigaretten';
insert into ref.branded_drug (
description,
preparation,
is_fake,
external_code,
external_code_type
) values (
'f6 Zigaretten',
'Zigarette',
False,
'4023500714150',
'DE::EAN'
);
delete from ref.lnk_substance2brand
where
fk_brand = (
select pk from ref.branded_drug where description = 'f6 Zigaretten'
);
insert into ref.lnk_substance2brand (
fk_brand,
fk_substance
) values
(
(select pk from ref.branded_drug where description = 'f6 Zigaretten'),
(select pk from ref.consumable_substance where description = 'Nikotin' and amount = 0.8 and unit = 'mg')
),
(
(select pk from ref.branded_drug where description = 'f6 Zigaretten'),
(select pk from ref.consumable_substance where description = 'Teer' and amount = 10 and unit = 'mg')
),
(
(select pk from ref.branded_drug where description = 'f6 Zigaretten'),
(select pk from ref.consumable_substance where description = 'Kohlenmonoxid' and amount = 10 and unit = 'mg')
)
;
-- --------------------------------------------------------------
-- generate ref.lnk_substance2brand entries from v14 database knowledge
\unset ON_ERROR_STOP
drop function tmp_transfer_drug_components() cascade;
\set ON_ERROR_STOP 1
create or replace function tmp_transfer_drug_components()
returns boolean
language 'plpgsql'
as '
DECLARE
_prev_record record;
BEGIN
-- 1) clin.consumed_substance
raise notice ''creating ref.lnk_substance2brand rows from clin.consumed_substance'';
for _prev_record in
SELECT
*,
ccs.description as substance,
rbd.description as brand
FROM ref.branded_drug rbd
JOIN clin.substance_intake csi ON (csi.fk_brand = rbd.pk)
JOIN clin.consumed_substance ccs ON (ccs.pk = csi.fk_substance)
WHERE
csi.fk_brand is not null
loop
if _prev_record.tmp_amount is NULL then
_prev_record.tmp_amount := 99999.4;
end if;
if _prev_record.tmp_unit is NULL then
_prev_record.tmp_amount := ''*?* (ref.substance_in_brand)'';
end if;
raise notice ''linking % (% %) to %'', _prev_record.substance, _prev_record.tmp_amount, _prev_record.tmp_unit, _prev_record.brand;
perform 1 from ref.lnk_substance2brand
where
fk_brand = _prev_record.fk_brand
and
fk_substance = (
select pk from ref.consumable_substance
where
description = _prev_record.substance
and
amount = _prev_record.tmp_amount
and
unit = _prev_record.tmp_unit
)
;
if found then
raise notice ''already exists'';
continue;
end if;
insert into ref.lnk_substance2brand (
fk_brand,
fk_substance
) values (
_prev_record.fk_brand,
(
select pk from ref.consumable_substance
where
description = _prev_record.substance
and
amount = _prev_record.tmp_amount
and
unit = _prev_record.tmp_unit
)
);
end loop;
-- -- 2) ref.substance_in_brand
-- raise notice ''creating ref.lnk_substance2brand rows from ref.substance_in_brand'';
--
-- for _prev_record in
-- SELECT
-- *,
-- rsib.description as substance,
-- rbd.description as brand
-- FROM ref.branded_drug rbd
-- JOIN ref.substance_in_brand rsib ON (rsib.fk_brand = rbd.pk)
-- loop
--
-- raise notice ''linking % to %'', _prev_record.substance, _prev_record.brand;
--
-- perform 1 from ref.lnk_substance2brand
-- where
-- fk_brand = _prev_record.fk_brand
-- and
-- fk_substance = (
-- select pk from ref.consumable_substance
-- where
-- description = _prev_record.substance
-- )
-- ;
--
-- if found then
-- raise notice ''already exists'';
-- continue;
-- end if;
--
-- insert into ref.lnk_substance2brand (
-- fk_brand,
-- fk_substance
-- ) values (
-- _prev_record.fk_brand,
-- (
-- select pk from ref.consumable_substance
-- where
-- description = _prev_record.substance
-- and
-- amount = _prev_record.tmp_amount
-- and
-- unit = _prev_record.tmp_unit
-- )
-- );
-- end loop;
return True;
END;';
select tmp_transfer_drug_components();
drop function tmp_transfer_drug_components() cascade;
-- --------------------------------------------------------------
select gm.log_script_insertion('v15-ref-lnk_substance2brand-dynamic.sql', 'Revision: 1.1');
-- ==============================================================
|