File: PAM260

package info (click to toggle)
golang-github-biogo-biogo 1.0.4-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, forky, sid, trixie
  • size: 5,332 kB
  • sloc: sh: 282; makefile: 2
file content (34 lines) | stat: -rw-r--r-- 2,068 bytes parent folder | download | duplicates (28)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
#
# This matrix was produced by "pam" Version 1.0.6 [28-Jul-93]
#
# PAM 260 substitution matrix, scale = ln(2)/3 = 0.231049
#
# Expected score = -0.794, Entropy = 0.330 bits
#
# Lowest score = -7, Highest score = 17
#
   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  Z  X  *
A  2 -1  0  0 -2  0  0  1 -1  0 -2 -1 -1 -3  1  1  1 -6 -3  0  0  0  0 -7
R -1  6  0 -1 -4  1 -1 -2  2 -2 -3  3  0 -4  0  0 -1  2 -4 -2 -1  0 -1 -7
N  0  0  2  2 -3  1  1  0  2 -2 -3  1 -2 -3  0  1  0 -4 -2 -2  2  1  0 -7
D  0 -1  2  4 -5  2  3  1  1 -2 -4  0 -2 -5 -1  0  0 -6 -4 -2  3  3 -1 -7
C -2 -4 -3 -5 12 -5 -5 -3 -3 -2 -6 -5 -5 -4 -3  0 -2 -7  0 -2 -4 -5 -3 -7
Q  0  1  1  2 -5  4  2 -1  3 -2 -2  1 -1 -4  0  0 -1 -5 -4 -2  1  3  0 -7
E  0 -1  1  3 -5  2  4  0  1 -2 -3  0 -2 -5  0  0  0 -7 -4 -2  3  3 -1 -7
G  1 -2  0  1 -3 -1  0  5 -2 -2 -4 -2 -3 -5  0  1  0 -7 -5 -1  1  0 -1 -7
H -1  2  2  1 -3  3  1 -2  6 -2 -2  0 -2 -2  0 -1 -1 -3  0 -2  1  2 -1 -7
I  0 -2 -2 -2 -2 -2 -2 -2 -2  4  2 -2  2  1 -2 -1  0 -5 -1  4 -2 -2 -1 -7
L -2 -3 -3 -4 -6 -2 -3 -4 -2  2  6 -3  4  2 -2 -3 -2 -2 -1  2 -3 -2 -1 -7
K -1  3  1  0 -5  1  0 -2  0 -2 -3  4  0 -5 -1  0  0 -3 -4 -2  1  0 -1 -7
M -1  0 -2 -2 -5 -1 -2 -3 -2  2  4  0  6  0 -2 -1 -1 -4 -2  2 -2 -2 -1 -7
F -3 -4 -3 -5 -4 -4 -5 -5 -2  1  2 -5  0  9 -4 -3 -3  0  7 -1 -4 -5 -2 -7
P  1  0  0 -1 -3  0  0  0  0 -2 -2 -1 -2 -4  6  1  0 -5 -5 -1 -1  0 -1 -7
S  1  0  1  0  0  0  0  1 -1 -1 -3  0 -1 -3  1  1  1 -2 -3 -1  0  0  0 -7
T  1 -1  0  0 -2 -1  0  0 -1  0 -2  0 -1 -3  0  1  2 -5 -3  0  0  0  0 -7
W -6  2 -4 -6 -7 -5 -7 -7 -3 -5 -2 -3 -4  0 -5 -2 -5 17  0 -6 -5 -6 -4 -7
Y -3 -4 -2 -4  0 -4 -4 -5  0 -1 -1 -4 -2  7 -5 -3 -3  0 10 -2 -3 -4 -2 -7
V  0 -2 -2 -2 -2 -2 -2 -1 -2  4  2 -2  2 -1 -1 -1  0 -6 -2  4 -2 -2 -1 -7
B  0 -1  2  3 -4  1  3  1  1 -2 -3  1 -2 -4 -1  0  0 -5 -3 -2  3  2  0 -7
Z  0  0  1  3 -5  3  3  0  2 -2 -2  0 -2 -5  0  0  0 -6 -4 -2  2  3 -1 -7
X  0 -1  0 -1 -3  0 -1 -1 -1 -1 -1 -1 -1 -2 -1  0  0 -4 -2 -1  0 -1 -1 -7
* -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7  1