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Test: FASTA/Q Parsing
Output sequences of all apps are not wrapped to fixed length.
============================================
read file once with cat
------------------------------------
== seqkit
data: dataset_A.fa
elapsed time: 5.029
peak rss: 36964
3eac76c3c6a1e6591f04ff7bd44bbb32 dataset_A.fa.seqkit.fa
------------------------------------
== seqtk
data: dataset_A.fa
elapsed time: 6.748
peak rss: 7464
3eac76c3c6a1e6591f04ff7bd44bbb32 dataset_A.fa.seqtk.fa
read file once with cat
------------------------------------
== seqkit
data: dataset_B.fa
elapsed time: 5.904
peak rss: 785128
af9e765363ffe03aaaaa0a23509f7b32 dataset_B.fa.seqkit.fa
------------------------------------
== seqtk
data: dataset_B.fa
elapsed time: 6.584
peak rss: 244876
af9e765363ffe03aaaaa0a23509f7b32 dataset_B.fa.seqtk.fa
read file once with cat
------------------------------------
== seqkit
data: dataset_C.fq
elapsed time: 9.972
peak rss: 10676
f01c87fd0f852d6ec378fab0d58952ad dataset_C.fq.seqkit.fa
------------------------------------
== seqtk
data: dataset_C.fq
elapsed time: 8.756
peak rss: 1100
f01c87fd0f852d6ec378fab0d58952ad dataset_C.fq.seqtk.fa
|
