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|
Test: Gzip compressed
Output sequences of all apps are not wrapped to fixed length.
============================================
read file once with cat
------------------------------------
== seqkit
data: dataset_A.fa.gz
elapsed time: 14.379
peak rss: 58748
3eac76c3c6a1e6591f04ff7bd44bbb32 -
------------------------------------
== seqkit_t1
data: dataset_A.fa.gz
elapsed time: 41.432
peak rss: 43884
3eac76c3c6a1e6591f04ff7bd44bbb32 -
------------------------------------
== seqtk+gzip
data: dataset_A.fa.gz
elapsed time: 460.744
peak rss: 7820
3eac76c3c6a1e6591f04ff7bd44bbb32 -
------------------------------------
== seqtk+pigz
data: dataset_A.fa.gz
elapsed time: 117.571
peak rss: 7664
3eac76c3c6a1e6591f04ff7bd44bbb32 -
read file once with cat
------------------------------------
== seqkit
data: dataset_B.fa.gz
elapsed time: 25.051
peak rss: 1044708
af9e765363ffe03aaaaa0a23509f7b32 -
------------------------------------
== seqkit_t1
data: dataset_B.fa.gz
elapsed time: 46.188
peak rss: 1041472
af9e765363ffe03aaaaa0a23509f7b32 -
------------------------------------
== seqtk+gzip
data: dataset_B.fa.gz
elapsed time: 461.238
peak rss: 245072
af9e765363ffe03aaaaa0a23509f7b32 -
------------------------------------
== seqtk+pigz
data: dataset_B.fa.gz
elapsed time: 126.616
peak rss: 245100
af9e765363ffe03aaaaa0a23509f7b32 -
read file once with cat
------------------------------------
== seqkit
data: dataset_C.fq.gz
elapsed time: 8.866
peak rss: 41016
f01c87fd0f852d6ec378fab0d58952ad -
------------------------------------
== seqkit_t1
data: dataset_C.fq.gz
elapsed time: 30.589
peak rss: 29512
f01c87fd0f852d6ec378fab0d58952ad -
------------------------------------
== seqtk+gzip
data: dataset_C.fq.gz
elapsed time: 190.831
peak rss: 1080
f01c87fd0f852d6ec378fab0d58952ad -
------------------------------------
== seqtk+pigz
data: dataset_C.fq.gz
elapsed time: 48.170
peak rss: 968
f01c87fd0f852d6ec378fab0d58952ad -
|
