File: qual_test.go

package info (click to toggle)
golang-github-shenwei356-bio 0.13.3-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 852 kB
  • sloc: perl: 114; sh: 58; makefile: 21
file content (25 lines) | stat: -rwxr-xr-x 364 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
package seq

import (
	"math"
	"testing"
)

func TestPhredAndSolexa(t *testing.T) {
	var q2, q3 float64
	var err error
	for q := 2.0; q <= 40; q++ {
		q2, err = Phred2Solexa(q)
		if err != nil {
			t.Error(err)
		}
		q3, err = Solexa2Phred(q2)
		if err != nil {
			t.Error(err)
		}

		if math.Abs(q3-q) > 0.01 {
			t.Errorf("%.2f, %.2f, %.2f", q, q2, q3)
		}
	}
}