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|
Test: Gzip compressed
Output sequences of all apps are not wrapped to fixed length.
============================================
read file once with cat
------------------------------------
== seqkit
data: dataset_A.fa.gz
elapsed time: 14.269
peak rss: 57764
3eac76c3c6a1e6591f04ff7bd44bbb32 -
------------------------------------
== seqkit_t1
data: dataset_A.fa.gz
elapsed time: 41.863
peak rss: 42856
3eac76c3c6a1e6591f04ff7bd44bbb32 -
------------------------------------
== seqtk+gzip
data: dataset_A.fa.gz
elapsed time: 461.541
peak rss: 7700
3eac76c3c6a1e6591f04ff7bd44bbb32 -
------------------------------------
== seqtk+pigz
data: dataset_A.fa.gz
elapsed time: 118.433
peak rss: 7748
3eac76c3c6a1e6591f04ff7bd44bbb32 -
read file once with cat
------------------------------------
== seqkit
data: dataset_B.fa.gz
elapsed time: 25.374
peak rss: 1045592
af9e765363ffe03aaaaa0a23509f7b32 -
------------------------------------
== seqkit_t1
data: dataset_B.fa.gz
elapsed time: 46.531
peak rss: 1043316
af9e765363ffe03aaaaa0a23509f7b32 -
------------------------------------
== seqtk+gzip
data: dataset_B.fa.gz
elapsed time: 457.706
peak rss: 245104
af9e765363ffe03aaaaa0a23509f7b32 -
------------------------------------
== seqtk+pigz
data: dataset_B.fa.gz
elapsed time: 128.742
peak rss: 245028
af9e765363ffe03aaaaa0a23509f7b32 -
read file once with cat
------------------------------------
== seqkit
data: dataset_C.fq.gz
elapsed time: 9.047
peak rss: 40948
f01c87fd0f852d6ec378fab0d58952ad -
------------------------------------
== seqkit_t1
data: dataset_C.fq.gz
elapsed time: 31.182
peak rss: 30100
f01c87fd0f852d6ec378fab0d58952ad -
------------------------------------
== seqtk+gzip
data: dataset_C.fq.gz
elapsed time: 188.893
peak rss: 1024
f01c87fd0f852d6ec378fab0d58952ad -
------------------------------------
== seqtk+pigz
data: dataset_C.fq.gz
elapsed time: 49.132
peak rss: 1080
f01c87fd0f852d6ec378fab0d58952ad -
|
