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|
Test: Gzip compressed
Output sequences of all apps are not wrapped to fixed length.
============================================
read file once with cat
------------------------------------
== seqkit
data: dataset_A.fa.gz
elapsed time: 14.493
peak rss: 57792
3eac76c3c6a1e6591f04ff7bd44bbb32 -
------------------------------------
== seqkit_t1
data: dataset_A.fa.gz
elapsed time: 40.889
peak rss: 44064
3eac76c3c6a1e6591f04ff7bd44bbb32 -
------------------------------------
== seqtk+gzip
data: dataset_A.fa.gz
elapsed time: 459.014
peak rss: 7800
3eac76c3c6a1e6591f04ff7bd44bbb32 -
------------------------------------
== seqtk+pigz
data: dataset_A.fa.gz
elapsed time: 119.257
peak rss: 7724
3eac76c3c6a1e6591f04ff7bd44bbb32 -
read file once with cat
------------------------------------
== seqkit
data: dataset_B.fa.gz
elapsed time: 25.457
peak rss: 1045288
af9e765363ffe03aaaaa0a23509f7b32 -
------------------------------------
== seqkit_t1
data: dataset_B.fa.gz
elapsed time: 46.805
peak rss: 1042332
af9e765363ffe03aaaaa0a23509f7b32 -
------------------------------------
== seqtk+gzip
data: dataset_B.fa.gz
elapsed time: 467.395
peak rss: 245208
af9e765363ffe03aaaaa0a23509f7b32 -
------------------------------------
== seqtk+pigz
data: dataset_B.fa.gz
elapsed time: 130.173
peak rss: 245100
af9e765363ffe03aaaaa0a23509f7b32 -
read file once with cat
------------------------------------
== seqkit
data: dataset_C.fq.gz
elapsed time: 9.055
peak rss: 39380
f01c87fd0f852d6ec378fab0d58952ad -
------------------------------------
== seqkit_t1
data: dataset_C.fq.gz
elapsed time: 30.655
peak rss: 29424
f01c87fd0f852d6ec378fab0d58952ad -
------------------------------------
== seqtk+gzip
data: dataset_C.fq.gz
elapsed time: 191.151
peak rss: 968
f01c87fd0f852d6ec378fab0d58952ad -
------------------------------------
== seqtk+pigz
data: dataset_C.fq.gz
elapsed time: 49.281
peak rss: 964
f01c87fd0f852d6ec378fab0d58952ad -
|
