1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673
|
package base
import (
"math"
"unsafe"
)
// precalculate infinity
var mathInfNeg = math.Inf(-1)
var mathInfPos = math.Inf(+1)
type treeNode struct {
min, max []float64
children []*treeNode
count int
height int
leaf bool
}
func (node *treeNode) unsafeItem() *treeItem {
return (*treeItem)(unsafe.Pointer(node))
}
func (tr *RTree) createNode(children []*treeNode) *treeNode {
n := &treeNode{
height: 1,
leaf: true,
children: make([]*treeNode, tr.maxEntries+1),
}
if len(children) > 0 {
n.count = len(children)
copy(n.children[:n.count], children)
}
n.min = make([]float64, tr.dims)
n.max = make([]float64, tr.dims)
for i := 0; i < tr.dims; i++ {
n.min[i] = mathInfPos
n.max[i] = mathInfNeg
}
return n
}
func (node *treeNode) extend(b *treeNode) {
for i := 0; i < len(node.min); i++ {
if b.min[i] < node.min[i] {
node.min[i] = b.min[i]
}
if b.max[i] > node.max[i] {
node.max[i] = b.max[i]
}
}
}
func (node *treeNode) area() float64 {
area := node.max[0] - node.min[0]
for i := 1; i < len(node.min); i++ {
area *= node.max[i] - node.min[i]
}
return area
}
func (node *treeNode) enlargedAreaAxis(b *treeNode, axis int) float64 {
var max, min float64
if b.max[axis] > node.max[axis] {
max = b.max[axis]
} else {
max = node.max[axis]
}
if b.min[axis] < node.min[axis] {
min = b.min[axis]
} else {
min = node.min[axis]
}
return max - min
}
func (node *treeNode) enlargedArea(b *treeNode) float64 {
area := node.enlargedAreaAxis(b, 0)
for i := 1; i < len(node.min); i++ {
area *= node.enlargedAreaAxis(b, i)
}
return area
}
func (node *treeNode) intersectionAreaAxis(b *treeNode, axis int) float64 {
var max, min float64
if node.max[axis] < b.max[axis] {
max = node.max[axis]
} else {
max = b.max[axis]
}
if node.min[axis] > b.min[axis] {
min = node.min[axis]
} else {
min = b.min[axis]
}
if max > min {
return max - min
}
return 0
}
func (node *treeNode) intersectionArea(b *treeNode) float64 {
area := node.intersectionAreaAxis(b, 0)
for i := 1; i < len(node.min); i++ {
area *= node.intersectionAreaAxis(b, i)
}
return area
}
func (node *treeNode) margin() float64 {
margin := node.max[0] - node.min[0]
for i := 1; i < len(node.min); i++ {
margin += node.max[i] - node.min[i]
}
return margin
}
type result int
const (
not result = 0
intersects result = 1
contains result = 2
)
func (node *treeNode) overlaps(b *treeNode) result {
for i := 0; i < len(node.min); i++ {
if b.min[i] > node.max[i] || b.max[i] < node.min[i] {
return not
}
if node.min[i] > b.min[i] || b.max[i] > node.max[i] {
i++
for ; i < len(node.min); i++ {
if b.min[i] > node.max[i] || b.max[i] < node.min[i] {
return not
}
}
return intersects
}
}
return contains
}
func (node *treeNode) intersects(b *treeNode) bool {
for i := 0; i < len(node.min); i++ {
if b.min[i] > node.max[i] || b.max[i] < node.min[i] {
return false
}
}
return true
}
func (node *treeNode) findItem(item interface{}) int {
for i := 0; i < node.count; i++ {
if node.children[i].unsafeItem().item == item {
return i
}
}
return -1
}
func (node *treeNode) contains(b *treeNode) bool {
for i := 0; i < len(node.min); i++ {
if node.min[i] > b.min[i] || b.max[i] > node.max[i] {
return false
}
}
return true
}
func (node *treeNode) childCount() int {
if node.leaf {
return node.count
}
var n int
for i := 0; i < node.count; i++ {
n += node.children[i].childCount()
}
return n
}
type treeItem struct {
min, max []float64
item interface{}
}
func (item *treeItem) unsafeNode() *treeNode {
return (*treeNode)(unsafe.Pointer(item))
}
// RTree is an R-tree
type RTree struct {
dims int
maxEntries int
minEntries int
data *treeNode // root node
// resusable fields, these help performance of common mutable operations.
reuse struct {
path []*treeNode // for reinsertion path
indexes []int // for remove function
stack []int // for bulk loading
}
}
// New creates a new R-tree
func New(dims, maxEntries int) *RTree {
if dims <= 0 {
panic("invalid dimensions")
}
tr := &RTree{}
tr.dims = dims
tr.maxEntries = int(math.Max(4, float64(maxEntries)))
tr.minEntries = int(math.Max(2, math.Ceil(float64(tr.maxEntries)*0.4)))
tr.data = tr.createNode(nil)
return tr
}
// Insert inserts an item
func (tr *RTree) Insert(min, max []float64, item interface{}) {
if len(min) != tr.dims || len(max) != tr.dims {
panic("invalid dimensions")
}
if item == nil {
panic("nil item")
}
bbox := treeNode{min: min, max: max}
tr.insert(&bbox, item, tr.data.height-1, false)
}
func (tr *RTree) insert(bbox *treeNode, item interface{}, level int, isNode bool) {
tr.reuse.path = tr.reuse.path[:0]
node, insertPath := tr.chooseSubtree(bbox, tr.data, level, tr.reuse.path)
if item == nil {
// item is only nil when bulk loading a node
if node.leaf {
panic("loading node into leaf")
}
node.children[node.count] = bbox
node.count++
} else {
ti := &treeItem{min: bbox.min, max: bbox.max, item: item}
node.children[node.count] = ti.unsafeNode()
node.count++
}
node.extend(bbox)
for level >= 0 {
if insertPath[level].count > tr.maxEntries {
insertPath = tr.split(insertPath, level)
level--
} else {
break
}
}
tr.adjustParentBBoxes(bbox, insertPath, level)
tr.reuse.path = insertPath
}
func (tr *RTree) adjustParentBBoxes(bbox *treeNode, path []*treeNode, level int) {
// adjust bboxes along the given tree path
for i := level; i >= 0; i-- {
path[i].extend(bbox)
}
}
func (tr *RTree) chooseSubtree(bbox, node *treeNode, level int, path []*treeNode) (*treeNode, []*treeNode) {
var targetNode *treeNode
var area, enlargement, minArea, minEnlargement float64
for {
path = append(path, node)
if node.leaf || len(path)-1 == level {
break
}
minEnlargement = mathInfPos
minArea = minEnlargement
for i := 0; i < node.count; i++ {
child := node.children[i]
area = child.area()
enlargement = bbox.enlargedArea(child) - area
if enlargement < minEnlargement {
minEnlargement = enlargement
if area < minArea {
minArea = area
}
targetNode = child
} else if enlargement == minEnlargement {
if area < minArea {
minArea = area
targetNode = child
}
}
}
if targetNode != nil {
node = targetNode
} else if node.count > 0 {
node = (*treeNode)(node.children[0])
} else {
node = nil
}
}
return node, path
}
func (tr *RTree) split(insertPath []*treeNode, level int) []*treeNode {
var node = insertPath[level]
var M = node.count
var m = tr.minEntries
tr.chooseSplitAxis(node, m, M)
splitIndex := tr.chooseSplitIndex(node, m, M)
spliced := make([]*treeNode, node.count-splitIndex)
copy(spliced, node.children[splitIndex:])
node.count = splitIndex
newNode := tr.createNode(spliced)
newNode.height = node.height
newNode.leaf = node.leaf
tr.calcBBox(node)
tr.calcBBox(newNode)
if level != 0 {
insertPath[level-1].children[insertPath[level-1].count] = newNode
insertPath[level-1].count++
} else {
tr.splitRoot(node, newNode)
}
return insertPath
}
func (tr *RTree) chooseSplitIndex(node *treeNode, m, M int) int {
var i int
var bbox1, bbox2 *treeNode
var overlap, area, minOverlap, minArea float64
var index int
minArea = mathInfPos
minOverlap = minArea
for i = m; i <= M-m; i++ {
bbox1 = tr.distBBox(node, 0, i, nil)
bbox2 = tr.distBBox(node, i, M, nil)
overlap = bbox1.intersectionArea(bbox2)
area = bbox1.area() + bbox2.area()
// choose distribution with minimum overlap
if overlap < minOverlap {
minOverlap = overlap
index = i
if area < minArea {
minArea = area
}
} else if overlap == minOverlap {
// otherwise choose distribution with minimum area
if area < minArea {
minArea = area
index = i
}
}
}
return index
}
func (tr *RTree) calcBBox(node *treeNode) {
tr.distBBox(node, 0, node.count, node)
}
func (tr *RTree) chooseSplitAxis(node *treeNode, m, M int) {
minMargin := tr.allDistMargin(node, m, M, 0)
var minAxis int
for axis := 1; axis < tr.dims; axis++ {
margin := tr.allDistMargin(node, m, M, axis)
if margin < minMargin {
minMargin = margin
minAxis = axis
}
}
if minAxis < tr.dims {
tr.sortNodes(node, minAxis)
}
}
func (tr *RTree) splitRoot(node, newNode *treeNode) {
tr.data = tr.createNode([]*treeNode{node, newNode})
tr.data.height = node.height + 1
tr.data.leaf = false
tr.calcBBox(tr.data)
}
func (tr *RTree) distBBox(node *treeNode, k, p int, destNode *treeNode) *treeNode {
if destNode == nil {
destNode = tr.createNode(nil)
} else {
for i := 0; i < tr.dims; i++ {
destNode.min[i] = mathInfPos
destNode.max[i] = mathInfNeg
}
}
for i := k; i < p; i++ {
if node.leaf {
destNode.extend(node.children[i])
} else {
destNode.extend((*treeNode)(node.children[i]))
}
}
return destNode
}
func (tr *RTree) allDistMargin(node *treeNode, m, M int, axis int) float64 {
tr.sortNodes(node, axis)
var leftBBox = tr.distBBox(node, 0, m, nil)
var rightBBox = tr.distBBox(node, M-m, M, nil)
var margin = leftBBox.margin() + rightBBox.margin()
var i int
if node.leaf {
for i = m; i < M-m; i++ {
leftBBox.extend(node.children[i])
margin += leftBBox.margin()
}
for i = M - m - 1; i >= m; i-- {
leftBBox.extend(node.children[i])
margin += rightBBox.margin()
}
} else {
for i = m; i < M-m; i++ {
child := (*treeNode)(node.children[i])
leftBBox.extend(child)
margin += leftBBox.margin()
}
for i = M - m - 1; i >= m; i-- {
child := (*treeNode)(node.children[i])
leftBBox.extend(child)
margin += rightBBox.margin()
}
}
return margin
}
func (tr *RTree) sortNodes(node *treeNode, axis int) {
sortByAxis(node.children[:node.count], axis)
}
func sortByAxis(items []*treeNode, axis int) {
if len(items) < 2 {
return
}
left, right := 0, len(items)-1
pivotIndex := len(items) / 2
items[pivotIndex], items[right] = items[right], items[pivotIndex]
for i := range items {
if items[i].min[axis] < items[right].min[axis] {
items[i], items[left] = items[left], items[i]
left++
}
}
items[left], items[right] = items[right], items[left]
sortByAxis(items[:left], axis)
sortByAxis(items[left+1:], axis)
}
// Search searches the tree for items in the input rectangle
func (tr *RTree) Search(min, max []float64, iter func(item interface{}) bool) bool {
bbox := &treeNode{min: min, max: max}
if !tr.data.intersects(bbox) {
return true
}
return tr.search(tr.data, bbox, iter)
}
func (tr *RTree) search(node, bbox *treeNode, iter func(item interface{}) bool) bool {
if node.leaf {
for i := 0; i < node.count; i++ {
if bbox.intersects(node.children[i]) {
if !iter(node.children[i].unsafeItem().item) {
return false
}
}
}
} else {
for i := 0; i < node.count; i++ {
r := bbox.overlaps(node.children[i])
if r == intersects {
if !tr.search(node.children[i], bbox, iter) {
return false
}
} else if r == contains {
if !scan(node.children[i], iter) {
return false
}
}
}
}
return true
}
func (tr *RTree) IsEmpty() bool {
empty := true
tr.Scan(func(item interface{}) bool {
empty = false
return false
})
return empty
}
// Remove removes an item from the R-tree.
func (tr *RTree) Remove(min, max []float64, item interface{}) {
bbox := &treeNode{min: min, max: max}
tr.remove(bbox, item)
}
func (tr *RTree) remove(bbox *treeNode, item interface{}) {
path := tr.reuse.path[:0]
indexes := tr.reuse.indexes[:0]
var node = tr.data
var i int
var parent *treeNode
var index int
var goingUp bool
for node != nil || len(path) != 0 {
if node == nil {
node = path[len(path)-1]
path = path[:len(path)-1]
if len(path) == 0 {
parent = nil
} else {
parent = path[len(path)-1]
}
i = indexes[len(indexes)-1]
indexes = indexes[:len(indexes)-1]
goingUp = true
}
if node.leaf {
index = node.findItem(item)
if index != -1 {
// item found, remove the item and condense tree upwards
copy(node.children[index:], node.children[index+1:])
node.children[node.count-1] = nil
node.count--
path = append(path, node)
tr.condense(path)
goto done
}
}
if !goingUp && !node.leaf && node.contains(bbox) { // go down
path = append(path, node)
indexes = append(indexes, i)
i = 0
parent = node
node = (*treeNode)(node.children[0])
} else if parent != nil { // go right
i++
if i == parent.count {
node = nil
} else {
node = (*treeNode)(parent.children[i])
}
goingUp = false
} else {
node = nil
}
}
done:
tr.reuse.path = path
tr.reuse.indexes = indexes
return
}
func (tr *RTree) condense(path []*treeNode) {
// go through the path, removing empty nodes and updating bboxes
var siblings []*treeNode
for i := len(path) - 1; i >= 0; i-- {
if path[i].count == 0 {
if i > 0 {
siblings = path[i-1].children[:path[i-1].count]
index := -1
for j := 0; j < len(siblings); j++ {
if siblings[j] == path[i] {
index = j
break
}
}
copy(siblings[index:], siblings[index+1:])
siblings[len(siblings)-1] = nil
path[i-1].count--
//siblings = siblings[:len(siblings)-1]
//path[i-1].children = siblings
} else {
tr.data = tr.createNode(nil) // clear tree
}
} else {
tr.calcBBox(path[i])
}
}
}
// Count returns the number of items in the R-tree.
func (tr *RTree) Count() int {
return tr.data.childCount()
}
// Traverse iterates over the entire R-tree and includes all nodes and items.
func (tr *RTree) Traverse(iter func(min, max []float64, level int, item interface{}) bool) bool {
return tr.traverse(tr.data, iter)
}
func (tr *RTree) traverse(node *treeNode, iter func(min, max []float64, level int, item interface{}) bool) bool {
if !iter(node.min, node.max, int(node.height), nil) {
return false
}
if node.leaf {
for i := 0; i < node.count; i++ {
child := node.children[i]
if !iter(child.min, child.max, 0, child.unsafeItem().item) {
return false
}
}
} else {
for i := 0; i < node.count; i++ {
child := node.children[i]
if !tr.traverse(child, iter) {
return false
}
}
}
return true
}
// Scan iterates over the entire R-tree
func (tr *RTree) Scan(iter func(item interface{}) bool) bool {
return scan(tr.data, iter)
}
func scan(node *treeNode, iter func(item interface{}) bool) bool {
if node.leaf {
for i := 0; i < node.count; i++ {
child := node.children[i]
if !iter(child.unsafeItem().item) {
return false
}
}
} else {
for i := 0; i < node.count; i++ {
child := node.children[i]
if !scan(child, iter) {
return false
}
}
}
return true
}
// Bounds returns the bounding box of the entire R-tree
func (tr *RTree) Bounds() (min, max []float64) {
if tr.data.count > 0 {
return tr.data.min, tr.data.max
}
return make([]float64, tr.dims), make([]float64, tr.dims)
}
// Complexity returns the complexity of the R-tree. The higher the value, the
// more complex the tree. The value of 1 is the lowest.
func (tr *RTree) Complexity() float64 {
var nodeCount int
var itemCount int
tr.Traverse(func(_, _ []float64, level int, _ interface{}) bool {
if level == 0 {
itemCount++
} else {
nodeCount++
}
return true
})
return float64(tr.maxEntries*nodeCount) / float64(itemCount)
}
|