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// Copyright ©2017 The Gonum Authors. All rights reserved.
// Use of this source code is governed by a BSD-style
// license that can be found in the LICENSE file.
package samplemv
import (
"fmt"
"golang.org/x/exp/rand"
"gonum.org/v1/gonum/mat"
"gonum.org/v1/gonum/stat/distmv"
)
// Halton is a type for sampling using the Halton sequence from
// the given distribution. The specific method for scrambling (or lack thereof)
// is specified by the HaltonKind. If src is not nil, it will be used to generate
// the randomness needed to scramble the sequence (if necessary), otherwise
// the rand package will be used. Halton panics if the HaltonKind is unrecognized
// or if q is nil.
//
// Halton sequence random number generation is a quasi-Monte Carlo procedure
// where the samples are generated to be evenly spaced out across the distribution.
// Note that this means the sample locations are correlated with one another.
// The distmv.NewUnitUniform function can be used for easy sampling from the unit hypercube.
type Halton struct {
Kind HaltonKind
Q distmv.Quantiler
Src rand.Source
}
// Sample generates rows(batch) samples using the Halton generation procedure.
func (h Halton) Sample(batch *mat.Dense) {
halton(batch, h.Kind, h.Q, h.Src)
}
// HaltonKind specifies the type of algorithm used to generate Halton samples.
type HaltonKind int
const (
// Owen generates (scrambled) Halton samples using the Randomized van der Corput
// algorithm described in
// A randomized Halton algorithm
// Art Owen
// https://arxiv.org/pdf/1706.02808.pdf
// Currently limited to 1000 dimensional inputs.
Owen = iota + 1
)
func halton(batch *mat.Dense, kind HaltonKind, q distmv.Quantiler, src rand.Source) {
// Code based from https://arxiv.org/pdf/1706.02808.pdf .
perm := rand.Perm
if src != nil {
perm = rand.New(src).Perm
}
n, d := batch.Dims()
// Each case should generate random numbers over the unit cube.
switch kind {
default:
panic("halton: unknown HaltonKind")
case Owen:
for j := 0; j < d; j++ {
b := nthPrime(j)
div := int64(1)
b2r := 1 / float64(b)
for 1-b2r < 1 {
p := perm(b)
for i := 0; i < n; i++ {
dig := (int64(i) / div) % int64(b)
pdig := float64(p[dig])
v := batch.At(i, j)
v += pdig * b2r
batch.Set(i, j, v)
}
div *= int64(b)
b2r /= float64(b)
}
}
}
p := make([]float64, d)
for i := 0; i < n; i++ {
copy(p, batch.RawRowView(i))
q.Quantile(batch.RawRowView(i), p)
}
}
// nthPrime returns the nth prime number (0 indexed).
func nthPrime(n int) int {
if n > len(firstPrimes) {
panic(fmt.Sprintf("halton: dimension must be less than %d", len(firstPrimes)))
}
return firstPrimes[n]
}
var firstPrimes = []int{2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, 37, 41, 43, 47,
53, 59, 61, 67, 71, 73, 79, 83, 89, 97, 101, 103, 107, 109, 113, 127, 131,
137, 139, 149, 151, 157, 163, 167, 173, 179, 181, 191, 193, 197, 199, 211,
223, 227, 229, 233, 239, 241, 251, 257, 263, 269, 271, 277, 281, 283, 293,
307, 311, 313, 317, 331, 337, 347, 349, 353, 359, 367, 373, 379, 383, 389,
397, 401, 409, 419, 421, 431, 433, 439, 443, 449, 457, 461, 463, 467, 479,
487, 491, 499, 503, 509, 521, 523, 541, 547, 557, 563, 569, 571, 577, 587,
593, 599, 601, 607, 613, 617, 619, 631, 641, 643, 647, 653, 659, 661, 673,
677, 683, 691, 701, 709, 719, 727, 733, 739, 743, 751, 757, 761, 769, 773,
787, 797, 809, 811, 821, 823, 827, 829, 839, 853, 857, 859, 863, 877, 881,
883, 887, 907, 911, 919, 929, 937, 941, 947, 953, 967, 971, 977, 983, 991,
997, 1009, 1013, 1019, 1021, 1031, 1033, 1039, 1049, 1051, 1061, 1063, 1069,
1087, 1091, 1093, 1097, 1103, 1109, 1117, 1123, 1129, 1151, 1153, 1163, 1171,
1181, 1187, 1193, 1201, 1213, 1217, 1223, 1229, 1231, 1237, 1249, 1259, 1277,
1279, 1283, 1289, 1291, 1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367,
1373, 1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451, 1453, 1459,
1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511, 1523, 1531, 1543, 1549, 1553,
1559, 1567, 1571, 1579, 1583, 1597, 1601, 1607, 1609, 1613, 1619, 1621, 1627,
1637, 1657, 1663, 1667, 1669, 1693, 1697, 1699, 1709, 1721, 1723, 1733, 1741,
1747, 1753, 1759, 1777, 1783, 1787, 1789, 1801, 1811, 1823, 1831, 1847, 1861,
1867, 1871, 1873, 1877, 1879, 1889, 1901, 1907, 1913, 1931, 1933, 1949, 1951,
1973, 1979, 1987, 1993, 1997, 1999, 2003, 2011, 2017, 2027, 2029, 2039, 2053,
2063, 2069, 2081, 2083, 2087, 2089, 2099, 2111, 2113, 2129, 2131, 2137, 2141,
2143, 2153, 2161, 2179, 2203, 2207, 2213, 2221, 2237, 2239, 2243, 2251, 2267,
2269, 2273, 2281, 2287, 2293, 2297, 2309, 2311, 2333, 2339, 2341, 2347, 2351,
2357, 2371, 2377, 2381, 2383, 2389, 2393, 2399, 2411, 2417, 2423, 2437, 2441,
2447, 2459, 2467, 2473, 2477, 2503, 2521, 2531, 2539, 2543, 2549, 2551, 2557,
2579, 2591, 2593, 2609, 2617, 2621, 2633, 2647, 2657, 2659, 2663, 2671, 2677,
2683, 2687, 2689, 2693, 2699, 2707, 2711, 2713, 2719, 2729, 2731, 2741, 2749,
2753, 2767, 2777, 2789, 2791, 2797, 2801, 2803, 2819, 2833, 2837, 2843, 2851,
2857, 2861, 2879, 2887, 2897, 2903, 2909, 2917, 2927, 2939, 2953, 2957, 2963,
2969, 2971, 2999, 3001, 3011, 3019, 3023, 3037, 3041, 3049, 3061, 3067, 3079,
3083, 3089, 3109, 3119, 3121, 3137, 3163, 3167, 3169, 3181, 3187, 3191, 3203,
3209, 3217, 3221, 3229, 3251, 3253, 3257, 3259, 3271, 3299, 3301, 3307, 3313,
3319, 3323, 3329, 3331, 3343, 3347, 3359, 3361, 3371, 3373, 3389, 3391, 3407,
3413, 3433, 3449, 3457, 3461, 3463, 3467, 3469, 3491, 3499, 3511, 3517, 3527,
3529, 3533, 3539, 3541, 3547, 3557, 3559, 3571, 3581, 3583, 3593, 3607, 3613,
3617, 3623, 3631, 3637, 3643, 3659, 3671, 3673, 3677, 3691, 3697, 3701, 3709,
3719, 3727, 3733, 3739, 3761, 3767, 3769, 3779, 3793, 3797, 3803, 3821, 3823,
3833, 3847, 3851, 3853, 3863, 3877, 3881, 3889, 3907, 3911, 3917, 3919, 3923,
3929, 3931, 3943, 3947, 3967, 3989, 4001, 4003, 4007, 4013, 4019, 4021, 4027,
4049, 4051, 4057, 4073, 4079, 4091, 4093, 4099, 4111, 4127, 4129, 4133, 4139,
4153, 4157, 4159, 4177, 4201, 4211, 4217, 4219, 4229, 4231, 4241, 4243, 4253,
4259, 4261, 4271, 4273, 4283, 4289, 4297, 4327, 4337, 4339, 4349, 4357, 4363,
4373, 4391, 4397, 4409, 4421, 4423, 4441, 4447, 4451, 4457, 4463, 4481, 4483,
4493, 4507, 4513, 4517, 4519, 4523, 4547, 4549, 4561, 4567, 4583, 4591, 4597,
4603, 4621, 4637, 4639, 4643, 4649, 4651, 4657, 4663, 4673, 4679, 4691, 4703,
4721, 4723, 4729, 4733, 4751, 4759, 4783, 4787, 4789, 4793, 4799, 4801, 4813,
4817, 4831, 4861, 4871, 4877, 4889, 4903, 4909, 4919, 4931, 4933, 4937, 4943,
4951, 4957, 4967, 4969, 4973, 4987, 4993, 4999, 5003, 5009, 5011, 5021, 5023,
5039, 5051, 5059, 5077, 5081, 5087, 5099, 5101, 5107, 5113, 5119, 5147, 5153,
5167, 5171, 5179, 5189, 5197, 5209, 5227, 5231, 5233, 5237, 5261, 5273, 5279,
5281, 5297, 5303, 5309, 5323, 5333, 5347, 5351, 5381, 5387, 5393, 5399, 5407,
5413, 5417, 5419, 5431, 5437, 5441, 5443, 5449, 5471, 5477, 5479, 5483, 5501,
5503, 5507, 5519, 5521, 5527, 5531, 5557, 5563, 5569, 5573, 5581, 5591, 5623,
5639, 5641, 5647, 5651, 5653, 5657, 5659, 5669, 5683, 5689, 5693, 5701, 5711,
5717, 5737, 5741, 5743, 5749, 5779, 5783, 5791, 5801, 5807, 5813, 5821, 5827,
5839, 5843, 5849, 5851, 5857, 5861, 5867, 5869, 5879, 5881, 5897, 5903, 5923,
5927, 5939, 5953, 5981, 5987, 6007, 6011, 6029, 6037, 6043, 6047, 6053, 6067,
6073, 6079, 6089, 6091, 6101, 6113, 6121, 6131, 6133, 6143, 6151, 6163, 6173,
6197, 6199, 6203, 6211, 6217, 6221, 6229, 6247, 6257, 6263, 6269, 6271, 6277,
6287, 6299, 6301, 6311, 6317, 6323, 6329, 6337, 6343, 6353, 6359, 6361, 6367,
6373, 6379, 6389, 6397, 6421, 6427, 6449, 6451, 6469, 6473, 6481, 6491, 6521,
6529, 6547, 6551, 6553, 6563, 6569, 6571, 6577, 6581, 6599, 6607, 6619, 6637,
6653, 6659, 6661, 6673, 6679, 6689, 6691, 6701, 6703, 6709, 6719, 6733, 6737,
6761, 6763, 6779, 6781, 6791, 6793, 6803, 6823, 6827, 6829, 6833, 6841, 6857,
6863, 6869, 6871, 6883, 6899, 6907, 6911, 6917, 6947, 6949, 6959, 6961, 6967,
6971, 6977, 6983, 6991, 6997, 7001, 7013, 7019, 7027, 7039, 7043, 7057, 7069,
7079, 7103, 7109, 7121, 7127, 7129, 7151, 7159, 7177, 7187, 7193, 7207, 7211,
7213, 7219, 7229, 7237, 7243, 7247, 7253, 7283, 7297, 7307, 7309, 7321, 7331,
7333, 7349, 7351, 7369, 7393, 7411, 7417, 7433, 7451, 7457, 7459, 7477, 7481,
7487, 7489, 7499, 7507, 7517, 7523, 7529, 7537, 7541, 7547, 7549, 7559, 7561,
7573, 7577, 7583, 7589, 7591, 7603, 7607, 7621, 7639, 7643, 7649, 7669, 7673,
7681, 7687, 7691, 7699, 7703, 7717, 7723, 7727, 7741, 7753, 7757, 7759, 7789,
7793, 7817, 7823, 7829, 7841, 7853, 7867, 7873, 7877, 7879, 7883, 7901, 7907,
7919,
}
|
