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// Code generated by protoc-gen-go.
// source: google.golang.org/genproto/googleapis/genomics/v1/variants.proto
// DO NOT EDIT!
package google_genomics_v1
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
import math "math"
import _ "google.golang.org/genproto/googleapis/api/serviceconfig"
import google_longrunning "google.golang.org/genproto/googleapis/longrunning"
import google_protobuf1 "github.com/golang/protobuf/ptypes/empty"
import google_protobuf2 "google.golang.org/genproto/protobuf"
import google_protobuf3 "github.com/golang/protobuf/ptypes/struct"
import (
context "golang.org/x/net/context"
grpc "google.golang.org/grpc"
)
// Reference imports to suppress errors if they are not otherwise used.
var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// Operations to be performed during import on Variant info fields.
// These operations are set for each info field in the info_merge_config
// map of ImportVariantsRequest, which is plumbed down to the
// MergeVariantRequests generated by the import job.
type InfoMergeOperation int32
const (
InfoMergeOperation_INFO_MERGE_OPERATION_UNSPECIFIED InfoMergeOperation = 0
// By default, Variant info fields are persisted if the Variant doesn't
// already exist in the variantset. If the Variant is equivalent to a
// Variant already in the variantset, the incoming Variant's info field
// is ignored in favor of that of the already persisted Variant.
InfoMergeOperation_IGNORE_NEW InfoMergeOperation = 1
// This operation removes an info field from the incoming Variant
// and persists this info field in each of the incoming Variant's Calls.
InfoMergeOperation_MOVE_TO_CALLS InfoMergeOperation = 2
)
var InfoMergeOperation_name = map[int32]string{
0: "INFO_MERGE_OPERATION_UNSPECIFIED",
1: "IGNORE_NEW",
2: "MOVE_TO_CALLS",
}
var InfoMergeOperation_value = map[string]int32{
"INFO_MERGE_OPERATION_UNSPECIFIED": 0,
"IGNORE_NEW": 1,
"MOVE_TO_CALLS": 2,
}
func (x InfoMergeOperation) String() string {
return proto.EnumName(InfoMergeOperation_name, int32(x))
}
func (InfoMergeOperation) EnumDescriptor() ([]byte, []int) { return fileDescriptor11, []int{0} }
type VariantSetMetadata_Type int32
const (
VariantSetMetadata_TYPE_UNSPECIFIED VariantSetMetadata_Type = 0
VariantSetMetadata_INTEGER VariantSetMetadata_Type = 1
VariantSetMetadata_FLOAT VariantSetMetadata_Type = 2
VariantSetMetadata_FLAG VariantSetMetadata_Type = 3
VariantSetMetadata_CHARACTER VariantSetMetadata_Type = 4
VariantSetMetadata_STRING VariantSetMetadata_Type = 5
)
var VariantSetMetadata_Type_name = map[int32]string{
0: "TYPE_UNSPECIFIED",
1: "INTEGER",
2: "FLOAT",
3: "FLAG",
4: "CHARACTER",
5: "STRING",
}
var VariantSetMetadata_Type_value = map[string]int32{
"TYPE_UNSPECIFIED": 0,
"INTEGER": 1,
"FLOAT": 2,
"FLAG": 3,
"CHARACTER": 4,
"STRING": 5,
}
func (x VariantSetMetadata_Type) String() string {
return proto.EnumName(VariantSetMetadata_Type_name, int32(x))
}
func (VariantSetMetadata_Type) EnumDescriptor() ([]byte, []int) { return fileDescriptor11, []int{0, 0} }
type ImportVariantsRequest_Format int32
const (
ImportVariantsRequest_FORMAT_UNSPECIFIED ImportVariantsRequest_Format = 0
// VCF (Variant Call Format). The VCF files should be uncompressed. gVCF is
// also supported.
ImportVariantsRequest_FORMAT_VCF ImportVariantsRequest_Format = 1
// Complete Genomics masterVarBeta format. The masterVarBeta files should
// be bzip2 compressed.
ImportVariantsRequest_FORMAT_COMPLETE_GENOMICS ImportVariantsRequest_Format = 2
)
var ImportVariantsRequest_Format_name = map[int32]string{
0: "FORMAT_UNSPECIFIED",
1: "FORMAT_VCF",
2: "FORMAT_COMPLETE_GENOMICS",
}
var ImportVariantsRequest_Format_value = map[string]int32{
"FORMAT_UNSPECIFIED": 0,
"FORMAT_VCF": 1,
"FORMAT_COMPLETE_GENOMICS": 2,
}
func (x ImportVariantsRequest_Format) String() string {
return proto.EnumName(ImportVariantsRequest_Format_name, int32(x))
}
func (ImportVariantsRequest_Format) EnumDescriptor() ([]byte, []int) {
return fileDescriptor11, []int{6, 0}
}
type ExportVariantSetRequest_Format int32
const (
ExportVariantSetRequest_FORMAT_UNSPECIFIED ExportVariantSetRequest_Format = 0
// Export the data to Google BigQuery.
ExportVariantSetRequest_FORMAT_BIGQUERY ExportVariantSetRequest_Format = 1
)
var ExportVariantSetRequest_Format_name = map[int32]string{
0: "FORMAT_UNSPECIFIED",
1: "FORMAT_BIGQUERY",
}
var ExportVariantSetRequest_Format_value = map[string]int32{
"FORMAT_UNSPECIFIED": 0,
"FORMAT_BIGQUERY": 1,
}
func (x ExportVariantSetRequest_Format) String() string {
return proto.EnumName(ExportVariantSetRequest_Format_name, int32(x))
}
func (ExportVariantSetRequest_Format) EnumDescriptor() ([]byte, []int) {
return fileDescriptor11, []int{9, 0}
}
// Metadata describes a single piece of variant call metadata.
// These data include a top level key and either a single value string (value)
// or a list of key-value pairs (info.)
// Value and info are mutually exclusive.
type VariantSetMetadata struct {
// The top-level key.
Key string `protobuf:"bytes,1,opt,name=key" json:"key,omitempty"`
// The value field for simple metadata
Value string `protobuf:"bytes,2,opt,name=value" json:"value,omitempty"`
// User-provided ID field, not enforced by this API.
// Two or more pieces of structured metadata with identical
// id and key fields are considered equivalent.
Id string `protobuf:"bytes,4,opt,name=id" json:"id,omitempty"`
// The type of data. Possible types include: Integer, Float,
// Flag, Character, and String.
Type VariantSetMetadata_Type `protobuf:"varint,5,opt,name=type,enum=google.genomics.v1.VariantSetMetadata_Type" json:"type,omitempty"`
// The number of values that can be included in a field described by this
// metadata.
Number string `protobuf:"bytes,8,opt,name=number" json:"number,omitempty"`
// A textual description of this metadata.
Description string `protobuf:"bytes,7,opt,name=description" json:"description,omitempty"`
// Remaining structured metadata key-value pairs. This must be of the form
// map<string, string[]> (string key mapping to a list of string values).
Info map[string]*google_protobuf3.ListValue `protobuf:"bytes,3,rep,name=info" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
}
func (m *VariantSetMetadata) Reset() { *m = VariantSetMetadata{} }
func (m *VariantSetMetadata) String() string { return proto.CompactTextString(m) }
func (*VariantSetMetadata) ProtoMessage() {}
func (*VariantSetMetadata) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{0} }
func (m *VariantSetMetadata) GetKey() string {
if m != nil {
return m.Key
}
return ""
}
func (m *VariantSetMetadata) GetValue() string {
if m != nil {
return m.Value
}
return ""
}
func (m *VariantSetMetadata) GetId() string {
if m != nil {
return m.Id
}
return ""
}
func (m *VariantSetMetadata) GetType() VariantSetMetadata_Type {
if m != nil {
return m.Type
}
return VariantSetMetadata_TYPE_UNSPECIFIED
}
func (m *VariantSetMetadata) GetNumber() string {
if m != nil {
return m.Number
}
return ""
}
func (m *VariantSetMetadata) GetDescription() string {
if m != nil {
return m.Description
}
return ""
}
func (m *VariantSetMetadata) GetInfo() map[string]*google_protobuf3.ListValue {
if m != nil {
return m.Info
}
return nil
}
// A variant set is a collection of call sets and variants. It contains summary
// statistics of those contents. A variant set belongs to a dataset.
//
// For more genomics resource definitions, see [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
type VariantSet struct {
// The dataset to which this variant set belongs.
DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId" json:"dataset_id,omitempty"`
// The server-generated variant set ID, unique across all variant sets.
Id string `protobuf:"bytes,2,opt,name=id" json:"id,omitempty"`
// The reference set to which the variant set is mapped. The reference set
// describes the alignment provenance of the variant set, while the
// `referenceBounds` describe the shape of the actual variant data. The
// reference set's reference names are a superset of those found in the
// `referenceBounds`.
//
// For example, given a variant set that is mapped to the GRCh38 reference set
// and contains a single variant on reference 'X', `referenceBounds` would
// contain only an entry for 'X', while the associated reference set
// enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
ReferenceSetId string `protobuf:"bytes,6,opt,name=reference_set_id,json=referenceSetId" json:"reference_set_id,omitempty"`
// A list of all references used by the variants in a variant set
// with associated coordinate upper bounds for each one.
ReferenceBounds []*ReferenceBound `protobuf:"bytes,5,rep,name=reference_bounds,json=referenceBounds" json:"reference_bounds,omitempty"`
// The metadata associated with this variant set.
Metadata []*VariantSetMetadata `protobuf:"bytes,4,rep,name=metadata" json:"metadata,omitempty"`
// User-specified, mutable name.
Name string `protobuf:"bytes,7,opt,name=name" json:"name,omitempty"`
// A textual description of this variant set.
Description string `protobuf:"bytes,8,opt,name=description" json:"description,omitempty"`
}
func (m *VariantSet) Reset() { *m = VariantSet{} }
func (m *VariantSet) String() string { return proto.CompactTextString(m) }
func (*VariantSet) ProtoMessage() {}
func (*VariantSet) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{1} }
func (m *VariantSet) GetDatasetId() string {
if m != nil {
return m.DatasetId
}
return ""
}
func (m *VariantSet) GetId() string {
if m != nil {
return m.Id
}
return ""
}
func (m *VariantSet) GetReferenceSetId() string {
if m != nil {
return m.ReferenceSetId
}
return ""
}
func (m *VariantSet) GetReferenceBounds() []*ReferenceBound {
if m != nil {
return m.ReferenceBounds
}
return nil
}
func (m *VariantSet) GetMetadata() []*VariantSetMetadata {
if m != nil {
return m.Metadata
}
return nil
}
func (m *VariantSet) GetName() string {
if m != nil {
return m.Name
}
return ""
}
func (m *VariantSet) GetDescription() string {
if m != nil {
return m.Description
}
return ""
}
// A variant represents a change in DNA sequence relative to a reference
// sequence. For example, a variant could represent a SNP or an insertion.
// Variants belong to a variant set.
//
// For more genomics resource definitions, see [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Each of the calls on a variant represent a determination of genotype with
// respect to that variant. For example, a call might assign probability of 0.32
// to the occurrence of a SNP named rs1234 in a sample named NA12345. A call
// belongs to a call set, which contains related calls typically from one
// sample.
type Variant struct {
// The ID of the variant set this variant belongs to.
VariantSetId string `protobuf:"bytes,15,opt,name=variant_set_id,json=variantSetId" json:"variant_set_id,omitempty"`
// The server-generated variant ID, unique across all variants.
Id string `protobuf:"bytes,2,opt,name=id" json:"id,omitempty"`
// Names for the variant, for example a RefSNP ID.
Names []string `protobuf:"bytes,3,rep,name=names" json:"names,omitempty"`
// The date this variant was created, in milliseconds from the epoch.
Created int64 `protobuf:"varint,12,opt,name=created" json:"created,omitempty"`
// The reference on which this variant occurs.
// (such as `chr20` or `X`)
ReferenceName string `protobuf:"bytes,14,opt,name=reference_name,json=referenceName" json:"reference_name,omitempty"`
// The position at which this variant occurs (0-based).
// This corresponds to the first base of the string of reference bases.
Start int64 `protobuf:"varint,16,opt,name=start" json:"start,omitempty"`
// The end position (0-based) of this variant. This corresponds to the first
// base after the last base in the reference allele. So, the length of
// the reference allele is (end - start). This is useful for variants
// that don't explicitly give alternate bases, for example large deletions.
End int64 `protobuf:"varint,13,opt,name=end" json:"end,omitempty"`
// The reference bases for this variant. They start at the given
// position.
ReferenceBases string `protobuf:"bytes,6,opt,name=reference_bases,json=referenceBases" json:"reference_bases,omitempty"`
// The bases that appear instead of the reference bases.
AlternateBases []string `protobuf:"bytes,7,rep,name=alternate_bases,json=alternateBases" json:"alternate_bases,omitempty"`
// A measure of how likely this variant is to be real.
// A higher value is better.
Quality float64 `protobuf:"fixed64,8,opt,name=quality" json:"quality,omitempty"`
// A list of filters (normally quality filters) this variant has failed.
// `PASS` indicates this variant has passed all filters.
Filter []string `protobuf:"bytes,9,rep,name=filter" json:"filter,omitempty"`
// A map of additional variant information. This must be of the form
// map<string, string[]> (string key mapping to a list of string values).
Info map[string]*google_protobuf3.ListValue `protobuf:"bytes,10,rep,name=info" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
// The variant calls for this particular variant. Each one represents the
// determination of genotype with respect to this variant.
Calls []*VariantCall `protobuf:"bytes,11,rep,name=calls" json:"calls,omitempty"`
}
func (m *Variant) Reset() { *m = Variant{} }
func (m *Variant) String() string { return proto.CompactTextString(m) }
func (*Variant) ProtoMessage() {}
func (*Variant) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{2} }
func (m *Variant) GetVariantSetId() string {
if m != nil {
return m.VariantSetId
}
return ""
}
func (m *Variant) GetId() string {
if m != nil {
return m.Id
}
return ""
}
func (m *Variant) GetNames() []string {
if m != nil {
return m.Names
}
return nil
}
func (m *Variant) GetCreated() int64 {
if m != nil {
return m.Created
}
return 0
}
func (m *Variant) GetReferenceName() string {
if m != nil {
return m.ReferenceName
}
return ""
}
func (m *Variant) GetStart() int64 {
if m != nil {
return m.Start
}
return 0
}
func (m *Variant) GetEnd() int64 {
if m != nil {
return m.End
}
return 0
}
func (m *Variant) GetReferenceBases() string {
if m != nil {
return m.ReferenceBases
}
return ""
}
func (m *Variant) GetAlternateBases() []string {
if m != nil {
return m.AlternateBases
}
return nil
}
func (m *Variant) GetQuality() float64 {
if m != nil {
return m.Quality
}
return 0
}
func (m *Variant) GetFilter() []string {
if m != nil {
return m.Filter
}
return nil
}
func (m *Variant) GetInfo() map[string]*google_protobuf3.ListValue {
if m != nil {
return m.Info
}
return nil
}
func (m *Variant) GetCalls() []*VariantCall {
if m != nil {
return m.Calls
}
return nil
}
// A call represents the determination of genotype with respect to a particular
// variant. It may include associated information such as quality and phasing.
// For example, a call might assign a probability of 0.32 to the occurrence of
// a SNP named rs1234 in a call set with the name NA12345.
type VariantCall struct {
// The ID of the call set this variant call belongs to.
CallSetId string `protobuf:"bytes,8,opt,name=call_set_id,json=callSetId" json:"call_set_id,omitempty"`
// The name of the call set this variant call belongs to.
CallSetName string `protobuf:"bytes,9,opt,name=call_set_name,json=callSetName" json:"call_set_name,omitempty"`
// The genotype of this variant call. Each value represents either the value
// of the `referenceBases` field or a 1-based index into
// `alternateBases`. If a variant had a `referenceBases`
// value of `T` and an `alternateBases`
// value of `["A", "C"]`, and the `genotype` was
// `[2, 1]`, that would mean the call
// represented the heterozygous value `CA` for this variant.
// If the `genotype` was instead `[0, 1]`, the
// represented value would be `TA`. Ordering of the
// genotype values is important if the `phaseset` is present.
// If a genotype is not called (that is, a `.` is present in the
// GT string) -1 is returned.
Genotype []int32 `protobuf:"varint,7,rep,packed,name=genotype" json:"genotype,omitempty"`
// If this field is present, this variant call's genotype ordering implies
// the phase of the bases and is consistent with any other variant calls in
// the same reference sequence which have the same phaseset value.
// When importing data from VCF, if the genotype data was phased but no
// phase set was specified this field will be set to `*`.
Phaseset string `protobuf:"bytes,5,opt,name=phaseset" json:"phaseset,omitempty"`
// The genotype likelihoods for this variant call. Each array entry
// represents how likely a specific genotype is for this call. The value
// ordering is defined by the GL tag in the VCF spec.
// If Phred-scaled genotype likelihood scores (PL) are available and
// log10(P) genotype likelihood scores (GL) are not, PL scores are converted
// to GL scores. If both are available, PL scores are stored in `info`.
GenotypeLikelihood []float64 `protobuf:"fixed64,6,rep,packed,name=genotype_likelihood,json=genotypeLikelihood" json:"genotype_likelihood,omitempty"`
// A map of additional variant call information. This must be of the form
// map<string, string[]> (string key mapping to a list of string values).
Info map[string]*google_protobuf3.ListValue `protobuf:"bytes,2,rep,name=info" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
}
func (m *VariantCall) Reset() { *m = VariantCall{} }
func (m *VariantCall) String() string { return proto.CompactTextString(m) }
func (*VariantCall) ProtoMessage() {}
func (*VariantCall) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{3} }
func (m *VariantCall) GetCallSetId() string {
if m != nil {
return m.CallSetId
}
return ""
}
func (m *VariantCall) GetCallSetName() string {
if m != nil {
return m.CallSetName
}
return ""
}
func (m *VariantCall) GetGenotype() []int32 {
if m != nil {
return m.Genotype
}
return nil
}
func (m *VariantCall) GetPhaseset() string {
if m != nil {
return m.Phaseset
}
return ""
}
func (m *VariantCall) GetGenotypeLikelihood() []float64 {
if m != nil {
return m.GenotypeLikelihood
}
return nil
}
func (m *VariantCall) GetInfo() map[string]*google_protobuf3.ListValue {
if m != nil {
return m.Info
}
return nil
}
// A call set is a collection of variant calls, typically for one sample. It
// belongs to a variant set.
//
// For more genomics resource definitions, see [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
type CallSet struct {
// The server-generated call set ID, unique across all call sets.
Id string `protobuf:"bytes,1,opt,name=id" json:"id,omitempty"`
// The call set name.
Name string `protobuf:"bytes,2,opt,name=name" json:"name,omitempty"`
// The sample ID this call set corresponds to.
SampleId string `protobuf:"bytes,7,opt,name=sample_id,json=sampleId" json:"sample_id,omitempty"`
// The IDs of the variant sets this call set belongs to. This field must
// have exactly length one, as a call set belongs to a single variant set.
// This field is repeated for compatibility with the
// [GA4GH 0.5.1
// API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
VariantSetIds []string `protobuf:"bytes,6,rep,name=variant_set_ids,json=variantSetIds" json:"variant_set_ids,omitempty"`
// The date this call set was created in milliseconds from the epoch.
Created int64 `protobuf:"varint,5,opt,name=created" json:"created,omitempty"`
// A map of additional call set information. This must be of the form
// map<string, string[]> (string key mapping to a list of string values).
Info map[string]*google_protobuf3.ListValue `protobuf:"bytes,4,rep,name=info" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"bytes,2,opt,name=value"`
}
func (m *CallSet) Reset() { *m = CallSet{} }
func (m *CallSet) String() string { return proto.CompactTextString(m) }
func (*CallSet) ProtoMessage() {}
func (*CallSet) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{4} }
func (m *CallSet) GetId() string {
if m != nil {
return m.Id
}
return ""
}
func (m *CallSet) GetName() string {
if m != nil {
return m.Name
}
return ""
}
func (m *CallSet) GetSampleId() string {
if m != nil {
return m.SampleId
}
return ""
}
func (m *CallSet) GetVariantSetIds() []string {
if m != nil {
return m.VariantSetIds
}
return nil
}
func (m *CallSet) GetCreated() int64 {
if m != nil {
return m.Created
}
return 0
}
func (m *CallSet) GetInfo() map[string]*google_protobuf3.ListValue {
if m != nil {
return m.Info
}
return nil
}
// ReferenceBound records an upper bound for the starting coordinate of
// variants in a particular reference.
type ReferenceBound struct {
// The name of the reference associated with this reference bound.
ReferenceName string `protobuf:"bytes,1,opt,name=reference_name,json=referenceName" json:"reference_name,omitempty"`
// An upper bound (inclusive) on the starting coordinate of any
// variant in the reference sequence.
UpperBound int64 `protobuf:"varint,2,opt,name=upper_bound,json=upperBound" json:"upper_bound,omitempty"`
}
func (m *ReferenceBound) Reset() { *m = ReferenceBound{} }
func (m *ReferenceBound) String() string { return proto.CompactTextString(m) }
func (*ReferenceBound) ProtoMessage() {}
func (*ReferenceBound) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{5} }
func (m *ReferenceBound) GetReferenceName() string {
if m != nil {
return m.ReferenceName
}
return ""
}
func (m *ReferenceBound) GetUpperBound() int64 {
if m != nil {
return m.UpperBound
}
return 0
}
// The variant data import request.
type ImportVariantsRequest struct {
// Required. The variant set to which variant data should be imported.
VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId" json:"variant_set_id,omitempty"`
// A list of URIs referencing variant files in Google Cloud Storage. URIs can
// include wildcards [as described
// here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
// Note that recursive wildcards ('**') are not supported.
SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris" json:"source_uris,omitempty"`
// The format of the variant data being imported. If unspecified, defaults to
// to `VCF`.
Format ImportVariantsRequest_Format `protobuf:"varint,3,opt,name=format,enum=google.genomics.v1.ImportVariantsRequest_Format" json:"format,omitempty"`
// Convert reference names to the canonical representation.
// hg19 haploytypes (those reference names containing "_hap")
// are not modified in any way.
// All other reference names are modified according to the following rules:
// The reference name is capitalized.
// The "chr" prefix is dropped for all autosomes and sex chromsomes.
// For example "chr17" becomes "17" and "chrX" becomes "X".
// All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
NormalizeReferenceNames bool `protobuf:"varint,5,opt,name=normalize_reference_names,json=normalizeReferenceNames" json:"normalize_reference_names,omitempty"`
// A mapping between info field keys and the InfoMergeOperations to
// be performed on them. This is plumbed down to the MergeVariantRequests
// generated by the resulting import job.
InfoMergeConfig map[string]InfoMergeOperation `protobuf:"bytes,6,rep,name=info_merge_config,json=infoMergeConfig" json:"info_merge_config,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"varint,2,opt,name=value,enum=google.genomics.v1.InfoMergeOperation"`
}
func (m *ImportVariantsRequest) Reset() { *m = ImportVariantsRequest{} }
func (m *ImportVariantsRequest) String() string { return proto.CompactTextString(m) }
func (*ImportVariantsRequest) ProtoMessage() {}
func (*ImportVariantsRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{6} }
func (m *ImportVariantsRequest) GetVariantSetId() string {
if m != nil {
return m.VariantSetId
}
return ""
}
func (m *ImportVariantsRequest) GetSourceUris() []string {
if m != nil {
return m.SourceUris
}
return nil
}
func (m *ImportVariantsRequest) GetFormat() ImportVariantsRequest_Format {
if m != nil {
return m.Format
}
return ImportVariantsRequest_FORMAT_UNSPECIFIED
}
func (m *ImportVariantsRequest) GetNormalizeReferenceNames() bool {
if m != nil {
return m.NormalizeReferenceNames
}
return false
}
func (m *ImportVariantsRequest) GetInfoMergeConfig() map[string]InfoMergeOperation {
if m != nil {
return m.InfoMergeConfig
}
return nil
}
// The variant data import response.
type ImportVariantsResponse struct {
// IDs of the call sets created during the import.
CallSetIds []string `protobuf:"bytes,1,rep,name=call_set_ids,json=callSetIds" json:"call_set_ids,omitempty"`
}
func (m *ImportVariantsResponse) Reset() { *m = ImportVariantsResponse{} }
func (m *ImportVariantsResponse) String() string { return proto.CompactTextString(m) }
func (*ImportVariantsResponse) ProtoMessage() {}
func (*ImportVariantsResponse) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{7} }
func (m *ImportVariantsResponse) GetCallSetIds() []string {
if m != nil {
return m.CallSetIds
}
return nil
}
// The CreateVariantSet request
type CreateVariantSetRequest struct {
// Required. The variant set to be created. Must have a valid `datasetId`.
VariantSet *VariantSet `protobuf:"bytes,1,opt,name=variant_set,json=variantSet" json:"variant_set,omitempty"`
}
func (m *CreateVariantSetRequest) Reset() { *m = CreateVariantSetRequest{} }
func (m *CreateVariantSetRequest) String() string { return proto.CompactTextString(m) }
func (*CreateVariantSetRequest) ProtoMessage() {}
func (*CreateVariantSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{8} }
func (m *CreateVariantSetRequest) GetVariantSet() *VariantSet {
if m != nil {
return m.VariantSet
}
return nil
}
// The variant data export request.
type ExportVariantSetRequest struct {
// Required. The ID of the variant set that contains variant data which
// should be exported. The caller must have READ access to this variant set.
VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId" json:"variant_set_id,omitempty"`
// If provided, only variant call information from the specified call sets
// will be exported. By default all variant calls are exported.
CallSetIds []string `protobuf:"bytes,2,rep,name=call_set_ids,json=callSetIds" json:"call_set_ids,omitempty"`
// Required. The Google Cloud project ID that owns the destination
// BigQuery dataset. The caller must have WRITE access to this project. This
// project will also own the resulting export job.
ProjectId string `protobuf:"bytes,3,opt,name=project_id,json=projectId" json:"project_id,omitempty"`
// The format for the exported data.
Format ExportVariantSetRequest_Format `protobuf:"varint,4,opt,name=format,enum=google.genomics.v1.ExportVariantSetRequest_Format" json:"format,omitempty"`
// Required. The BigQuery dataset to export data to. This dataset must already
// exist. Note that this is distinct from the Genomics concept of "dataset".
BigqueryDataset string `protobuf:"bytes,5,opt,name=bigquery_dataset,json=bigqueryDataset" json:"bigquery_dataset,omitempty"`
// Required. The BigQuery table to export data to.
// If the table doesn't exist, it will be created. If it already exists, it
// will be overwritten.
BigqueryTable string `protobuf:"bytes,6,opt,name=bigquery_table,json=bigqueryTable" json:"bigquery_table,omitempty"`
}
func (m *ExportVariantSetRequest) Reset() { *m = ExportVariantSetRequest{} }
func (m *ExportVariantSetRequest) String() string { return proto.CompactTextString(m) }
func (*ExportVariantSetRequest) ProtoMessage() {}
func (*ExportVariantSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{9} }
func (m *ExportVariantSetRequest) GetVariantSetId() string {
if m != nil {
return m.VariantSetId
}
return ""
}
func (m *ExportVariantSetRequest) GetCallSetIds() []string {
if m != nil {
return m.CallSetIds
}
return nil
}
func (m *ExportVariantSetRequest) GetProjectId() string {
if m != nil {
return m.ProjectId
}
return ""
}
func (m *ExportVariantSetRequest) GetFormat() ExportVariantSetRequest_Format {
if m != nil {
return m.Format
}
return ExportVariantSetRequest_FORMAT_UNSPECIFIED
}
func (m *ExportVariantSetRequest) GetBigqueryDataset() string {
if m != nil {
return m.BigqueryDataset
}
return ""
}
func (m *ExportVariantSetRequest) GetBigqueryTable() string {
if m != nil {
return m.BigqueryTable
}
return ""
}
// The variant set request.
type GetVariantSetRequest struct {
// Required. The ID of the variant set.
VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId" json:"variant_set_id,omitempty"`
}
func (m *GetVariantSetRequest) Reset() { *m = GetVariantSetRequest{} }
func (m *GetVariantSetRequest) String() string { return proto.CompactTextString(m) }
func (*GetVariantSetRequest) ProtoMessage() {}
func (*GetVariantSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{10} }
func (m *GetVariantSetRequest) GetVariantSetId() string {
if m != nil {
return m.VariantSetId
}
return ""
}
// The search variant sets request.
type SearchVariantSetsRequest struct {
// Exactly one dataset ID must be provided here. Only variant sets which
// belong to this dataset will be returned.
DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds" json:"dataset_ids,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,2,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
// The maximum number of results to return in a single page. If unspecified,
// defaults to 1024.
PageSize int32 `protobuf:"varint,3,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
}
func (m *SearchVariantSetsRequest) Reset() { *m = SearchVariantSetsRequest{} }
func (m *SearchVariantSetsRequest) String() string { return proto.CompactTextString(m) }
func (*SearchVariantSetsRequest) ProtoMessage() {}
func (*SearchVariantSetsRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{11} }
func (m *SearchVariantSetsRequest) GetDatasetIds() []string {
if m != nil {
return m.DatasetIds
}
return nil
}
func (m *SearchVariantSetsRequest) GetPageToken() string {
if m != nil {
return m.PageToken
}
return ""
}
func (m *SearchVariantSetsRequest) GetPageSize() int32 {
if m != nil {
return m.PageSize
}
return 0
}
// The search variant sets response.
type SearchVariantSetsResponse struct {
// The variant sets belonging to the requested dataset.
VariantSets []*VariantSet `protobuf:"bytes,1,rep,name=variant_sets,json=variantSets" json:"variant_sets,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
}
func (m *SearchVariantSetsResponse) Reset() { *m = SearchVariantSetsResponse{} }
func (m *SearchVariantSetsResponse) String() string { return proto.CompactTextString(m) }
func (*SearchVariantSetsResponse) ProtoMessage() {}
func (*SearchVariantSetsResponse) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{12} }
func (m *SearchVariantSetsResponse) GetVariantSets() []*VariantSet {
if m != nil {
return m.VariantSets
}
return nil
}
func (m *SearchVariantSetsResponse) GetNextPageToken() string {
if m != nil {
return m.NextPageToken
}
return ""
}
// The delete variant set request.
type DeleteVariantSetRequest struct {
// The ID of the variant set to be deleted.
VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId" json:"variant_set_id,omitempty"`
}
func (m *DeleteVariantSetRequest) Reset() { *m = DeleteVariantSetRequest{} }
func (m *DeleteVariantSetRequest) String() string { return proto.CompactTextString(m) }
func (*DeleteVariantSetRequest) ProtoMessage() {}
func (*DeleteVariantSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{13} }
func (m *DeleteVariantSetRequest) GetVariantSetId() string {
if m != nil {
return m.VariantSetId
}
return ""
}
type UpdateVariantSetRequest struct {
// The ID of the variant to be updated (must already exist).
VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId" json:"variant_set_id,omitempty"`
// The new variant data. Only the variant_set.metadata will be considered
// for update.
VariantSet *VariantSet `protobuf:"bytes,2,opt,name=variant_set,json=variantSet" json:"variant_set,omitempty"`
// An optional mask specifying which fields to update. Supported fields:
//
// * [metadata][google.genomics.v1.VariantSet.metadata].
// * [name][google.genomics.v1.VariantSet.name].
// * [description][google.genomics.v1.VariantSet.description].
//
// Leaving `updateMask` unset is equivalent to specifying all mutable
// fields.
UpdateMask *google_protobuf2.FieldMask `protobuf:"bytes,5,opt,name=update_mask,json=updateMask" json:"update_mask,omitempty"`
}
func (m *UpdateVariantSetRequest) Reset() { *m = UpdateVariantSetRequest{} }
func (m *UpdateVariantSetRequest) String() string { return proto.CompactTextString(m) }
func (*UpdateVariantSetRequest) ProtoMessage() {}
func (*UpdateVariantSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{14} }
func (m *UpdateVariantSetRequest) GetVariantSetId() string {
if m != nil {
return m.VariantSetId
}
return ""
}
func (m *UpdateVariantSetRequest) GetVariantSet() *VariantSet {
if m != nil {
return m.VariantSet
}
return nil
}
func (m *UpdateVariantSetRequest) GetUpdateMask() *google_protobuf2.FieldMask {
if m != nil {
return m.UpdateMask
}
return nil
}
// The variant search request.
type SearchVariantsRequest struct {
// At most one variant set ID must be provided. Only variants from this
// variant set will be returned. If omitted, a call set id must be included in
// the request.
VariantSetIds []string `protobuf:"bytes,1,rep,name=variant_set_ids,json=variantSetIds" json:"variant_set_ids,omitempty"`
// Only return variants which have exactly this name.
VariantName string `protobuf:"bytes,2,opt,name=variant_name,json=variantName" json:"variant_name,omitempty"`
// Only return variant calls which belong to call sets with these ids.
// Leaving this blank returns all variant calls. If a variant has no
// calls belonging to any of these call sets, it won't be returned at all.
CallSetIds []string `protobuf:"bytes,3,rep,name=call_set_ids,json=callSetIds" json:"call_set_ids,omitempty"`
// Required. Only return variants in this reference sequence.
ReferenceName string `protobuf:"bytes,4,opt,name=reference_name,json=referenceName" json:"reference_name,omitempty"`
// The beginning of the window (0-based, inclusive) for which
// overlapping variants should be returned. If unspecified, defaults to 0.
Start int64 `protobuf:"varint,5,opt,name=start" json:"start,omitempty"`
// The end of the window, 0-based exclusive. If unspecified or 0, defaults to
// the length of the reference.
End int64 `protobuf:"varint,6,opt,name=end" json:"end,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
// The maximum number of variants to return in a single page. If unspecified,
// defaults to 5000. The maximum value is 10000.
PageSize int32 `protobuf:"varint,8,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
// The maximum number of calls to return in a single page. Note that this
// limit may be exceeded in the event that a matching variant contains more
// calls than the requested maximum. If unspecified, defaults to 5000. The
// maximum value is 10000.
MaxCalls int32 `protobuf:"varint,9,opt,name=max_calls,json=maxCalls" json:"max_calls,omitempty"`
}
func (m *SearchVariantsRequest) Reset() { *m = SearchVariantsRequest{} }
func (m *SearchVariantsRequest) String() string { return proto.CompactTextString(m) }
func (*SearchVariantsRequest) ProtoMessage() {}
func (*SearchVariantsRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{15} }
func (m *SearchVariantsRequest) GetVariantSetIds() []string {
if m != nil {
return m.VariantSetIds
}
return nil
}
func (m *SearchVariantsRequest) GetVariantName() string {
if m != nil {
return m.VariantName
}
return ""
}
func (m *SearchVariantsRequest) GetCallSetIds() []string {
if m != nil {
return m.CallSetIds
}
return nil
}
func (m *SearchVariantsRequest) GetReferenceName() string {
if m != nil {
return m.ReferenceName
}
return ""
}
func (m *SearchVariantsRequest) GetStart() int64 {
if m != nil {
return m.Start
}
return 0
}
func (m *SearchVariantsRequest) GetEnd() int64 {
if m != nil {
return m.End
}
return 0
}
func (m *SearchVariantsRequest) GetPageToken() string {
if m != nil {
return m.PageToken
}
return ""
}
func (m *SearchVariantsRequest) GetPageSize() int32 {
if m != nil {
return m.PageSize
}
return 0
}
func (m *SearchVariantsRequest) GetMaxCalls() int32 {
if m != nil {
return m.MaxCalls
}
return 0
}
// The variant search response.
type SearchVariantsResponse struct {
// The list of matching Variants.
Variants []*Variant `protobuf:"bytes,1,rep,name=variants" json:"variants,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
}
func (m *SearchVariantsResponse) Reset() { *m = SearchVariantsResponse{} }
func (m *SearchVariantsResponse) String() string { return proto.CompactTextString(m) }
func (*SearchVariantsResponse) ProtoMessage() {}
func (*SearchVariantsResponse) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{16} }
func (m *SearchVariantsResponse) GetVariants() []*Variant {
if m != nil {
return m.Variants
}
return nil
}
func (m *SearchVariantsResponse) GetNextPageToken() string {
if m != nil {
return m.NextPageToken
}
return ""
}
type CreateVariantRequest struct {
// The variant to be created.
Variant *Variant `protobuf:"bytes,1,opt,name=variant" json:"variant,omitempty"`
}
func (m *CreateVariantRequest) Reset() { *m = CreateVariantRequest{} }
func (m *CreateVariantRequest) String() string { return proto.CompactTextString(m) }
func (*CreateVariantRequest) ProtoMessage() {}
func (*CreateVariantRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{17} }
func (m *CreateVariantRequest) GetVariant() *Variant {
if m != nil {
return m.Variant
}
return nil
}
type UpdateVariantRequest struct {
// The ID of the variant to be updated.
VariantId string `protobuf:"bytes,1,opt,name=variant_id,json=variantId" json:"variant_id,omitempty"`
// The new variant data.
Variant *Variant `protobuf:"bytes,2,opt,name=variant" json:"variant,omitempty"`
// An optional mask specifying which fields to update. At this time, mutable
// fields are [names][google.genomics.v1.Variant.names] and
// [info][google.genomics.v1.Variant.info]. Acceptable values are "names" and
// "info". If unspecified, all mutable fields will be updated.
UpdateMask *google_protobuf2.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask" json:"update_mask,omitempty"`
}
func (m *UpdateVariantRequest) Reset() { *m = UpdateVariantRequest{} }
func (m *UpdateVariantRequest) String() string { return proto.CompactTextString(m) }
func (*UpdateVariantRequest) ProtoMessage() {}
func (*UpdateVariantRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{18} }
func (m *UpdateVariantRequest) GetVariantId() string {
if m != nil {
return m.VariantId
}
return ""
}
func (m *UpdateVariantRequest) GetVariant() *Variant {
if m != nil {
return m.Variant
}
return nil
}
func (m *UpdateVariantRequest) GetUpdateMask() *google_protobuf2.FieldMask {
if m != nil {
return m.UpdateMask
}
return nil
}
type DeleteVariantRequest struct {
// The ID of the variant to be deleted.
VariantId string `protobuf:"bytes,1,opt,name=variant_id,json=variantId" json:"variant_id,omitempty"`
}
func (m *DeleteVariantRequest) Reset() { *m = DeleteVariantRequest{} }
func (m *DeleteVariantRequest) String() string { return proto.CompactTextString(m) }
func (*DeleteVariantRequest) ProtoMessage() {}
func (*DeleteVariantRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{19} }
func (m *DeleteVariantRequest) GetVariantId() string {
if m != nil {
return m.VariantId
}
return ""
}
type GetVariantRequest struct {
// The ID of the variant.
VariantId string `protobuf:"bytes,1,opt,name=variant_id,json=variantId" json:"variant_id,omitempty"`
}
func (m *GetVariantRequest) Reset() { *m = GetVariantRequest{} }
func (m *GetVariantRequest) String() string { return proto.CompactTextString(m) }
func (*GetVariantRequest) ProtoMessage() {}
func (*GetVariantRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{20} }
func (m *GetVariantRequest) GetVariantId() string {
if m != nil {
return m.VariantId
}
return ""
}
type MergeVariantsRequest struct {
// The destination variant set.
VariantSetId string `protobuf:"bytes,1,opt,name=variant_set_id,json=variantSetId" json:"variant_set_id,omitempty"`
// The variants to be merged with existing variants.
Variants []*Variant `protobuf:"bytes,2,rep,name=variants" json:"variants,omitempty"`
// A mapping between info field keys and the InfoMergeOperations to
// be performed on them.
InfoMergeConfig map[string]InfoMergeOperation `protobuf:"bytes,3,rep,name=info_merge_config,json=infoMergeConfig" json:"info_merge_config,omitempty" protobuf_key:"bytes,1,opt,name=key" protobuf_val:"varint,2,opt,name=value,enum=google.genomics.v1.InfoMergeOperation"`
}
func (m *MergeVariantsRequest) Reset() { *m = MergeVariantsRequest{} }
func (m *MergeVariantsRequest) String() string { return proto.CompactTextString(m) }
func (*MergeVariantsRequest) ProtoMessage() {}
func (*MergeVariantsRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{21} }
func (m *MergeVariantsRequest) GetVariantSetId() string {
if m != nil {
return m.VariantSetId
}
return ""
}
func (m *MergeVariantsRequest) GetVariants() []*Variant {
if m != nil {
return m.Variants
}
return nil
}
func (m *MergeVariantsRequest) GetInfoMergeConfig() map[string]InfoMergeOperation {
if m != nil {
return m.InfoMergeConfig
}
return nil
}
// The call set search request.
type SearchCallSetsRequest struct {
// Restrict the query to call sets within the given variant sets. At least one
// ID must be provided.
VariantSetIds []string `protobuf:"bytes,1,rep,name=variant_set_ids,json=variantSetIds" json:"variant_set_ids,omitempty"`
// Only return call sets for which a substring of the name matches this
// string.
Name string `protobuf:"bytes,2,opt,name=name" json:"name,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken" json:"page_token,omitempty"`
// The maximum number of results to return in a single page. If unspecified,
// defaults to 1024.
PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize" json:"page_size,omitempty"`
}
func (m *SearchCallSetsRequest) Reset() { *m = SearchCallSetsRequest{} }
func (m *SearchCallSetsRequest) String() string { return proto.CompactTextString(m) }
func (*SearchCallSetsRequest) ProtoMessage() {}
func (*SearchCallSetsRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{22} }
func (m *SearchCallSetsRequest) GetVariantSetIds() []string {
if m != nil {
return m.VariantSetIds
}
return nil
}
func (m *SearchCallSetsRequest) GetName() string {
if m != nil {
return m.Name
}
return ""
}
func (m *SearchCallSetsRequest) GetPageToken() string {
if m != nil {
return m.PageToken
}
return ""
}
func (m *SearchCallSetsRequest) GetPageSize() int32 {
if m != nil {
return m.PageSize
}
return 0
}
// The call set search response.
type SearchCallSetsResponse struct {
// The list of matching call sets.
CallSets []*CallSet `protobuf:"bytes,1,rep,name=call_sets,json=callSets" json:"call_sets,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken" json:"next_page_token,omitempty"`
}
func (m *SearchCallSetsResponse) Reset() { *m = SearchCallSetsResponse{} }
func (m *SearchCallSetsResponse) String() string { return proto.CompactTextString(m) }
func (*SearchCallSetsResponse) ProtoMessage() {}
func (*SearchCallSetsResponse) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{23} }
func (m *SearchCallSetsResponse) GetCallSets() []*CallSet {
if m != nil {
return m.CallSets
}
return nil
}
func (m *SearchCallSetsResponse) GetNextPageToken() string {
if m != nil {
return m.NextPageToken
}
return ""
}
type CreateCallSetRequest struct {
// The call set to be created.
CallSet *CallSet `protobuf:"bytes,1,opt,name=call_set,json=callSet" json:"call_set,omitempty"`
}
func (m *CreateCallSetRequest) Reset() { *m = CreateCallSetRequest{} }
func (m *CreateCallSetRequest) String() string { return proto.CompactTextString(m) }
func (*CreateCallSetRequest) ProtoMessage() {}
func (*CreateCallSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{24} }
func (m *CreateCallSetRequest) GetCallSet() *CallSet {
if m != nil {
return m.CallSet
}
return nil
}
type UpdateCallSetRequest struct {
// The ID of the call set to be updated.
CallSetId string `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId" json:"call_set_id,omitempty"`
// The new call set data.
CallSet *CallSet `protobuf:"bytes,2,opt,name=call_set,json=callSet" json:"call_set,omitempty"`
// An optional mask specifying which fields to update. At this time, the only
// mutable field is [name][google.genomics.v1.CallSet.name]. The only
// acceptable value is "name". If unspecified, all mutable fields will be
// updated.
UpdateMask *google_protobuf2.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask" json:"update_mask,omitempty"`
}
func (m *UpdateCallSetRequest) Reset() { *m = UpdateCallSetRequest{} }
func (m *UpdateCallSetRequest) String() string { return proto.CompactTextString(m) }
func (*UpdateCallSetRequest) ProtoMessage() {}
func (*UpdateCallSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{25} }
func (m *UpdateCallSetRequest) GetCallSetId() string {
if m != nil {
return m.CallSetId
}
return ""
}
func (m *UpdateCallSetRequest) GetCallSet() *CallSet {
if m != nil {
return m.CallSet
}
return nil
}
func (m *UpdateCallSetRequest) GetUpdateMask() *google_protobuf2.FieldMask {
if m != nil {
return m.UpdateMask
}
return nil
}
type DeleteCallSetRequest struct {
// The ID of the call set to be deleted.
CallSetId string `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId" json:"call_set_id,omitempty"`
}
func (m *DeleteCallSetRequest) Reset() { *m = DeleteCallSetRequest{} }
func (m *DeleteCallSetRequest) String() string { return proto.CompactTextString(m) }
func (*DeleteCallSetRequest) ProtoMessage() {}
func (*DeleteCallSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{26} }
func (m *DeleteCallSetRequest) GetCallSetId() string {
if m != nil {
return m.CallSetId
}
return ""
}
type GetCallSetRequest struct {
// The ID of the call set.
CallSetId string `protobuf:"bytes,1,opt,name=call_set_id,json=callSetId" json:"call_set_id,omitempty"`
}
func (m *GetCallSetRequest) Reset() { *m = GetCallSetRequest{} }
func (m *GetCallSetRequest) String() string { return proto.CompactTextString(m) }
func (*GetCallSetRequest) ProtoMessage() {}
func (*GetCallSetRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{27} }
func (m *GetCallSetRequest) GetCallSetId() string {
if m != nil {
return m.CallSetId
}
return ""
}
// The stream variants request.
type StreamVariantsRequest struct {
// The Google Developers Console project ID or number which will be billed
// for this access. The caller must have WRITE access to this project.
// Required.
ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId" json:"project_id,omitempty"`
// The variant set ID from which to stream variants.
VariantSetId string `protobuf:"bytes,2,opt,name=variant_set_id,json=variantSetId" json:"variant_set_id,omitempty"`
// Only return variant calls which belong to call sets with these IDs.
// Leaving this blank returns all variant calls.
CallSetIds []string `protobuf:"bytes,3,rep,name=call_set_ids,json=callSetIds" json:"call_set_ids,omitempty"`
// Required. Only return variants in this reference sequence.
ReferenceName string `protobuf:"bytes,4,opt,name=reference_name,json=referenceName" json:"reference_name,omitempty"`
// The beginning of the window (0-based, inclusive) for which
// overlapping variants should be returned.
Start int64 `protobuf:"varint,5,opt,name=start" json:"start,omitempty"`
// The end of the window (0-based, exclusive) for which overlapping
// variants should be returned.
End int64 `protobuf:"varint,6,opt,name=end" json:"end,omitempty"`
}
func (m *StreamVariantsRequest) Reset() { *m = StreamVariantsRequest{} }
func (m *StreamVariantsRequest) String() string { return proto.CompactTextString(m) }
func (*StreamVariantsRequest) ProtoMessage() {}
func (*StreamVariantsRequest) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{28} }
func (m *StreamVariantsRequest) GetProjectId() string {
if m != nil {
return m.ProjectId
}
return ""
}
func (m *StreamVariantsRequest) GetVariantSetId() string {
if m != nil {
return m.VariantSetId
}
return ""
}
func (m *StreamVariantsRequest) GetCallSetIds() []string {
if m != nil {
return m.CallSetIds
}
return nil
}
func (m *StreamVariantsRequest) GetReferenceName() string {
if m != nil {
return m.ReferenceName
}
return ""
}
func (m *StreamVariantsRequest) GetStart() int64 {
if m != nil {
return m.Start
}
return 0
}
func (m *StreamVariantsRequest) GetEnd() int64 {
if m != nil {
return m.End
}
return 0
}
type StreamVariantsResponse struct {
Variants []*Variant `protobuf:"bytes,1,rep,name=variants" json:"variants,omitempty"`
}
func (m *StreamVariantsResponse) Reset() { *m = StreamVariantsResponse{} }
func (m *StreamVariantsResponse) String() string { return proto.CompactTextString(m) }
func (*StreamVariantsResponse) ProtoMessage() {}
func (*StreamVariantsResponse) Descriptor() ([]byte, []int) { return fileDescriptor11, []int{29} }
func (m *StreamVariantsResponse) GetVariants() []*Variant {
if m != nil {
return m.Variants
}
return nil
}
func init() {
proto.RegisterType((*VariantSetMetadata)(nil), "google.genomics.v1.VariantSetMetadata")
proto.RegisterType((*VariantSet)(nil), "google.genomics.v1.VariantSet")
proto.RegisterType((*Variant)(nil), "google.genomics.v1.Variant")
proto.RegisterType((*VariantCall)(nil), "google.genomics.v1.VariantCall")
proto.RegisterType((*CallSet)(nil), "google.genomics.v1.CallSet")
proto.RegisterType((*ReferenceBound)(nil), "google.genomics.v1.ReferenceBound")
proto.RegisterType((*ImportVariantsRequest)(nil), "google.genomics.v1.ImportVariantsRequest")
proto.RegisterType((*ImportVariantsResponse)(nil), "google.genomics.v1.ImportVariantsResponse")
proto.RegisterType((*CreateVariantSetRequest)(nil), "google.genomics.v1.CreateVariantSetRequest")
proto.RegisterType((*ExportVariantSetRequest)(nil), "google.genomics.v1.ExportVariantSetRequest")
proto.RegisterType((*GetVariantSetRequest)(nil), "google.genomics.v1.GetVariantSetRequest")
proto.RegisterType((*SearchVariantSetsRequest)(nil), "google.genomics.v1.SearchVariantSetsRequest")
proto.RegisterType((*SearchVariantSetsResponse)(nil), "google.genomics.v1.SearchVariantSetsResponse")
proto.RegisterType((*DeleteVariantSetRequest)(nil), "google.genomics.v1.DeleteVariantSetRequest")
proto.RegisterType((*UpdateVariantSetRequest)(nil), "google.genomics.v1.UpdateVariantSetRequest")
proto.RegisterType((*SearchVariantsRequest)(nil), "google.genomics.v1.SearchVariantsRequest")
proto.RegisterType((*SearchVariantsResponse)(nil), "google.genomics.v1.SearchVariantsResponse")
proto.RegisterType((*CreateVariantRequest)(nil), "google.genomics.v1.CreateVariantRequest")
proto.RegisterType((*UpdateVariantRequest)(nil), "google.genomics.v1.UpdateVariantRequest")
proto.RegisterType((*DeleteVariantRequest)(nil), "google.genomics.v1.DeleteVariantRequest")
proto.RegisterType((*GetVariantRequest)(nil), "google.genomics.v1.GetVariantRequest")
proto.RegisterType((*MergeVariantsRequest)(nil), "google.genomics.v1.MergeVariantsRequest")
proto.RegisterType((*SearchCallSetsRequest)(nil), "google.genomics.v1.SearchCallSetsRequest")
proto.RegisterType((*SearchCallSetsResponse)(nil), "google.genomics.v1.SearchCallSetsResponse")
proto.RegisterType((*CreateCallSetRequest)(nil), "google.genomics.v1.CreateCallSetRequest")
proto.RegisterType((*UpdateCallSetRequest)(nil), "google.genomics.v1.UpdateCallSetRequest")
proto.RegisterType((*DeleteCallSetRequest)(nil), "google.genomics.v1.DeleteCallSetRequest")
proto.RegisterType((*GetCallSetRequest)(nil), "google.genomics.v1.GetCallSetRequest")
proto.RegisterType((*StreamVariantsRequest)(nil), "google.genomics.v1.StreamVariantsRequest")
proto.RegisterType((*StreamVariantsResponse)(nil), "google.genomics.v1.StreamVariantsResponse")
proto.RegisterEnum("google.genomics.v1.InfoMergeOperation", InfoMergeOperation_name, InfoMergeOperation_value)
proto.RegisterEnum("google.genomics.v1.VariantSetMetadata_Type", VariantSetMetadata_Type_name, VariantSetMetadata_Type_value)
proto.RegisterEnum("google.genomics.v1.ImportVariantsRequest_Format", ImportVariantsRequest_Format_name, ImportVariantsRequest_Format_value)
proto.RegisterEnum("google.genomics.v1.ExportVariantSetRequest_Format", ExportVariantSetRequest_Format_name, ExportVariantSetRequest_Format_value)
}
// Reference imports to suppress errors if they are not otherwise used.
var _ context.Context
var _ grpc.ClientConn
// This is a compile-time assertion to ensure that this generated file
// is compatible with the grpc package it is being compiled against.
const _ = grpc.SupportPackageIsVersion4
// Client API for StreamingVariantService service
type StreamingVariantServiceClient interface {
// Returns a stream of all the variants matching the search request, ordered
// by reference name, position, and ID.
StreamVariants(ctx context.Context, in *StreamVariantsRequest, opts ...grpc.CallOption) (StreamingVariantService_StreamVariantsClient, error)
}
type streamingVariantServiceClient struct {
cc *grpc.ClientConn
}
func NewStreamingVariantServiceClient(cc *grpc.ClientConn) StreamingVariantServiceClient {
return &streamingVariantServiceClient{cc}
}
func (c *streamingVariantServiceClient) StreamVariants(ctx context.Context, in *StreamVariantsRequest, opts ...grpc.CallOption) (StreamingVariantService_StreamVariantsClient, error) {
stream, err := grpc.NewClientStream(ctx, &_StreamingVariantService_serviceDesc.Streams[0], c.cc, "/google.genomics.v1.StreamingVariantService/StreamVariants", opts...)
if err != nil {
return nil, err
}
x := &streamingVariantServiceStreamVariantsClient{stream}
if err := x.ClientStream.SendMsg(in); err != nil {
return nil, err
}
if err := x.ClientStream.CloseSend(); err != nil {
return nil, err
}
return x, nil
}
type StreamingVariantService_StreamVariantsClient interface {
Recv() (*StreamVariantsResponse, error)
grpc.ClientStream
}
type streamingVariantServiceStreamVariantsClient struct {
grpc.ClientStream
}
func (x *streamingVariantServiceStreamVariantsClient) Recv() (*StreamVariantsResponse, error) {
m := new(StreamVariantsResponse)
if err := x.ClientStream.RecvMsg(m); err != nil {
return nil, err
}
return m, nil
}
// Server API for StreamingVariantService service
type StreamingVariantServiceServer interface {
// Returns a stream of all the variants matching the search request, ordered
// by reference name, position, and ID.
StreamVariants(*StreamVariantsRequest, StreamingVariantService_StreamVariantsServer) error
}
func RegisterStreamingVariantServiceServer(s *grpc.Server, srv StreamingVariantServiceServer) {
s.RegisterService(&_StreamingVariantService_serviceDesc, srv)
}
func _StreamingVariantService_StreamVariants_Handler(srv interface{}, stream grpc.ServerStream) error {
m := new(StreamVariantsRequest)
if err := stream.RecvMsg(m); err != nil {
return err
}
return srv.(StreamingVariantServiceServer).StreamVariants(m, &streamingVariantServiceStreamVariantsServer{stream})
}
type StreamingVariantService_StreamVariantsServer interface {
Send(*StreamVariantsResponse) error
grpc.ServerStream
}
type streamingVariantServiceStreamVariantsServer struct {
grpc.ServerStream
}
func (x *streamingVariantServiceStreamVariantsServer) Send(m *StreamVariantsResponse) error {
return x.ServerStream.SendMsg(m)
}
var _StreamingVariantService_serviceDesc = grpc.ServiceDesc{
ServiceName: "google.genomics.v1.StreamingVariantService",
HandlerType: (*StreamingVariantServiceServer)(nil),
Methods: []grpc.MethodDesc{},
Streams: []grpc.StreamDesc{
{
StreamName: "StreamVariants",
Handler: _StreamingVariantService_StreamVariants_Handler,
ServerStreams: true,
},
},
Metadata: "google.golang.org/genproto/googleapis/genomics/v1/variants.proto",
}
// Client API for VariantServiceV1 service
type VariantServiceV1Client interface {
// Creates variant data by asynchronously importing the provided information.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// The variants for import will be merged with any existing variant that
// matches its reference sequence, start, end, reference bases, and
// alternative bases. If no such variant exists, a new one will be created.
//
// When variants are merged, the call information from the new variant
// is added to the existing variant, and Variant info fields are merged
// as specified in
// [infoMergeConfig][google.genomics.v1.ImportVariantsRequest.info_merge_config].
// As a special case, for single-sample VCF files, QUAL and FILTER fields will
// be moved to the call level; these are sometimes interpreted in a
// call-specific context.
// Imported VCF headers are appended to the metadata already in a variant set.
ImportVariants(ctx context.Context, in *ImportVariantsRequest, opts ...grpc.CallOption) (*google_longrunning.Operation, error)
// Creates a new variant set.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// The provided variant set must have a valid `datasetId` set - all other
// fields are optional. Note that the `id` field will be ignored, as this is
// assigned by the server.
CreateVariantSet(ctx context.Context, in *CreateVariantSetRequest, opts ...grpc.CallOption) (*VariantSet, error)
// Exports variant set data to an external destination.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
ExportVariantSet(ctx context.Context, in *ExportVariantSetRequest, opts ...grpc.CallOption) (*google_longrunning.Operation, error)
// Gets a variant set by ID.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
GetVariantSet(ctx context.Context, in *GetVariantSetRequest, opts ...grpc.CallOption) (*VariantSet, error)
// Returns a list of all variant sets matching search criteria.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.searchVariantSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L49).
SearchVariantSets(ctx context.Context, in *SearchVariantSetsRequest, opts ...grpc.CallOption) (*SearchVariantSetsResponse, error)
// Deletes a variant set including all variants, call sets, and calls within.
// This is not reversible.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
DeleteVariantSet(ctx context.Context, in *DeleteVariantSetRequest, opts ...grpc.CallOption) (*google_protobuf1.Empty, error)
// Updates a variant set using patch semantics.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
UpdateVariantSet(ctx context.Context, in *UpdateVariantSetRequest, opts ...grpc.CallOption) (*VariantSet, error)
// Gets a list of variants matching the criteria.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L126).
SearchVariants(ctx context.Context, in *SearchVariantsRequest, opts ...grpc.CallOption) (*SearchVariantsResponse, error)
// Creates a new variant.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
CreateVariant(ctx context.Context, in *CreateVariantRequest, opts ...grpc.CallOption) (*Variant, error)
// Updates a variant.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// This method supports patch semantics. Returns the modified variant without
// its calls.
UpdateVariant(ctx context.Context, in *UpdateVariantRequest, opts ...grpc.CallOption) (*Variant, error)
// Deletes a variant.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
DeleteVariant(ctx context.Context, in *DeleteVariantRequest, opts ...grpc.CallOption) (*google_protobuf1.Empty, error)
// Gets a variant by ID.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
GetVariant(ctx context.Context, in *GetVariantRequest, opts ...grpc.CallOption) (*Variant, error)
// Merges the given variants with existing variants.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Each variant will be
// merged with an existing variant that matches its reference sequence,
// start, end, reference bases, and alternative bases. If no such variant
// exists, a new one will be created.
//
// When variants are merged, the call information from the new variant
// is added to the existing variant. Variant info fields are merged as
// specified in the
// [infoMergeConfig][google.genomics.v1.MergeVariantsRequest.info_merge_config]
// field of the MergeVariantsRequest.
//
// Please exercise caution when using this method! It is easy to introduce
// mistakes in existing variants and difficult to back out of them. For
// example,
// suppose you were trying to merge a new variant with an existing one and
// both
// variants contain calls that belong to callsets with the same callset ID.
//
// // Existing variant - irrelevant fields trimmed for clarity
// {
// "variantSetId": "10473108253681171589",
// "referenceName": "1",
// "start": "10582",
// "referenceBases": "G",
// "alternateBases": [
// "A"
// ],
// "calls": [
// {
// "callSetId": "10473108253681171589-0",
// "callSetName": "CALLSET0",
// "genotype": [
// 0,
// 1
// ],
// }
// ]
// }
//
// // New variant with conflicting call information
// {
// "variantSetId": "10473108253681171589",
// "referenceName": "1",
// "start": "10582",
// "referenceBases": "G",
// "alternateBases": [
// "A"
// ],
// "calls": [
// {
// "callSetId": "10473108253681171589-0",
// "callSetName": "CALLSET0",
// "genotype": [
// 1,
// 1
// ],
// }
// ]
// }
//
// The resulting merged variant would overwrite the existing calls with those
// from the new variant:
//
// {
// "variantSetId": "10473108253681171589",
// "referenceName": "1",
// "start": "10582",
// "referenceBases": "G",
// "alternateBases": [
// "A"
// ],
// "calls": [
// {
// "callSetId": "10473108253681171589-0",
// "callSetName": "CALLSET0",
// "genotype": [
// 1,
// 1
// ],
// }
// ]
// }
//
// This may be the desired outcome, but it is up to the user to determine if
// if that is indeed the case.
MergeVariants(ctx context.Context, in *MergeVariantsRequest, opts ...grpc.CallOption) (*google_protobuf1.Empty, error)
// Gets a list of call sets matching the criteria.
//
// For the definitions of call sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178).
SearchCallSets(ctx context.Context, in *SearchCallSetsRequest, opts ...grpc.CallOption) (*SearchCallSetsResponse, error)
// Creates a new call set.
//
// For the definitions of call sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
CreateCallSet(ctx context.Context, in *CreateCallSetRequest, opts ...grpc.CallOption) (*CallSet, error)
// Updates a call set.
//
// For the definitions of call sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// This method supports patch semantics.
UpdateCallSet(ctx context.Context, in *UpdateCallSetRequest, opts ...grpc.CallOption) (*CallSet, error)
// Deletes a call set.
//
// For the definitions of call sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
DeleteCallSet(ctx context.Context, in *DeleteCallSetRequest, opts ...grpc.CallOption) (*google_protobuf1.Empty, error)
// Gets a call set by ID.
//
// For the definitions of call sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
GetCallSet(ctx context.Context, in *GetCallSetRequest, opts ...grpc.CallOption) (*CallSet, error)
}
type variantServiceV1Client struct {
cc *grpc.ClientConn
}
func NewVariantServiceV1Client(cc *grpc.ClientConn) VariantServiceV1Client {
return &variantServiceV1Client{cc}
}
func (c *variantServiceV1Client) ImportVariants(ctx context.Context, in *ImportVariantsRequest, opts ...grpc.CallOption) (*google_longrunning.Operation, error) {
out := new(google_longrunning.Operation)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/ImportVariants", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) CreateVariantSet(ctx context.Context, in *CreateVariantSetRequest, opts ...grpc.CallOption) (*VariantSet, error) {
out := new(VariantSet)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/CreateVariantSet", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) ExportVariantSet(ctx context.Context, in *ExportVariantSetRequest, opts ...grpc.CallOption) (*google_longrunning.Operation, error) {
out := new(google_longrunning.Operation)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/ExportVariantSet", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) GetVariantSet(ctx context.Context, in *GetVariantSetRequest, opts ...grpc.CallOption) (*VariantSet, error) {
out := new(VariantSet)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/GetVariantSet", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) SearchVariantSets(ctx context.Context, in *SearchVariantSetsRequest, opts ...grpc.CallOption) (*SearchVariantSetsResponse, error) {
out := new(SearchVariantSetsResponse)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/SearchVariantSets", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) DeleteVariantSet(ctx context.Context, in *DeleteVariantSetRequest, opts ...grpc.CallOption) (*google_protobuf1.Empty, error) {
out := new(google_protobuf1.Empty)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/DeleteVariantSet", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) UpdateVariantSet(ctx context.Context, in *UpdateVariantSetRequest, opts ...grpc.CallOption) (*VariantSet, error) {
out := new(VariantSet)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/UpdateVariantSet", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) SearchVariants(ctx context.Context, in *SearchVariantsRequest, opts ...grpc.CallOption) (*SearchVariantsResponse, error) {
out := new(SearchVariantsResponse)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/SearchVariants", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) CreateVariant(ctx context.Context, in *CreateVariantRequest, opts ...grpc.CallOption) (*Variant, error) {
out := new(Variant)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/CreateVariant", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) UpdateVariant(ctx context.Context, in *UpdateVariantRequest, opts ...grpc.CallOption) (*Variant, error) {
out := new(Variant)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/UpdateVariant", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) DeleteVariant(ctx context.Context, in *DeleteVariantRequest, opts ...grpc.CallOption) (*google_protobuf1.Empty, error) {
out := new(google_protobuf1.Empty)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/DeleteVariant", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) GetVariant(ctx context.Context, in *GetVariantRequest, opts ...grpc.CallOption) (*Variant, error) {
out := new(Variant)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/GetVariant", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) MergeVariants(ctx context.Context, in *MergeVariantsRequest, opts ...grpc.CallOption) (*google_protobuf1.Empty, error) {
out := new(google_protobuf1.Empty)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/MergeVariants", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) SearchCallSets(ctx context.Context, in *SearchCallSetsRequest, opts ...grpc.CallOption) (*SearchCallSetsResponse, error) {
out := new(SearchCallSetsResponse)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/SearchCallSets", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) CreateCallSet(ctx context.Context, in *CreateCallSetRequest, opts ...grpc.CallOption) (*CallSet, error) {
out := new(CallSet)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/CreateCallSet", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) UpdateCallSet(ctx context.Context, in *UpdateCallSetRequest, opts ...grpc.CallOption) (*CallSet, error) {
out := new(CallSet)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/UpdateCallSet", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) DeleteCallSet(ctx context.Context, in *DeleteCallSetRequest, opts ...grpc.CallOption) (*google_protobuf1.Empty, error) {
out := new(google_protobuf1.Empty)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/DeleteCallSet", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *variantServiceV1Client) GetCallSet(ctx context.Context, in *GetCallSetRequest, opts ...grpc.CallOption) (*CallSet, error) {
out := new(CallSet)
err := grpc.Invoke(ctx, "/google.genomics.v1.VariantServiceV1/GetCallSet", in, out, c.cc, opts...)
if err != nil {
return nil, err
}
return out, nil
}
// Server API for VariantServiceV1 service
type VariantServiceV1Server interface {
// Creates variant data by asynchronously importing the provided information.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// The variants for import will be merged with any existing variant that
// matches its reference sequence, start, end, reference bases, and
// alternative bases. If no such variant exists, a new one will be created.
//
// When variants are merged, the call information from the new variant
// is added to the existing variant, and Variant info fields are merged
// as specified in
// [infoMergeConfig][google.genomics.v1.ImportVariantsRequest.info_merge_config].
// As a special case, for single-sample VCF files, QUAL and FILTER fields will
// be moved to the call level; these are sometimes interpreted in a
// call-specific context.
// Imported VCF headers are appended to the metadata already in a variant set.
ImportVariants(context.Context, *ImportVariantsRequest) (*google_longrunning.Operation, error)
// Creates a new variant set.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// The provided variant set must have a valid `datasetId` set - all other
// fields are optional. Note that the `id` field will be ignored, as this is
// assigned by the server.
CreateVariantSet(context.Context, *CreateVariantSetRequest) (*VariantSet, error)
// Exports variant set data to an external destination.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
ExportVariantSet(context.Context, *ExportVariantSetRequest) (*google_longrunning.Operation, error)
// Gets a variant set by ID.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
GetVariantSet(context.Context, *GetVariantSetRequest) (*VariantSet, error)
// Returns a list of all variant sets matching search criteria.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.searchVariantSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L49).
SearchVariantSets(context.Context, *SearchVariantSetsRequest) (*SearchVariantSetsResponse, error)
// Deletes a variant set including all variants, call sets, and calls within.
// This is not reversible.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
DeleteVariantSet(context.Context, *DeleteVariantSetRequest) (*google_protobuf1.Empty, error)
// Updates a variant set using patch semantics.
//
// For the definitions of variant sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
UpdateVariantSet(context.Context, *UpdateVariantSetRequest) (*VariantSet, error)
// Gets a list of variants matching the criteria.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L126).
SearchVariants(context.Context, *SearchVariantsRequest) (*SearchVariantsResponse, error)
// Creates a new variant.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
CreateVariant(context.Context, *CreateVariantRequest) (*Variant, error)
// Updates a variant.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// This method supports patch semantics. Returns the modified variant without
// its calls.
UpdateVariant(context.Context, *UpdateVariantRequest) (*Variant, error)
// Deletes a variant.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
DeleteVariant(context.Context, *DeleteVariantRequest) (*google_protobuf1.Empty, error)
// Gets a variant by ID.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
GetVariant(context.Context, *GetVariantRequest) (*Variant, error)
// Merges the given variants with existing variants.
//
// For the definitions of variants and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Each variant will be
// merged with an existing variant that matches its reference sequence,
// start, end, reference bases, and alternative bases. If no such variant
// exists, a new one will be created.
//
// When variants are merged, the call information from the new variant
// is added to the existing variant. Variant info fields are merged as
// specified in the
// [infoMergeConfig][google.genomics.v1.MergeVariantsRequest.info_merge_config]
// field of the MergeVariantsRequest.
//
// Please exercise caution when using this method! It is easy to introduce
// mistakes in existing variants and difficult to back out of them. For
// example,
// suppose you were trying to merge a new variant with an existing one and
// both
// variants contain calls that belong to callsets with the same callset ID.
//
// // Existing variant - irrelevant fields trimmed for clarity
// {
// "variantSetId": "10473108253681171589",
// "referenceName": "1",
// "start": "10582",
// "referenceBases": "G",
// "alternateBases": [
// "A"
// ],
// "calls": [
// {
// "callSetId": "10473108253681171589-0",
// "callSetName": "CALLSET0",
// "genotype": [
// 0,
// 1
// ],
// }
// ]
// }
//
// // New variant with conflicting call information
// {
// "variantSetId": "10473108253681171589",
// "referenceName": "1",
// "start": "10582",
// "referenceBases": "G",
// "alternateBases": [
// "A"
// ],
// "calls": [
// {
// "callSetId": "10473108253681171589-0",
// "callSetName": "CALLSET0",
// "genotype": [
// 1,
// 1
// ],
// }
// ]
// }
//
// The resulting merged variant would overwrite the existing calls with those
// from the new variant:
//
// {
// "variantSetId": "10473108253681171589",
// "referenceName": "1",
// "start": "10582",
// "referenceBases": "G",
// "alternateBases": [
// "A"
// ],
// "calls": [
// {
// "callSetId": "10473108253681171589-0",
// "callSetName": "CALLSET0",
// "genotype": [
// 1,
// 1
// ],
// }
// ]
// }
//
// This may be the desired outcome, but it is up to the user to determine if
// if that is indeed the case.
MergeVariants(context.Context, *MergeVariantsRequest) (*google_protobuf1.Empty, error)
// Gets a list of call sets matching the criteria.
//
// For the definitions of call sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178).
SearchCallSets(context.Context, *SearchCallSetsRequest) (*SearchCallSetsResponse, error)
// Creates a new call set.
//
// For the definitions of call sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
CreateCallSet(context.Context, *CreateCallSetRequest) (*CallSet, error)
// Updates a call set.
//
// For the definitions of call sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// This method supports patch semantics.
UpdateCallSet(context.Context, *UpdateCallSetRequest) (*CallSet, error)
// Deletes a call set.
//
// For the definitions of call sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
DeleteCallSet(context.Context, *DeleteCallSetRequest) (*google_protobuf1.Empty, error)
// Gets a call set by ID.
//
// For the definitions of call sets and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
GetCallSet(context.Context, *GetCallSetRequest) (*CallSet, error)
}
func RegisterVariantServiceV1Server(s *grpc.Server, srv VariantServiceV1Server) {
s.RegisterService(&_VariantServiceV1_serviceDesc, srv)
}
func _VariantServiceV1_ImportVariants_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(ImportVariantsRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).ImportVariants(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/ImportVariants",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).ImportVariants(ctx, req.(*ImportVariantsRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_CreateVariantSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(CreateVariantSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).CreateVariantSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/CreateVariantSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).CreateVariantSet(ctx, req.(*CreateVariantSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_ExportVariantSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(ExportVariantSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).ExportVariantSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/ExportVariantSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).ExportVariantSet(ctx, req.(*ExportVariantSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_GetVariantSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(GetVariantSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).GetVariantSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/GetVariantSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).GetVariantSet(ctx, req.(*GetVariantSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_SearchVariantSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(SearchVariantSetsRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).SearchVariantSets(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/SearchVariantSets",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).SearchVariantSets(ctx, req.(*SearchVariantSetsRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_DeleteVariantSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(DeleteVariantSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).DeleteVariantSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/DeleteVariantSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).DeleteVariantSet(ctx, req.(*DeleteVariantSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_UpdateVariantSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(UpdateVariantSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).UpdateVariantSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/UpdateVariantSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).UpdateVariantSet(ctx, req.(*UpdateVariantSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_SearchVariants_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(SearchVariantsRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).SearchVariants(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/SearchVariants",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).SearchVariants(ctx, req.(*SearchVariantsRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_CreateVariant_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(CreateVariantRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).CreateVariant(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/CreateVariant",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).CreateVariant(ctx, req.(*CreateVariantRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_UpdateVariant_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(UpdateVariantRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).UpdateVariant(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/UpdateVariant",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).UpdateVariant(ctx, req.(*UpdateVariantRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_DeleteVariant_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(DeleteVariantRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).DeleteVariant(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/DeleteVariant",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).DeleteVariant(ctx, req.(*DeleteVariantRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_GetVariant_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(GetVariantRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).GetVariant(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/GetVariant",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).GetVariant(ctx, req.(*GetVariantRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_MergeVariants_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(MergeVariantsRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).MergeVariants(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/MergeVariants",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).MergeVariants(ctx, req.(*MergeVariantsRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_SearchCallSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(SearchCallSetsRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).SearchCallSets(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/SearchCallSets",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).SearchCallSets(ctx, req.(*SearchCallSetsRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_CreateCallSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(CreateCallSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).CreateCallSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/CreateCallSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).CreateCallSet(ctx, req.(*CreateCallSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_UpdateCallSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(UpdateCallSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).UpdateCallSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/UpdateCallSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).UpdateCallSet(ctx, req.(*UpdateCallSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_DeleteCallSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(DeleteCallSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).DeleteCallSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/DeleteCallSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).DeleteCallSet(ctx, req.(*DeleteCallSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _VariantServiceV1_GetCallSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(GetCallSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(VariantServiceV1Server).GetCallSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.VariantServiceV1/GetCallSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(VariantServiceV1Server).GetCallSet(ctx, req.(*GetCallSetRequest))
}
return interceptor(ctx, in, info, handler)
}
var _VariantServiceV1_serviceDesc = grpc.ServiceDesc{
ServiceName: "google.genomics.v1.VariantServiceV1",
HandlerType: (*VariantServiceV1Server)(nil),
Methods: []grpc.MethodDesc{
{
MethodName: "ImportVariants",
Handler: _VariantServiceV1_ImportVariants_Handler,
},
{
MethodName: "CreateVariantSet",
Handler: _VariantServiceV1_CreateVariantSet_Handler,
},
{
MethodName: "ExportVariantSet",
Handler: _VariantServiceV1_ExportVariantSet_Handler,
},
{
MethodName: "GetVariantSet",
Handler: _VariantServiceV1_GetVariantSet_Handler,
},
{
MethodName: "SearchVariantSets",
Handler: _VariantServiceV1_SearchVariantSets_Handler,
},
{
MethodName: "DeleteVariantSet",
Handler: _VariantServiceV1_DeleteVariantSet_Handler,
},
{
MethodName: "UpdateVariantSet",
Handler: _VariantServiceV1_UpdateVariantSet_Handler,
},
{
MethodName: "SearchVariants",
Handler: _VariantServiceV1_SearchVariants_Handler,
},
{
MethodName: "CreateVariant",
Handler: _VariantServiceV1_CreateVariant_Handler,
},
{
MethodName: "UpdateVariant",
Handler: _VariantServiceV1_UpdateVariant_Handler,
},
{
MethodName: "DeleteVariant",
Handler: _VariantServiceV1_DeleteVariant_Handler,
},
{
MethodName: "GetVariant",
Handler: _VariantServiceV1_GetVariant_Handler,
},
{
MethodName: "MergeVariants",
Handler: _VariantServiceV1_MergeVariants_Handler,
},
{
MethodName: "SearchCallSets",
Handler: _VariantServiceV1_SearchCallSets_Handler,
},
{
MethodName: "CreateCallSet",
Handler: _VariantServiceV1_CreateCallSet_Handler,
},
{
MethodName: "UpdateCallSet",
Handler: _VariantServiceV1_UpdateCallSet_Handler,
},
{
MethodName: "DeleteCallSet",
Handler: _VariantServiceV1_DeleteCallSet_Handler,
},
{
MethodName: "GetCallSet",
Handler: _VariantServiceV1_GetCallSet_Handler,
},
},
Streams: []grpc.StreamDesc{},
Metadata: "google.golang.org/genproto/googleapis/genomics/v1/variants.proto",
}
func init() {
proto.RegisterFile("google.golang.org/genproto/googleapis/genomics/v1/variants.proto", fileDescriptor11)
}
var fileDescriptor11 = []byte{
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0x00,
}
|