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.. _ranger:
======================
ranger.tacc.utexas.edu
======================
Here you find information about the the system
http://services.tacc.utexas.edu/index.php/ranger-user-guide.
The installation of user's packages on ranger EL4, 64-bit described below uses
`modules <http://modules.sourceforge.net/>`_, and assumes *csh* shell:
- packages are installed under ``~/CAMd``::
mkdir ~/CAMd
cd ~/CAMd
- module files are located under ``~/CAMd/modulefiles``
- download the :download:`customize_ranger_EL4.py` file::
wget https://svn.fysik.dtu.dk/projects/gpaw/trunk/doc/platforms/Linux/customize_ranger_EL4.py
.. literalinclude:: customize_ranger_EL4.py
- download packages with :download:`download_ranger.sh`,
buy running ``sh download_ranger.sh``:
.. literalinclude:: download_ranger.sh
- start with the following modules loaded::
login3% module list
Currently Loaded Modules:
1) TACC-paths 9) srb-client/3.4.1 17) globus/4.0.8
2) Linux 10) tg-policy/0.2 18) GLOBUS-4.0
3) cluster-paths 11) tgproxy/0.9.1 19) TERAGRID-DEV
4) pgi/7.2-5 12) tgresid/2.3.4 20) CTSSV4
5) mvapich/1.0.1 13) tgusage/3.0 21) gzip/1.3.12
6) binutils-amd/070220 14) uberftp/2.4 22) tar/1.22
7) TERAGRID-paths 15) tginfo/1.0.1 23) cluster
8) gx-map/0.5.3.3 16) TERAGRID-BASIC 24) TACC
- unload/load the modules::
module switch pgi/7.2-5 gcc/4.4.5
module swap mvapich openmpi/1.3b
module load python/2.5.2
module load mkl/10.0
- install packages, deploy modules and test with :download:`install_ranger_EL4.sh`,
buy running ``sh install_ranger_EL4.sh``:
.. literalinclude:: install_ranger_EL4.sh
**Note** that every time you wish to install a new version of a package,
and deploy new module file, better keep the old module file.
- submit the test job::
qsub submit.sh
using the following :file:`submit.sh`::
#!/bin/bash
#$ -V # Inherit the submission environment
#$ -cwd # Start job in submission directory
##$ -N myMPI # Job Name
##$ -j y # Combine stderr and stdout
##$ -o $JOB_NAME.o$JOB_ID # Name of the output file (eg. myMPI.oJobID)
#$ -pe 16way 32 # Requests 16 tasks/node, 32 cores total
#$ -q development # OR Queue name "normal"
#$ -l h_rt=00:40:00 # Run time (hh:mm:ss) - 40 mins
##$ -M # Use email notification address
##$ -m be # Email at Begin and End of job
#set -x # Echo commands, use "set echo" with csh
module use --append /share/home/01067/tg803307/CAMd/modulefiles
module load python/2.5.2
module load nose/0.11.3-1
module load numpy/1.5.0-1
module load campos-ase3
module load campos-gpaw-setups
module unload pgi
module load gcc/4.4.5
module unload mvapich
module load openmpi/1.3b
module load mkl/10.0
module load campos-gpaw
# wget http://svn.fysik.dtu.dk/projects/gpaw/trunk/doc/devel/256H2O/b256H2O.py
ibrun `which gpaw-python` b256H2O.py
- to enable the installation permanently add the following to *~/.bashrc*::
module use --append /share/home/01067/tg803307/CAMd/modulefiles
module load python/2.5.2
module load nose/0.11.3-1
module load numpy/1.5.0-1
module load campos-ase3
module load campos-gpaw-setups
module unload pgi
module load gcc/4.4.5
module unload mvapich
module load openmpi/1.3b
module load mkl/10.0
module load campos-gpaw
|
