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#!/usr/bin/env python3
import re
from optparse import OptionParser
import matplotlib.pyplot as plt
p = OptionParser(usage='%prog [OPTION] FILE...',
description='plot timings from gpaw parallel timer. '
'The timer dumps a lot of files called "timings.<...>.txt". '
'This programme plots the contents of those files. '
'Typically one would run "%prog timings.*.txt" to plot '
'timings on all cores.')
p.add_option('--interval', metavar='TIME1:TIME2',
help='plot only timings within TIME1 and TIME2 '
'after start of calculation.')
p.add_option('--align', metavar='NAME', default='SCF-cycle',
help='horizontally align timings of different ranks at first '
'call of NAME [default=%default]')
p.add_option('--nolegend', action='store_true',
help='do not plot the separate legend figure')
p.add_option('--nointeractive', action='store_true',
help='disable interactive legend')
opts, fnames = p.parse_args()
if opts.interval:
plotstarttime, plotendtime = map(float, opts.interval.split(':'))
else:
plotstarttime = 0
plotendtime = None
# We will read/store absolute timings T1 and T2, which are probably 1e9.
# For the plot we want timings relative to some starting point.
class Call:
def __init__(self, name, T1, level, rankno):
self.name = name
self.level = level # nesting level
self.T1 = T1
self.T2 = None
self.rankno = rankno
@property
def t1(self):
return self.T1 - alignments[self.rankno]
@property
def t2(self):
return self.T2 - alignments[self.rankno]
fig = plt.figure()
ax = fig.add_subplot(111)
fig.subplots_adjust(left=0.08, right=.95, bottom=0.07, top=.95)
patch_name_p = []
class Function:
thecolors = ['blue', 'green', 'red', 'cyan', 'magenta', 'yellow',
'darkred', 'indigo', 'springgreen', 'purple']
thehatches = ['', '//', 'O', '*', 'o', r'\\', '.', '|']
def __init__(self, name, num):
self.name = name
self.num = num
self.color = self.thecolors[num % len(self.thecolors)]
self.hatch = self.thehatches[num // len(self.thecolors)]
self.bar = None
self.calls = []
# Example: 'T42 >> 12.34 name (5.51s) started'
pattern = r'T\d+ \S+ (\S+) (.+?) \(.*?\) (started|stopped)'
functions = {}
functionslist = []
maxlevel = 0
alignments = []
firstcallsbyrank = []
lastcallsbyrank = []
for rankno, fname in enumerate(fnames):
alignment = None
ongoing = []
with open(fname) as fd:
for lineno, line in enumerate(fd):
m = re.match(pattern, line)
if m is None:
failing_line = line
break # Bad syntax
T, name, action = m.group(1, 2, 3)
T = float(T)
if action == 'started':
level = len(ongoing)
maxlevel = max(level, maxlevel)
call = Call(name, T1=T, level=level, rankno=rankno)
if lineno == 0:
assert len(firstcallsbyrank) == rankno
firstcallsbyrank.append(call)
if alignment is None and name == opts.align:
alignment = call.T1
if name not in functions:
function = Function(name, len(functions))
functions[name] = function
functionslist.append(function)
ongoing.append(call)
elif action == 'stopped':
assert action == 'stopped', action
call = ongoing.pop()
assert name == call.name
call.T2 = T
functions[name].calls.append(call)
# If we failed there may still be lines left. If there are no
# lines left, only last line was mangled (file was incomplete) and
# that is okay. Otherwise it's an error:
for line in fd:
p.error('Bad syntax: {}'.format(failing_line))
assert alignment is not None, 'Cannot align to "{}"'.format(opts.align)
alignments.append(alignment)
# End any remaining ongoing calls:
for call in ongoing:
call.T2 = T
functions[call.name].calls.append(call)
lastcallsbyrank.append(call)
tmp_tmin = min([call.t1 for call in firstcallsbyrank])
alignments = [a + tmp_tmin for a in alignments] # Now timings start at 0
tmax = max([call.t2 for call in lastcallsbyrank])
if plotendtime is None:
plotendtime = tmax
for name in sorted(functions):
function = functions[name]
plotcalls = []
for call in function.calls:
# Skip timings that fall out of the viewed interval:
if call.t2 < plotstarttime:
continue
if call.t1 > plotendtime:
continue
plotcalls.append(call)
# Shift: maxlevel, rank
bar = ax.bar([call.t1 for call in plotcalls],
height=[1.0] * len(plotcalls),
width=[call.T2 - call.T1 for call in plotcalls],
bottom=[call.level + call.rankno * (maxlevel + 1)
for call in plotcalls],
color=function.color,
hatch=function.hatch,
edgecolor='black',
align='edge',
label=function.name)
for child in bar.get_children():
patch_name_p.append((child, name))
ax.axis(xmin=plotstarttime, xmax=plotendtime)
if not opts.nolegend:
ncolumns = 1 + len(functionslist) // 32
namefig = plt.figure()
nameax = namefig.add_subplot(111)
for function in functionslist:
nameax.bar([0], [0], [0], [0],
color=function.color, hatch=function.hatch,
label=function.name[:20])
nameax.legend(handlelength=2.5,
labelspacing=0.0,
fontsize='large',
ncol=ncolumns,
mode='expand',
frameon=True,
loc='best')
if not opts.nointeractive:
default_text = 'Click on a patch to get the name'
p = fig.subplotpars
# Create interactive axes
box = (p.left, p.top, p.right - p.left, 1 - p.top)
fc = fig.get_facecolor()
try:
iax = fig.add_axes(box, facecolor=fc) # matplotlib 2.x
except AttributeError:
iax = fig.add_axes(box, axisbg=fc) # matplotlib 1.x
ibg = iax.patch
for s in iax.get_children():
if s != ibg:
s.set_visible(False)
itext = iax.text(0.5, 0.5, default_text, va='center', ha='center',
transform=iax.transAxes)
def print_name_event(event):
text = default_text
# Do action based on the chosen tool
# tb = fig.canvas.manager.toolbar
# if tb.mode != '':
# return
for patch, name in patch_name_p:
if patch.contains(event)[0]:
text = name
break
itext.set_text(text)
# The next lines can be replace with
# fig.canvas.draw()
# but it'll be very slow
iax.draw_artist(ibg)
iax.draw_artist(itext)
canvas = fig.canvas
if hasattr(canvas, 'update'):
canvas.update() # matplotlib 0.x
else:
canvas.blit() # matplotlib 2.x
canvas.flush_events()
fig.canvas.mpl_connect('button_press_event', print_name_event)
plt.show()
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