2006-11-14 17:56  warnes

	* man/heatmap.2.Rd: Correct problem with labeled correlation matrix
	  example. Thanks to Jean Vidal for reporting the error..

2006-08-02 22:21  warnes

	* trunk/BalloonPlotPaper/BalloonPlot.pdf,
	  trunk/BalloonPlotPaper/BalloonPlot.tex,
	  trunk/MSOfficeUtil/DESCRIPTION,
	  trunk/PathwayModeling/thesispaper/slides.tex,
	  trunk/RMCMC/DESCRIPTION, trunk/RMCMC/man/make.density.Rd,
	  trunk/Rlsf/DESCRIPTION, trunk/Rlsf/man/lsf.numcpu.Rd,
	  trunk/Rlsf/man/lsf.parRapply.Rd, trunk/Rlsf/man/scat.Rd,
	  trunk/bwRF/DESCRIPTION, trunk/bwRF/man/RF.Rd,
	  trunk/exp.ssize/inst/doc/ssize.pdf,
	  trunk/exp.ssize/inst/doc/ssize.tex, trunk/fork/DESCRIPTION,
	  trunk/fork/man/exit.Rd, trunk/fork/man/fork.Rd,
	  trunk/fork/man/getpid.Rd, trunk/fork/man/kill.Rd,
	  trunk/fork/man/signame.Rd, trunk/fork/man/wait.Rd,
	  trunk/gdata/inst/doc/gregmisc.tex,
	  trunk/gdata/man/ConvertMedUnits.Rd,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gdata/man/trim.Rd, trunk/gdata/man/unmatrix.Rd,
	  trunk/gdata/man/upperTriangle.Rd,
	  trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd, inst/doc/BalloonPlot.pdf,
	  man/balloonplot.Rd, man/bandplot.Rd, man/boxplot.n.Rd,
	  man/colorpanel.Rd, man/hist2d.Rd, man/ooplot.Rd, man/overplot.Rd,
	  man/plot.lm2.Rd, man/plotCI.Rd, man/plotmeans.Rd,
	  man/residplot.Rd, man/sinkplot.Rd, man/smartlegend.Rd,
	  man/space.Rd, man/textplot.Rd, man/wapply.Rd,
	  trunk/gregmisc/DESCRIPTION,
	  trunk/gregmisc/gregmisc/DESCRIPTION.standalone,
	  trunk/gregmisc/inst/doc/gregmisc.tex,
	  trunk/gtools/man/addLast.Rd, trunk/gtools/man/assert.Rd,
	  trunk/gtools/man/capture.Rd, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/defmacro.Rd, trunk/gtools/man/dirichlet.Rd,
	  trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd,
	  trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd,
	  trunk/gtools/man/oddeven.Rd, trunk/gtools/man/permute.Rd,
	  trunk/gtools/man/quantcut.Rd, trunk/gtools/man/running.Rd,
	  trunk/gtools/man/scat.Rd, trunk/gtools/man/setTCPNoDelay.Rd,
	  trunk/nws/DESCRIPTION, trunk/qvalue/DESCRIPTION,
	  trunk/qvalue/man/print.qvalue.Rd, trunk/ssize/DESCRIPTION,
	  trunk/ssize/man/pow.Rd: Update my email address

2006-06-26 21:08  nj7w

	* R/heatmap.2.R: Fixed a bug which displayed warnings when Rowv and
	  Colv were specified as dendrograms

2006-03-10 17:24  warnes

	* tests/heatmap2Test.R: Remove code that added a local path

2006-03-09 22:53  nj7w

	* tests/heatmap2Test.R, tests/heatmap2Test.Rout.save: Added the
	  correct library path where gplots is installed locally and
	  corresponding .save file

2006-03-09 22:40  nj7w

	* tests/heatmap2Test.R: Updated the tests file

2006-03-09 22:39  nj7w

	* R/heatmap.2.R: Removed the condition Colv != Rowv as it has
	  already been taken care of

2006-03-09 22:17  nj7w

	* rtPCR.rda: Deleted rtPCR.rda from the main directory

2006-03-09 22:09  nj7w

	* ChangeLog: Added ChangeLog

2006-03-07 18:18  nj7w

	* DESCRIPTION, NEWS: Updated ChangeLog and NEWS

2006-03-07 18:10  nj7w

	* tests, tests/heatmap2Test.R, tests/heatmap2Test.Rout.save: Added
	  the tests and fixed corrupted files

2006-03-07 16:22  nj7w

	* data/rtPCR.rda: Replaced the corrupted rtPCR.rda file in data
	  directory

2006-03-07 16:14  nj7w

	* tests: Removed the corrputed tests directory

2006-03-07 16:12  nj7w

	* data/rtPCR.rda, rtPCR.rda: Replaced the corrupted rtPCR.rda file
	  in data directory

2006-03-03 21:03  nj7w

	* R/heatmap.2.R, man/heatmap.2.Rd: Updated the code and man page to
	  make sure the Rowv and Colv values are properly handled

2006-03-02 21:43  warnes

	* R/balloonplot.R: Adjust row total placement to adjust for width
	  of the totals

2006-03-02 21:26  warnes

	* DESCRIPTION, R/balloonplot.R, man/1: Row totals in ballonplot
	  were in reverse order. Fixed.

2006-02-23 22:00  nj7w

	* R/heatmap.2.R, tests/heatmap2Test.R: Add ability to scale the
	  color key using the new 'keysize' argument.

2006-02-23 21:34  nj7w

	* tests, tests/heatmap2Test.R, tests/heatmap2Test.Rout.save: Add
	  tests for heatmap.2

2006-02-23 21:25  nj7w

	* inst/doc/Figure1.eps, inst/doc/Table.eps, inst/doc/bka.bst,
	  inst/doc/heatmap2.R, inst/doc/heatmap2.tex,
	  inst/doc/regression_rank_image.Rda,
	  inst/doc/regression_rank_image_II.Rda: Move heatmap and
	  ballonplot paper source materials to their respective cvs modules

2006-02-23 21:20  nj7w

	* inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex,
	  inst/doc/Figure1.pdf, inst/doc/Figure2.pdf, inst/doc/Figure3.pdf,
	  inst/doc/Figure4.pdf, inst/doc/Rnews.sty,
	  inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
	  inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Moved
	  balloonplot paper materials to BallonPlotPaper cvs module

2006-02-23 21:18  nj7w

	* inst/doc/colSeparator.pdf, inst/doc/logData.pdf,
	  inst/doc/logDataColDendrogram.pdf, inst/doc/logDataColOrd.pdf,
	  inst/doc/logDataColOrdNo.pdf, inst/doc/logDataRowDendrogram.pdf,
	  inst/doc/origScale.pdf, inst/doc/rowSeparator.pdf,
	  inst/doc/scaled.pdf: Remove heatmap paper files and move them to
	  the HeatmapPaper cvs module.

2006-02-23 19:57  nj7w

	* inst/doc/colSeparator.pdf, inst/doc/logData.pdf,
	  inst/doc/logDataColDendrogram.pdf, inst/doc/logDataColOrd.pdf,
	  inst/doc/logDataColOrdNo.pdf, inst/doc/logDataRowDendrogram.pdf,
	  inst/doc/origScale.pdf, inst/doc/rowSeparator.pdf,
	  inst/doc/scaled.pdf: Added figures for heatmap2 paper

2006-02-23 19:54  nj7w

	* inst/doc/regression_rank_image.Rda,
	  inst/doc/regression_rank_image_II.Rda: Added the .Rda files for
	  the heatmap2 paper

2006-02-23 19:52  nj7w

	* inst/doc/heatmap2.tex: Added the source - (tex file) of the
	  heatmap paper

2006-02-23 19:51  nj7w

	* inst/doc/heatmap2.R: Added the code for the figures of heatmap
	  paper

2006-02-21 22:19  nj7w

	* R/heatmap.2.R, man/heatmap.2.Rd: Minor updates to heatmap.2 -
	  fixed Rowv, Colv and dendrogram behaviour. Now Rowv=NULL or FALSE
	  both imply no dendrogram computation.

2006-01-12 23:10  warnes

	* inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.pdf,
	  inst/doc/BalloonPlot.tex, inst/doc/Figure1.pdf,
	  inst/doc/Figure2.pdf, inst/doc/Figure3.pdf, inst/doc/Figure4.pdf:
	  more updates

2006-01-12 23:01  warnes

	* inst/doc/bka.bst: Add Biometrica bibliography style file

2006-01-12 22:34  warnes

	* inst/doc/BalloonPlot.tex: A little more.

2006-01-12 22:32  warnes

	* inst/doc/BalloonPlot.tex: Updates to respond to referee.

2006-01-12 19:59  nj7w

	* inst/doc/BalloonPlot.tex: Added references

2005-12-13 17:01  nj7w

	* inst/doc/BalloonPlot.tex: Fixed Nitin's company name

2005-12-13 16:18  nj7w

	* ChangeLog, NEWS, trunk/gtools/NEWS: Updated NEWS and removed
	  ChangeLog

2005-12-12 22:20  nj7w

	* R/plotmeans.R: Fixed bug in plotmeans - based on Stefano Calza's
	  suggestion

2005-12-07 18:52  nj7w

	* DESCRIPTION: Updated version number

2005-12-07 18:50  nj7w

	* NAMESPACE, R/plot.lm.R, man/plot.lm2.Rd: Added plot.lm

2005-12-07 18:48  nj7w

	* man/barplot2.Rd: Changed the default grey colors to heat colors,
	  if height is matrix

2005-12-07 18:48  nj7w

	* R/barplot2.R: Changed the default greay colors to heat colors, if
	  height is matrix

2005-12-06 22:41  nj7w

	* man/barplot2.Rd: Fixed minor error in documentation of barplot2

2005-12-02 21:11  warnes

	* R/plot.lm.R: Remove .Alias calls, since .Alias is defunct.

2005-12-01 16:54  nj7w

	* trunk/gmodels/man/ci.Rd, trunk/gmodels/man/coefFrame.Rd,
	  trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fit.contrast.Rd,
	  trunk/gmodels/man/make.contrasts.Rd, man/balloonplot.Rd,
	  man/bandplot.Rd, man/boxplot.n.Rd, man/colorpanel.Rd,
	  man/overplot.Rd, man/plotmeans.Rd, man/textplot.Rd,
	  man/wapply.Rd, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd,
	  trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd,
	  trunk/gtools/man/oddeven.Rd, trunk/gtools/man/quantcut.Rd,
	  trunk/gtools/man/running.Rd: Updated Greg's email address

2005-11-23 22:05  nj7w

	* inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.pdf,
	  inst/doc/BalloonPlot.tex, inst/doc/Figure2.pdf: Updated Figure 2
	  colors

2005-11-18 20:40  warnes

	* inst/doc/BalloonPlot.pdf, inst/doc/Figure1.pdf,
	  inst/doc/Figure2.pdf, inst/doc/Figure3.pdf, inst/doc/Figure4.pdf:
	  Latest version of the pdf files

2005-11-18 20:37  warnes

	* inst/doc/BalloonPlot.tex: Nitin works for the Cambrige Group, not
	  Pfizer.

2005-11-18 20:34  warnes

	* inst/doc/BalloonPlot.tex: Minor text rewording.

2005-11-18 20:31  warnes

	* inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex: More edits.

2005-11-18 19:50  warnes

	* R/balloonplot.R: Recent changes to align row totals with the
	  overall total broke how
	  the marginal cumulative fractions were displayed. This patch
	  fixes
	  the problem.

2005-11-18 01:17  warnes

	* DESCRIPTION, R/balloonplot.R, R/plot.lm.R,
	  inst/doc/BalloonPlot.pdf, man/balloonplot.Rd: - Update
	  documentation for balloonplot to match the latest code.
	  - Correct spelling of 'show.zeroes' to 'show.zeros'

2005-11-18 00:16  warnes

	* R/colorpanel.R: More changes: colorpanel now allows only 2 colors
	  to be specified if
	  no 'middle' color is desired.

2005-11-17 22:08  warnes

	* R/balloonplot.R: Allow user to control removal of duplicate
	  entries in balloonplot.

2005-11-17 22:06  warnes

	* R/colorpanel.R, man/colorpanel.Rd: Extend colorpanel to handle
	  just two-colors in addition to three.

2005-11-09 22:39  nj7w

	* inst/doc/BalloonPlot.pdf: Updated the pdf file

2005-11-09 22:38  nj7w

	* inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex: Updated the
	  changes

2005-11-09 22:29  nj7w

	* inst/doc/Figure4.pdf: Modified figure 4

2005-11-09 22:29  nj7w

	* inst/doc/BalloonPlot.R: Updated code

2005-11-09 22:20  nj7w

	* inst/doc/Figure3.pdf: Modified figure 3

2005-11-09 22:20  nj7w

	* inst/doc/Figure2.pdf: Modified figure 2

2005-11-09 22:19  nj7w

	* inst/doc/Figure1.pdf: Modified figure 1

2005-11-08 16:19  nj7w

	* man/plotCI.Rd: Updated Greg's email

2005-11-07 16:58  nj7w

	* inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Minor
	  modifications to fit the code properly on pdf

2005-11-07 14:22  warnes

	* inst/doc/BalloonPlot.R: Add R code that generates plots

2005-11-07 14:18  warnes

	* inst/doc/Figure2.pdf, inst/doc/Figure3.pdf, inst/doc/Figure4.pdf:
	  Add figures to CVS

2005-11-07 14:18  warnes

	* inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex,
	  inst/doc/Figure1.pdf: Text changes

2005-11-04 21:48  warnes

	* R/balloonplot.R: Fix some alignment issues.

2005-11-04 19:05  warnes

	* inst/doc/BalloonPlot.pdf, inst/doc/Table.pdf: Remove Table.pdf
	  since it is no longer needed

2005-11-04 19:04  warnes

	* inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex,
	  inst/doc/Figure1.pdf: Nitin's Changes

2005-11-04 19:00  warnes

	* inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
	  inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Add figure
	  plots

2005-11-04 18:59  warnes

	* inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Fix paths

2005-10-20 18:36  nj7w

	* inst/doc/Figure1.eps, inst/doc/Table.eps: added the eps version
	  of figures

2005-10-20 18:35  nj7w

	* inst/doc/BalloonPlot.pdf: Updated BallonPlot.pdf

2005-10-20 18:34  nj7w

	* inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
	  inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Removed Old
	  Figure

2005-10-20 18:31  nj7w

	* inst/doc/Figure1.pdf, inst/doc/Table.pdf: Added the new figure -
	  for total popluation - Balloonplot

2005-10-20 18:29  nj7w

	* inst/doc/BalloonPlot.tex: Modified the BallonPlot article

2005-10-20 14:12  nj7w

	* inst/doc/BalloonPlot.tex: Added references

2005-10-19 16:57  arnima

	* man/rich.color.Rd: The last example now displays the correct
	  heat.colors.
	  Default 'palette' argument is now a single string, not a vector.

2005-10-19 16:56  arnima

	* R/rich.color.R: Default 'palette' argument is now a single
	  string, not a vector.

2005-10-14 19:13  warnes

	* DESCRIPTION, R/balloonplot.R, man/balloonplot.Rd: Formatting
	  fixes:
	  - Handle multiple row or column category variables
	  - Separate rows/columns of category labels by lines
	  - Fix handling of 'cumsum' plots on row/column labels
	  - Improve display of row/column sums

2005-10-13 20:00  warnes

	* man/balloonplot.Rd: Add example using Titanic data that exercises
	  the multi-factor
	  display.

2005-10-11 21:20  warnes

	* R/balloonplot.R: Initial changes to allow multiple x and y factor
	  variables. Yet to
	  be done: 1) remove extra 'boxes'. 2) omit duplicated values

2005-10-04 19:39  warnes

	* inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: more minor
	  fixes

2005-10-04 19:29  warnes

	* inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: fix spacing

2005-10-04 19:08  warnes

	* inst/doc/Rnews.sty: Inlcude Rnews.sty

2005-10-04 19:07  warnes

	* inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Some textual
	  edits.

2005-10-03 16:23  nj7w

	* inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
	  inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Added figures
	  for the R-News Article

2005-09-29 21:02  nj7w

	* inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Updated the
	  documentation - added the name of the person who asked the
	  question

2005-09-29 20:29  nj7w

	* inst, inst/doc, inst/doc/BalloonPlot.pdf,
	  inst/doc/BalloonPlot.tex: Added R-news article

2005-09-12 15:44  nj7w

	* trunk/gdata/man/aggregate.table.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/trim.Rd,
	  trunk/gdata/man/unmatrix.Rd, trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/glh.test.Rd, man/hist2d.Rd, man/ooplot.Rd,
	  man/residplot.Rd, man/sinkplot.Rd, man/smartlegend.Rd,
	  man/space.Rd, trunk/gtools/man/assert.Rd,
	  trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/permute.Rd,
	  trunk/gtools/man/scat.Rd: Updated Greg's email

2005-09-12 14:45  nj7w

	* R/balloonplot.R: Updated version of balloonplot - by Romain
	  Francois <francoisromain@free.fr>

2005-09-09 20:34  nj7w

	* ChangeLog, DESCRIPTION: Updated the version and ChangeLog

2005-09-09 20:32  nj7w

	* R/balloonplot.R, man/balloonplot.Rd: Changes in ballon plot based
	  on Romain Francois (francoisromain@free.fr) suggestions

2005-09-06 21:41  nj7w

	* DESCRIPTION: Updated package dependencies

2005-09-06 21:41  nj7w

	* NEWS: Added NEWS

2005-09-02 23:10  nj7w

	* trunk/gmodels/ChangeLog, ChangeLog: Added ChangeLog

2005-08-31 16:28  nj7w

	* trunk/gdata/DESCRIPTION, trunk/gmodels/DESCRIPTION, DESCRIPTION:
	  Added DESCRIPTION file

2005-08-31 16:27  nj7w

	* trunk/gdata/DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
	  DESCRIPTION.in: removed DESCRIPTION.in

2005-06-09 14:20  nj7w

	* trunk/gdata/R/Args.R, trunk/gdata/R/aggregate.table.R,
	  trunk/gdata/R/combine.R, trunk/gdata/R/elem.R,
	  trunk/gdata/R/env.R, trunk/gdata/R/frameApply.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
	  trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
	  trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
	  trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
	  trunk/gdata/R/unmatrix.R, trunk/gdata/inst/perl/IO/AtomicFile.pm,
	  trunk/gdata/inst/perl/IO/InnerFile.pm,
	  trunk/gdata/inst/perl/IO/Lines.pm,
	  trunk/gdata/inst/perl/IO/Scalar.pm,
	  trunk/gdata/inst/perl/IO/Scalar.pm.html,
	  trunk/gdata/inst/perl/IO/ScalarArray.pm,
	  trunk/gdata/inst/perl/IO/Stringy.pm,
	  trunk/gdata/inst/perl/IO/Wrap.pm,
	  trunk/gdata/inst/perl/IO/WrapTie.pm,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/drop.levels.Rd, trunk/gdata/man/interleave.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/rename.vars.Rd,
	  trunk/gdata/man/reorder.Rd, trunk/gmodels/R/ci.R,
	  trunk/gmodels/R/coefFrame.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
	  trunk/gmodels/man/CrossTable.Rd, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/coefFrame.Rd, trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd, R/balloonplot.R,
	  R/bandplot.R, R/boxplot.n.R, R/colorpanel.R, R/heatmap.2.R,
	  R/hist2d.R, R/lowess.R, R/ooplot.R, R/overplot.R, R/plotCI.R,
	  R/plotmeans.R, R/qqnorm.aov.R, R/residplot.R, R/rich.color.R,
	  R/sinkplot.R, R/smartlegend.R, R/space.R, R/textplot.R,
	  R/wapply.R, man/1, man/bandplot.Rd, man/barplot2.Rd,
	  man/boxplot.n.Rd, man/hist2d.Rd, man/lowess.Rd, man/plotCI.Rd,
	  man/plotmeans.Rd, man/residplot.Rd, man/space.Rd, man/wapply.Rd,
	  trunk/gtools/R/RSCompat.S, trunk/gtools/R/combinations.R,
	  trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R,
	  trunk/gtools/R/invalid.R, trunk/gtools/R/logit.R,
	  trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
	  trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
	  trunk/gtools/R/running.R, trunk/gtools/R/scat.R,
	  trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/foldchange.Rd,
	  trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd,
	  trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd,
	  trunk/gtools/man/permute.Rd, trunk/gtools/man/quantcut.Rd,
	  trunk/gtools/man/running.Rd, trunk/gtools/man/scat.Rd: Updating
	  the version number, and various help files to synchronize
	  splitting of gregmisc bundle in 4 individual components.

2005-06-09 14:15  nj7w

	* R/barplot2.R: Changes based on Marc Schwartz's suggestions to
	  handel 0's and NA's appropriately.

2005-05-13 18:59  nj7w

	* trunk/gdata/R/read.xls.R, trunk/gmodels/man/CrossTable.Rd,
	  man/heatmap.2.Rd: 1) Using dQuote.ascii function in read.xls as
	  the new version of dQuote doesn't work proprly with UTF-8 locale.
	  2) Modified CrossTable.Rd usage in gmodels
	  3) Modified heatmap.2 usage in gplots.

2005-04-04 14:23  warnes

	* R/overplot.R: Explicitly reference package containing
	  lowess.formula in
	  panel.overplot(). This should fix the error reported by Troels
	  Ring
	  <tring@gvdnet.dk>.

2005-02-26 01:15  nj7w

	* trunk/gdata/NAMESPACE, trunk/gdata/man/elem.Rd,
	  trunk/gdata/man/env.Rd, trunk/gdata/man/ll.Rd,
	  trunk/gdata/man/read.xls.Rd, R/heatmap.2.R, man/heatmap.2.Rd,
	  man/rich.color.Rd, man/sinkplot.Rd, man/textplot.Rd: *** empty
	  log message ***

2005-02-25 23:22  warnes

	* trunk/gdata/R/elem.R, trunk/gdata/R/env.R, trunk/gdata/R/ll.R,
	  trunk/gdata/man/Args.Rd, trunk/gdata/man/env.Rd,
	  trunk/gdata/man/ll.Rd, man/rich.color.Rd: Integrate changes
	  submitted by Arni Magnusson

2005-02-25 22:31  warnes

	* NAMESPACE: Add dependency imports from 'stats' package.

2005-02-22 21:01  warnes

	* R/bandplot.R: Fix problem in passing graphical parameters
	  (xlim,etc).@

2005-02-08 16:41  warnes

	* DESCRIPTION.in: Improve package title.

2005-02-08 16:40  warnes

	* R/heatmap.2.R: Ignore missing values when computing symmetric
	  range.

2005-02-02 19:25  warnes

	* man/plotmeans.Rd: Add more extensive example.

2005-01-14 19:05  warnes

	* R/textplot.R: Code can be simplified because R now supports
	  selecting a fixed width font.

2005-01-12 20:50  warnes

	* trunk/gdata/DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
	  DESCRIPTION.in, trunk/gtools/DESCRIPTION.in: Add dependency on R
	  1.9.0+ to prevent poeple from installing on old
	  versions of R which don't support namespaces.

2004-11-30 01:06  warnes

	* R/heatmap.2.R, man/heatmap.2.Rd: 1. Add new parameters for
	  controlling color key:
	  - If `symkey==TRUE', the color key will be made symmetric about
	  0.
	  - The `densadj' parameter can be used to modify the smoother
	  width
	  (see the `adjust' parameter under `help(density)') for the
	  density
	  plotted in the key.
	  
	  2. Fix handling of rowsep/colsep.
	  
	  3. Vector of length 2 giving the width (colsep) or height
	  (rowsep) the separator box
	  drawn by colsep and rowsep as a function of the width (colsep) or
	  height (rowsep) of a cell.
	  
	  4. Appropriate changes to the corresponding help page, plus some
	  minor formatting changes.

2004-11-03 19:43  warnes

	* R/heatmap.2.R: Fix bugs in layout of cell notes. They were being
	  plotted top down
	  rather than bottom up. Further reordering of the x matrix didn't
	  also reorder the notes. Both issues should now be resolved.

2004-09-27 21:01  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory,
	  trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
	  DESCRIPTION, DESCRIPTION.in, man/sinkplot.Rd, man/textplot.Rd,
	  trunk/gregmisc/.Rhistory, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in,
	  trunk/gtools/man/running.Rd: Updated to pass R CMD check.

2004-09-03 22:50  warneg

	* man/textplot.Rd: Provide explicit package for call to nobs.

2004-09-03 22:50  warneg

	* man/heatmap.2.Rd: Fix typos.

2004-09-03 17:27  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/R/Args.R,
	  trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
	  trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
	  trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
	  trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
	  trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
	  trunk/gdata/man/reorder.Rd, trunk/gmodels/DESCRIPTION,
	  trunk/gmodels/NAMESPACE, trunk/gmodels/R/CrossTable.R,
	  trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
	  trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd, DESCRIPTION, NAMESPACE,
	  R/balloonplot.R, R/bandplot.R, R/barplot2.R, R/boxplot.n.R,
	  R/colorpanel.R, R/heatmap.2.R, R/hist2d.R, R/lowess.R,
	  R/ooplot.R, R/overplot.R, R/plotCI.R, R/plotmeans.R,
	  R/qqnorm.aov.R, R/residplot.R, R/rich.color.R, R/sinkplot.R,
	  R/smartlegend.R, R/space.R, R/textplot.R, R/wapply.R,
	  trunk/gtools/DESCRIPTION, trunk/gtools/NAMESPACE,
	  trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R,
	  trunk/gtools/R/invalid.R, trunk/gtools/R/mixedsort.R,
	  trunk/gtools/R/oddeven.R, trunk/gtools/R/permute.R,
	  trunk/gtools/R/quantcut.R, trunk/gtools/R/running.R,
	  trunk/gtools/man/running.Rd: initial bundle checkin

2004-09-02 17:14  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory,
	  trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
	  trunk/gmodels/NAMESPACE, DESCRIPTION, DESCRIPTION.in, NAMESPACE,
	  man/1, man/residplot.Rd, trunk/gregmisc/.Rhistory,
	  trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in,
	  trunk/gtools/NAMESPACE: Initial revision

2004-07-29 14:49  warnes

	* R/plotCI.R, man/plotCI.Rd: Integrate changes from the version of
	  plotCI maintained by Martin Maechler.

2004-06-30 19:32  warnes

	* R/textplot.R: Remove commented-out code.

2004-06-30 19:26  warnes

	* R/textplot.R: Fixed text size calculations

2004-06-28 20:16  warnes

	* R/barplot2.R, man/barplot2.Rd: - Default 2-d color set to grey as
	  in (v2.0.0) r-devel
	  - The default (v1.9.1) barplot method now handles vectors and 1-d
	  arrays
	  (e.g., obtained by table()) the same, and uses grey instead of
	  heat color palettes in these cases. (Also fixes PR#6776.)
	  - Updated to reflect the addition of 'offset' argument in base
	  - Fix bug in stacked barplots, which would not be plotted
	  properly

2004-06-24 16:57  warnes

	* R/heatmap.2.R, man/heatmap.2.Rd: Add ability to specify color of
	  NA cells.

2004-05-27 15:11  warnes

	* man/plotCI.Rd: Fix spelling error.

2004-05-26 14:56  warnes

	* R/overplot.R: One more fix to get it right.

2004-05-26 13:50  warnes

	* R/overplot.R: Use triple-colon operator ':::' to access
	  plot.formula from the graphics package.

2004-05-26 13:19  warnes

	* man/rich.color.Rd: Replace 'F' by 'FALSE' to pass R CMD check.

2004-05-25 18:32  warnes

	* R/overplot.R: Work around bug in R 1.9.X due to plot.formula()
	  not having the same
	  arguments as plot().

2004-05-25 17:33  warnes

	* R/rich.color.R, man/rich.color.Rd: Add rich.colors() submitted by
	  Arni Magnusson <arnima@u.washington.edu>.

2004-05-25 02:58  warnes

	* R/ooplot.R, man/ooplot.Rd: ??

2004-05-24 23:43  warnes

	* R/plotCI.R, R/plotmeans.R: Modified to use invalid() to check
	  arguments instead of missing().
	  This fixes some build errors under R-1.9.0-Patched.

2004-04-22 15:44  warnes

	* R/ooplot.R, man/ooplot.Rd: Integrate changes from Lodewijk
	  Bonebakker <bonebakker@comcast.net>

2004-04-13 13:42  warnes

	* R/space.R, man/space.Rd: Add ability to space points along 'y'
	  direction.

2004-04-02 19:06  warnes

	* R/smartlegend.R: Fixed smartlegend() positioning when x and/or y
	  axis are log-scale.

2004-03-30 19:04  warnes

	* R/textplot.R, trunk/gregmisc/DESCRIPTION: - Fix bug in textplot()
	  reported by Wright, Kevin <kevin.d.wright@pioneer.com>.

2004-03-26 22:27  warnes

	* man/textplot.Rd: Update to match changes in textplot() code.

2004-03-26 22:25  warnes

	* man/ooplot.Rd: Remove Windows EOL characters.

2004-03-26 22:20  warnes

	* man/barplot2.Rd: - Remove some commented-out code.
	  - Remove cvs log tag.

2004-03-26 22:16  warnes

	* R/textplot.R: Misc changes.

2004-02-17 22:22  warnes

	* man/ooplot.Rd: Minor fix to ooplot documentation.

2004-02-17 22:21  warnes

	* R/ooplot.R, man/ooplot.Rd: Integrate ooplot updates provided by
	  Lodewijk Bonebakker
	  <bonebakker@comcast.net>

2004-02-02 16:26  warnes

	* R/colorpanel.R, man/colorpanel.Rd: - Add colorpanel function,
	  which generates a smoothly varying band of
	  colors over a three color range (lo, mid, high).

2004-01-21 12:07  warnes

	* man/textplot.Rd: - Correct arguments to halign to match code.

2004-01-21 05:17  warnes

	* R/lowess.R: Track R 1.9.0's move of 'lowess' from the base
	  package to the (new)
	  stats package.

2004-01-21 04:44  warnes

	* man/sinkplot.Rd: - Fix sinkplot() example by replacing 'T' with
	  'TRUE'.

2004-01-21 04:42  warnes

	* man/ooplot.Rd: - Add some more details to the ooplot()
	  documentation. The
	  documentation is *not* complete.

2004-01-21 04:31  warnes

	* R/textplot.R, trunk/gtools/R/capture.R: - Mark sprint() as
	  depreciated.
	  - Replace references to sprint with capture.output()
	  - Use match.arg for halign and valign arguments to
	  textplot.default.
	  - Fix textplot.character so that a vector of characters is
	  properly
	  displayed. Previouslt, character vectors were plotted on top of
	  each
	  other.

2004-01-19 23:43  warnes

	* R/sinkplot.R, man/sinkplot.Rd: New function sinkplot(), as
	  requested on R-devel by Kevin Wright
	  <kwright@eskimo.com> in
	  https://www.stat.math.ethz.ch/pipermail/r-devel/2004-January/028483.html.

2004-01-15 05:14  warnes

	* R/ooplot.R, man/ooplot.Rd: Add initial code and docs for ooplot()
	  function submitted by Lodewijk
	  Bonebakker <bonebakker@comcast.net>.

2003-12-03 02:46  warnes

	* trunk/gdata/man/elem.Rd, trunk/gdata/man/ll.Rd, man/lowess.Rd,
	  man/textplot.Rd, man/wapply.Rd, trunk/gtools/man/foldchange.Rd: -
	  match function argument defaults with 'usage'

2003-12-03 02:42  warnes

	* R/heatmap.2.R, man/heatmap.2.Rd: - Fix buglets in heatmap
	  function
	  - Make a slight enhancement to the example code.

2003-12-02 22:49  warnes

	* R/heatmap.2.R: Integrated some suggestions from Sean Davis
	  <sdavis2@mail.nih.gov>.

2003-12-02 18:22  warnes

	* man/heatmap.2.Rd: - Make final example use 16 colors instead of
	  8. This looks nicer.

2003-12-02 16:58  warnes

	* man/barplot2.Rd: - Remove '%' character from example code to
	  avoid errors.

2003-12-02 16:54  warnes

	* R/plotCI.R: - Add '...' parameter to call to text to allow user
	  to control size/color/etc.

2003-12-01 16:00  warnes

	* man/barplot2.Rd: - updated to match changes to barplot() in base.

2003-12-01 15:59  warnes

	* data, data/rtPCR.rda: - Renamed rtPCR.Rda to rtPCR.rda so that R
	  will properly load the file
	  when data(rtPCR) is executed.

2003-12-01 15:55  warnes

	* R/barplot2.R: - Follow patches applied to barplot() in base.

2003-11-24 21:32  warnes

	* man/heatmap.2.Rd: Fix unbalanced braces.

2003-11-24 15:09  warnes

	* R/overplot.R, man/overplot.Rd: Fix errors reported by R CMD
	  check.

2003-11-21 23:13  warnes

	* man/overplot.Rd: Added missing closing brace.

2003-11-21 23:08  warnes

	* man/rtPCR.Rd: Initial addition of these files. Used in examples
	  of overplot().

2003-11-21 22:59  warnes

	* R/heatmap.2.R, man/heatmap.2.Rd: Applied my enhancements to the
	  heatmap() code from R 1.8.0, and added
	  documentation of these changes.

2003-11-21 22:58  warnes

	* R/overplot.R, man/overplot.Rd: - Discovered that axis(N) does the
	  right thing without needing to be
	  given location for tick marks. This allowed simplification of the
	  code.
	  
	  - Minor other changes for distribution
	  
	  - Addition of overplot.Rd documentation.

2003-11-21 19:50  warnes

	* R/heatmap.2.R, man/heatmap.2.Rd: - Integrated my extensions into
	  the R 1.8.0 version of heatmap.
	  - Add Rd documentation.

2003-11-19 14:52  warnes

	* man/bandplot.Rd: Remove extranious NULL that confused R CMD
	  check.

2003-11-18 18:59  warnes

	* man/barplot2.Rd: - Tiny fix to remove R CMD check error.

2003-11-18 18:58  warnes

	* man/smartlegend.Rd: - Added missing closing brace.

2003-11-18 18:45  warnes

	* trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R,
	  trunk/gdata/R/ll.R, R/overplot.R: - Convert from MS-Dos to Unix
	  line endings.
	  - Reformat to 80 columns.

2003-11-10 22:11  warnes

	* trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R,
	  trunk/gdata/R/ll.R, trunk/gdata/man/elem.Rd,
	  trunk/gdata/man/env.Rd, trunk/gdata/man/is.what.Rd,
	  trunk/gdata/man/keep.Rd, trunk/gdata/man/ll.Rd, R/heatmap.2.R,
	  R/overplot.R, R/plotmeans.R, R/space.R, R/wapply.R,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/capture.R,
	  trunk/gtools/man/capture.Rd: - Add files contributed by Arni
	  Magnusson
	  <arnima@u.washington.edu>. As well as some of my own.

2003-08-19 14:58  warnes

	* R/heatmap.2.R: - Copy of local changes.

2003-08-19 14:57  warnes

	* R/heatmap.2.R: - Checkin before re-integrating local changes.

2003-06-19 21:23  warnes

	* R/heatmap.2.R: - Added enhanced heatmap function.

2003-06-09 15:10  warnes

	* man/smartlegend.Rd: - Add help text for smartlegend.

2003-06-09 14:57  warnes

	* R/smartlegend.R: - New function smartlegend().

2003-04-22 17:28  warnes

	* R/plotmeans.R: - Fixeed warning messing caused when 'connect' is
	  a vector.

2003-04-22 15:34  warnes

	* R/barplot2.R: Update from Marc Schwartz, modified by Gregory
	  Warnes:
	  
	  - Modified dim() checks for 'ci.l' and 'ci.u' against 'height'
	  to remove R v1.7.0 if() based error msgs for vector conditions.

2003-04-04 13:49  warnes

	* R/balloonplot.R, man/qqnorm.aov.Rd, trunk/gtools/R/dirichlet.R: -
	  Change occurences of 'T' to 'TRUE'

2003-04-04 13:44  warnes

	* man/textplot.Rd: - Updated to match changes in textplot function:
	  - Added textplot.character
	  - Renamed arguments "col.margin" and "row.margin" to "cmar", and
	  "rmar" so that specifying "col='red'" is possible.
	  - Fixed R CMD check errors
	  - Improve comments in example
	  - Add textplot.matrix example

2003-04-04 13:41  warnes

	* R/textplot.R: - Added textplot.character to handle character
	  strings.
	  - Moved test for vector and matrix arguments to textplot.default.
	  - Renamed arguments "col.margin" and "row.margin" to "cmar", and
	  "rmar" so that specifying "col='red'" is possible.

2003-04-02 22:29  warnes

	* R/textplot.R, man/textplot.Rd: - Added textplot function and
	  friends, as well as documentation.

2003-03-08 16:30  warnes

	* man/balloonplot.Rd: - Forgot to update arglist in \usage section.

2003-03-08 16:22  warnes

	* R/balloonplot.R, man/balloonplot.Rd: - Added parameters for
	  rotation of and amount of space allocated for
	  the row and column labels.

2003-03-07 15:48  warnes

	* trunk/gmodels/R/fast.prcomp.R, R/hist2d.R, R/qqnorm.aov.R,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/RSCompat.S: - Minor
	  changes to code to allow the package to be provided as an
	  S-Plus chapter.

2003-03-07 15:43  warnes

	* R/lowess.R: - Add 'NULL' as the last element of if statement that
	  defines
	  lowess.default so that when the file is sourced, S-Plus doesn't
	  display the function definition.

2003-03-07 15:41  warnes

	* R/lowess.R: - Specify where the defualt lowess function should be
	  found.
	  - Use getFunction in S-Plus instead of 'get'

2003-01-30 21:43  warnes

	* R/barplot2.R, man/barplot2.Rd: - Added argument 'add' to allow
	  for the addition of a barplot to an
	  existing graphic. Default is FALSE

2003-01-20 18:35  warnes

	* R/balloonplot.R, man/balloonplot.Rd: - Updated balloonplot help
	  page.

2003-01-20 17:13  warnes

	* R/wapply.R, man/wapply.Rd: - Updated wapply.R to allow
	  specification of evaluation points when
	  method is 'width' or 'range' using the 'pts' argument.
	  - Updated wapply.Rd to add 'pts' argument
	  - Fixed typos, spelling errors, gramatical errors and lack of
	  clarity
	  in wapply.Rd help text.

2003-01-03 21:34  warnes

	* R/balloonplot.R, man/balloonplot.Rd: - Initial checkin of
	  balloonplot functions and documentation.

2003-01-03 19:23  warnes

	* man/space.Rd: - Added reference to and comparison example of
	  sunflowerplot.
	  - Added code to put example plots on same plot window using
	  par(mfrow=...).

2003-01-02 16:09  warnes

	* R/barplot2.R: - Changed assignment statements that used "=" to
	  "<-" to avoid syntax
	  errors in older versions of the S language.

2003-01-02 16:07  warnes

	* R/lowess.R: - Added wrapper code so that R-specific fiddling
	  won't be executed
	  under S-Plus.

2003-01-02 15:40  warnes

	* R/qqnorm.aov.R, man/qqnorm.aov.Rd: - Renamed first parameter to
	  match qqnorm generic.

2003-01-02 15:14  warnes

	* man/qqnorm.aov.Rd: Added additional help text from Kjeitl.

2002-12-31 19:50  warnes

	* R/qqnorm.aov.R, man/qqnorm.aov.Rd: Initial checkin of qqnorm.aov
	  function and documentation submitted by
	  Kjetil Halvorsen <kjetilh@jupiter.umsanet.edu.bo>.

2002-11-04 14:21  warnes

	* R/barplot2.R, man/barplot2.Rd: Updates from Marc Schwartz:
	  
	  - Updated underlying code to be based upon the new barplot() in R
	  v1.6.1
	  - This now uses the 'axis.lty' and 'border' arguments
	  - In R v1.6.0, R Core introduced a new function called axTicks().
	  This is an R equivalent of the C code for CreateAtVector in
	  plot.c.
	  This now enables me to get the axis tick mark positions
	  consistently
	  when the 'height' related axis is either linear or log. Thus, I
	  can
	  now have consistent tick marks and can plot grid lines in either
	  situation. If 'plot.grid = TRUE' and 'grid.inc' is specified,
	  then
	  I still use pretty() to determine the tick marks and lines.
	  - This code now depends on R 1.6.0 or later.

2002-10-30 02:21  warnes

	* R/plot.lm.R: - Commented out plot.lm() code since recent changes
	  in R have broken it.

2002-10-11 18:02  warnes

	* R/barplot2.R: - Fixed log scale errors in legend() call

2002-10-01 18:16  warnes

	* man/hist2d.Rd: - Added examples of using 'contour' and
	  'filled.contour' for display.

2002-09-24 14:53  warnes

	* R/plotmeans.R: - Changed digits=options("digits") which produces
	  a list of length 1
	  to digits=getOption("digits") which returns a vector of length
	  one.
	  The former was causing an error when passed to round().

2002-09-23 14:27  warnes

	* trunk/gmodels/man/CrossTable.Rd, trunk/gmodels/man/glh.test.Rd,
	  man/barplot2.Rd: - Fixed syntax errors in barplot2.Rd and
	  CrossTable.Rd
	  - Fixed incorrect translation of 'F' (distribution) to 'FALSE' in
	  glh.test.Rd

2002-09-23 13:59  warnes

	* trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/nobs.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gmodels/R/ci.R, trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/glh.test.Rd, R/boxplot.n.R, R/hist2d.R,
	  R/lowess.R, R/residplot.R, man/bandplot.Rd, man/hist2d.Rd,
	  man/lowess.Rd, man/plotCI.Rd, man/space.Rd,
	  trunk/gtools/man/combinations.Rd, trunk/gtools/man/quantcut.Rd: -
	  Modified all files to include CVS Id and Log tags.

2002-09-23 13:38  warnes

	* trunk/gmodels/R/CrossTable.R, trunk/gmodels/man/CrossTable.Rd,
	  R/barplot2.R, man/barplot2.Rd, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/combinations.R: - Added CrossTable() and
	  barplot2() code and docs contributed by Marc Schwartz.
	  - Permit combinations() to be used when r>n provided
	  repeat.allowed=TRUE
	  - Bumped up version number

2002-08-01 19:37  warnes

	* trunk/gmodels/R/ci.R, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
	  R/hist2d.R, R/wapply.R, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/running.R: - Corrected documentation mismatch for
	  ci, ci.default.
	  
	  - Replaced all occurences of '_' for assignment with '<-'.
	  
	  - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
	  with
	  the spelled out version.
	  
	  - Updaded version number and date.

2002-04-09 00:51  warneg

	* trunk/gdata/R/rename.vars.R, trunk/gdata/man/aggregate.table.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/man/glh.test.Rd,
	  R/bandplot.R, R/boxplot.n.R, R/hist2d.R, R/plot.lm.R, R/plotCI.R,
	  R/plotmeans.R, R/residplot.R, R/space.R, R/wapply.R,
	  man/bandplot.Rd, man/boxplot.n.Rd, man/hist2d.Rd,
	  man/plotmeans.Rd, man/space.Rd, man/wapply.Rd,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/combinations.R,
	  trunk/gtools/man/combinations.Rd, trunk/gtools/man/running.Rd:
	  Checkin for version 0.5.3

2002-03-27 20:51  warneg

	* man/lowess.Rd: Added "..." argument to lowess.default.

2002-03-27 19:48  warneg

	* R/lowess.R: - Added code to append "..." to the argument list of
	  lowess.default.
	  
	  - Fixed a wrong default for f in lowess.formula. Was 3, but
	  should
	  have been 2/3.

2002-03-26 21:22  warneg

	* trunk/gdata/man/reorder.Rd, trunk/gmodels/R/ci.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/glh.test.Rd, R/lowess.R, man/lowess.Rd: -
	  Changed methods to include '...' to match the generic.
	  - Updated for version 0.5.1

2002-03-26 19:24  warneg

	* man/hist2d.Rd: Initial checkin.

2002-03-20 04:17  warneg

	* R/plotmeans.R: - Changes to add compatibility with S-Plus 2000

2002-03-20 04:16  warneg

	* R/plotCI.R: - Changes to add compatibility with S-Plus 2000.

2002-03-20 03:48  warneg

	* R/boxplot.n.R: - Updated to work in S-Plus 2000 as well as R.

2002-03-05 16:44  warneg

	* R/plotmeans.R: - Replace "T" with "TRUE". Problems arrive when
	  there is a variable named "T".

2002-02-20 20:09  warneg

	* trunk/gdata/man/rename.vars.Rd, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
	  man/lowess.Rd, man/plotCI.Rd, man/space.Rd: Minor changes, typo
	  and formatting fixes.

2002-02-20 20:06  warneg

	* R/bandplot.R, man/bandplot.Rd: - Generalized to allow
	  specification of the multiples of the standard deviation levels
	  to be plotted (0=mean, 1=1 sd, ..).
	  - Now (invisibly) returnes computed smooths.

2002-02-16 18:16  warneg

	* man/bandplot.Rd: Added bandplot documentation.

2002-02-16 17:58  warneg

	* R/wapply.R: - Fixed Bug: When method=="range", the absolute range
	  of x was being
	  used to compute the relative width instead of the (correct)
	  relative
	  range.

2002-02-16 17:23  warneg

	* R/wapply.R: - Corrected problem removing missing values: The
	  missing values of $x
	  and $y were being removed indepdendently, leaving an uneven
	  number
	  of points in the result.

2002-02-04 23:20  warneg

	* R/space.R: - Add na.rm parameter and make the default TRUE.

2002-02-04 23:19  warneg

	* R/hist2d.R: Initial checkin.

2002-02-04 19:12  warneg

	* R/plotCI.R: - When err="x", 'col' was being used to plot bars,
	  rather than 'barcol'.

2002-02-04 19:09  warneg

	* R/plotCI.R: - fixed typo, when err="x", lty was 'slty' causing an
	  error.

2001-12-12 01:41  warneg

	* man/space.Rd: - Quoted underscore character in my email address.
	  - Added correct keyword.

2001-12-12 01:37  warneg

	* man/plotmeans.Rd: Added documentation for xaxt parameter.

2001-12-12 01:34  warneg

	* R/lowess.R: Updated to explicitly list control arguments to
	  lowess.formula.

2001-12-12 01:34  warneg

	* man/lowess.Rd: Initial checkin. Code copied from R source package
	  and extended.

2001-12-07 23:34  warneg

	* man/wapply.Rd: Fixed an problem where \code was incorrectly
	  delimited by parens
	  rather than curly brackets.

2001-12-07 22:33  warneg

	* R/lowess.R, R/plot.lm.R, R/residplot.R, man/space.Rd: Initial
	  checkin.

2001-12-07 22:24  warneg

	* R/space.R: - Added cvs tags.

2001-12-07 22:23  warneg

	* R/space.R: - Leave first point at center, rather than shifting by
	  s/2 to the left. This looks better when there are more than 2
	  'spaced' points.

2001-12-05 19:49  warneg

	* R/plotmeans.R: - Added ability to use the t-distribution to
	  compute confidence
	  intervals. This is controlled using the 'use.t' parameter.

2001-12-05 19:41  warneg

	* man/plotmeans.Rd: - Added documentation of use.t parameter.

2001-12-05 19:36  warneg

	* man/wapply.Rd: - Clarified how the width of the window is
	  computed when method="nobs".

2001-12-05 19:29  warneg

	* R/wapply.R: - Added a better default for "width" when
	  method="nobs". For this case,
	  width=max(5, length(x)/10).
	  
	  - Allow omission of x values which result in missing y values via
	  'drop.na' parameter.

2001-10-26 02:48  warneg

	* R/plotmeans.R: Added correct handling of 'xaxt="n"'.

2001-10-16 23:15  warneg

	* trunk/gmodels/man/ci.Rd, man/wapply.Rd: Fixed unbalanced brace.

2001-10-16 23:06  warneg

	* man/plotCI.Rd: Added minbar and maxbar parameters.

2001-10-16 23:04  warneg

	* man/plotmeans.Rd: Forgot to add minbar and maxbar to usage
	  section.

2001-10-16 23:03  warneg

	* man/plotmeans.Rd: Added description of minbar and maxbar.

2001-10-16 23:00  warneg

	* R/plotCI.R: - Added minbar and maxbar parameters
	  - Added cvs id and log tags to header

2001-10-16 22:59  warneg

	* R/plotmeans.R: Added cvs id and log tag to file header

2001-10-16 22:57  warneg

	* R/plotmeans.R: Added minbar and maxbar parameters.

2001-10-16 22:35  warneg

	* man/plotmeans.Rd: Added description of minsd parameter.

2001-10-16 22:35  warneg

	* R/plotmeans.R: Added minsd parameter.

2001-09-18 14:15  warneg

	* R/plotCI.R, R/plotmeans.R, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/RSCompat.S: Release 0.3.2

2001-09-01 00:01  warneg

	* man/wapply.Rd, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/running.R, trunk/gtools/man/running.Rd: Release
	  0.3.0

2001-08-31 23:45  warneg

	* R/wapply.R: Used wrong character in header (% instead of #).
	  Fixed.

2001-08-31 23:41  warneg

	* R/bandplot.R: Used wrong comment character (% instead of #) in
	  header. Fixed.

2001-08-25 05:48  warneg

	* R/wapply.R: Initial checkin.

2001-08-25 05:46  warneg

	* man/boxplot.n.Rd, man/plotmeans.Rd: Added CVS header.

2001-08-25 05:45  warneg

	* man/wapply.Rd: Initial Checkin

2001-05-30 13:23  warneg

	* trunk/gmodels, trunk/gmodels/R, trunk/gmodels/R/ci.R,
	  trunk/gmodels/man, trunk/gmodels/man/ci.Rd, ., R, R/boxplot.n.R,
	  R/plotCI.R, R/plotmeans.R, man, man/boxplot.n.Rd, man/plotCI.Rd,
	  man/plotmeans.Rd, trunk/gregmisc, trunk/gregmisc/DESCRIPTION:
	  Initial revision