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\name{rtPCR}
\alias{rtPCR}
\docType{data}
\title{Teratogenesis rtPCR data}
\description{
rtPCR data for experiments investigating a variety of markers for
characterizing teratogenicity.
}
\usage{data(rtPCR)}
\format{
A data frame with 1672 observations on the following 21 variables.
\describe{
\item{PlateID}{a factor with levels \code{A0027002} through
\code{A0054019}}
\item{Test.Substance}{a factor with levels \code{Compound A} through
\code{Compound H}}
\item{Teratogenicity.in.vivo}{a factor with levels \code{Non}
\code{Strong} \code{Weak / Moderate}}
\item{Sample}{a factor with levels \code{Sample 1} - \code{Sample 152}}
\item{Rep..}{a factor with levels \code{Rep 1} - \code{Rep 21}}
\item{Label}{a factor with levels \code{Ctrl}, \code{Neg. Ctrl}
\code{P1} - \code{P9}, \code{No Vehicle Ctrl}, and \code{Pos. Ctrl}}
\item{Conc..ug.ml.}{a numeric vector}
\item{Detector}{a factor with levels \code{ProbeType 1} -
\code{ProbeType 17}}
\item{Avg.delta.Ct}{a numeric vector}
\item{delta.Ct.SD}{a numeric vector}
\item{delta.delta.Ct}{a numeric vector}
\item{RQ}{a numeric vector}
\item{X..RQ}{a numeric vector}
\item{X100..Custom..}{a numeric vector}
\item{X100...Custom..}{a numeric vector}
\item{Custom..}{a numeric vector}
\item{Custom...1}{a numeric vector}
\item{RQ.Min}{a numeric vector}
\item{RQ.Max}{a numeric vector}
\item{Threshold}{a numeric vector}
}
}
\details{
TBA
}
\source{
Anonymized data.
}
\examples{
data(rtPCR)
# same scale
overplot( RQ ~ Conc..ug.ml. | Test.Substance,
data=rtPCR,
subset=Detector=="ProbeType 7" & Conc..ug.ml. > 0,
same.scale=TRUE,
log="xy",
f=3/4,
main="Detector=ProbeType 7",
xlab="Concentration (ug/ml)",
ylab="Relative Gene Quantification"
)
# different scales, but force lower limit to 0.01
overplot( RQ ~ Conc..ug.ml. | Test.Substance,
data=rtPCR,
subset=Detector=="ProbeType 7" & Conc..ug.ml. > 0,
log="xy",
f=3/4,
main="Detector=ProbeType 7",
xlab="Concentration (ug/ml)",
ylab="Relative Gene Quantification",
min.y=0.01
)
}
\keyword{datasets}
|
