1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
|
#include <assert.h>
#include <stdlib.h>
#include <math.h>
#include "gr3.h"
#include "gr.h"
#define SLICE_OFFSET 0.001
static float colormap[768];
static float *getcolormap(void)
{
int i;
for (i = 0; i < 255; i++)
{
int packed_color = 0;
gr_inqcolor(1000 + i, &packed_color);
colormap[3 * i + 0] = (packed_color & 0xff) / 255.0;
colormap[3 * i + 1] = ((packed_color >> 8) & 0xff) / 255.0;
colormap[3 * i + 2] = ((packed_color >> 16) & 0xff) / 255.0;
}
return &(colormap[0]);
}
GR3API void gr3_createxslicemesh(int *mesh, const GR3_MC_DTYPE *data, unsigned int ix, unsigned int dim_x,
unsigned int dim_y, unsigned int dim_z, unsigned int stride_x, unsigned int stride_y,
unsigned int stride_z, double step_x, double step_y, double step_z, double offset_x,
double offset_y, double offset_z)
{
float dtype_max = (1UL << (8 * sizeof(GR3_MC_DTYPE))) - 1;
float *colormap = getcolormap();
unsigned int iy;
unsigned int iz;
unsigned int number_of_vertices = dim_z * dim_y;
unsigned int number_of_indices = (dim_z - 1) * (dim_y - 1) * 2 * 3;
float *vertices = (float *)malloc(number_of_vertices * 3 * sizeof(float));
float *normals = (float *)malloc(number_of_vertices * 3 * sizeof(float));
float *colors = (float *)malloc(number_of_vertices * 3 * sizeof(float));
int *indices = (int *)malloc(number_of_indices * sizeof(int));
assert(vertices);
assert(normals);
assert(colors);
assert(indices);
if (ix >= dim_x)
{
ix = dim_x - 1;
}
for (iz = 0; iz < dim_z; iz++)
{
for (iy = 0; iy < dim_y; iy++)
{
float value = data[ix * stride_x + iy * stride_y + iz * stride_z] / dtype_max;
int color_index1 = floor(value * 255);
int color_index2 = ceil(value * 255);
float alpha = 1 - (value * 255 - color_index1);
float red = colormap[color_index1 * 3 + 0] * alpha + colormap[color_index2 * 3 + 0] * (1 - alpha);
float green = colormap[color_index1 * 3 + 1] * alpha + colormap[color_index2 * 3 + 1] * (1 - alpha);
float blue = colormap[color_index1 * 3 + 2] * alpha + colormap[color_index2 * 3 + 2] * (1 - alpha);
vertices[(iz * dim_y + iy) * 3 + 0] = ix * step_x + offset_x - SLICE_OFFSET;
vertices[(iz * dim_y + iy) * 3 + 1] = iy * step_y + offset_y;
vertices[(iz * dim_y + iy) * 3 + 2] = iz * step_z + offset_z;
normals[(iz * dim_y + iy) * 3 + 0] = 1;
normals[(iz * dim_y + iy) * 3 + 1] = 0;
normals[(iz * dim_y + iy) * 3 + 2] = 0;
colors[(iz * dim_y + iy) * 3 + 0] = red;
colors[(iz * dim_y + iy) * 3 + 1] = green;
colors[(iz * dim_y + iy) * 3 + 2] = blue;
}
}
for (iz = 0; iz < dim_z - 1; iz++)
{
for (iy = 0; iy < dim_y - 1; iy++)
{
indices[(iz * (dim_y - 1) + iy) * 6 + 0] = iz * dim_y + iy;
indices[(iz * (dim_y - 1) + iy) * 6 + 1] = iz * dim_y + iy + 1;
indices[(iz * (dim_y - 1) + iy) * 6 + 2] = (iz + 1) * dim_y + iy;
indices[(iz * (dim_y - 1) + iy) * 6 + 3] = (iz + 1) * dim_y + iy;
indices[(iz * (dim_y - 1) + iy) * 6 + 4] = iz * dim_y + iy + 1;
indices[(iz * (dim_y - 1) + iy) * 6 + 5] = (iz + 1) * dim_y + iy + 1;
}
}
gr3_createindexedmesh(mesh, number_of_vertices, vertices, normals, colors, number_of_indices, indices);
}
GR3API void gr3_createyslicemesh(int *mesh, const GR3_MC_DTYPE *data, unsigned int iy, unsigned int dim_x,
unsigned int dim_y, unsigned int dim_z, unsigned int stride_x, unsigned int stride_y,
unsigned int stride_z, double step_x, double step_y, double step_z, double offset_x,
double offset_y, double offset_z)
{
float dtype_max = (1UL << (8 * sizeof(GR3_MC_DTYPE))) - 1;
float *colormap = getcolormap();
unsigned int ix;
unsigned int iz;
unsigned int number_of_vertices = dim_x * dim_z;
unsigned int number_of_indices = (dim_x - 1) * (dim_z - 1) * 2 * 3;
float *vertices = (float *)malloc(number_of_vertices * 3 * sizeof(float));
float *normals = (float *)malloc(number_of_vertices * 3 * sizeof(float));
float *colors = (float *)malloc(number_of_vertices * 3 * sizeof(float));
int *indices = (int *)malloc(number_of_indices * sizeof(int));
assert(vertices);
assert(normals);
assert(colors);
assert(indices);
if (iy >= dim_y)
{
iy = dim_y - 1;
}
for (iz = 0; iz < dim_z; iz++)
{
for (ix = 0; ix < dim_x; ix++)
{
float value = data[ix * stride_x + iy * stride_y + iz * stride_z] / dtype_max;
int color_index1 = floor(value * 255);
int color_index2 = ceil(value * 255);
float alpha = 1 - (value * 255 - color_index1);
float red = colormap[color_index1 * 3 + 0] * alpha + colormap[color_index2 * 3 + 0] * (1 - alpha);
float green = colormap[color_index1 * 3 + 1] * alpha + colormap[color_index2 * 3 + 1] * (1 - alpha);
float blue = colormap[color_index1 * 3 + 2] * alpha + colormap[color_index2 * 3 + 2] * (1 - alpha);
vertices[(iz * dim_x + ix) * 3 + 0] = ix * step_x + offset_x;
vertices[(iz * dim_x + ix) * 3 + 1] = iy * step_y + offset_y + SLICE_OFFSET;
vertices[(iz * dim_x + ix) * 3 + 2] = iz * step_z + offset_z;
normals[(iz * dim_x + ix) * 3 + 0] = 0;
normals[(iz * dim_x + ix) * 3 + 1] = -1;
normals[(iz * dim_x + ix) * 3 + 2] = 0;
colors[(iz * dim_x + ix) * 3 + 0] = red;
colors[(iz * dim_x + ix) * 3 + 1] = green;
colors[(iz * dim_x + ix) * 3 + 2] = blue;
}
}
for (iz = 0; iz < dim_z - 1; iz++)
{
for (ix = 0; ix < dim_x - 1; ix++)
{
indices[(iz * (dim_x - 1) + ix) * 6 + 0] = iz * dim_x + ix;
indices[(iz * (dim_x - 1) + ix) * 6 + 1] = iz * dim_x + ix + 1;
indices[(iz * (dim_x - 1) + ix) * 6 + 2] = (iz + 1) * dim_x + ix;
indices[(iz * (dim_x - 1) + ix) * 6 + 3] = (iz + 1) * dim_x + ix;
indices[(iz * (dim_x - 1) + ix) * 6 + 4] = iz * dim_x + ix + 1;
indices[(iz * (dim_x - 1) + ix) * 6 + 5] = (iz + 1) * dim_x + ix + 1;
}
}
gr3_createindexedmesh(mesh, number_of_vertices, vertices, normals, colors, number_of_indices, indices);
}
GR3API void gr3_createzslicemesh(int *mesh, const GR3_MC_DTYPE *data, unsigned int iz, unsigned int dim_x,
unsigned int dim_y, unsigned int dim_z, unsigned int stride_x, unsigned int stride_y,
unsigned int stride_z, double step_x, double step_y, double step_z, double offset_x,
double offset_y, double offset_z)
{
float dtype_max = (1UL << (8 * sizeof(GR3_MC_DTYPE))) - 1;
float *colormap = getcolormap();
unsigned int ix;
unsigned int iy;
unsigned int number_of_vertices = dim_x * dim_y;
unsigned int number_of_indices = (dim_x - 1) * (dim_y - 1) * 2 * 3;
float *vertices = (float *)malloc(number_of_vertices * 3 * sizeof(float));
float *normals = (float *)malloc(number_of_vertices * 3 * sizeof(float));
float *colors = (float *)malloc(number_of_vertices * 3 * sizeof(float));
int *indices = (int *)malloc(number_of_indices * sizeof(int));
assert(vertices);
assert(normals);
assert(colors);
assert(indices);
if (iz >= dim_z)
{
iz = dim_z - 1;
}
for (iy = 0; iy < dim_y; iy++)
{
for (ix = 0; ix < dim_x; ix++)
{
float value = data[ix * stride_x + iy * stride_y + iz * stride_z] / dtype_max;
int color_index1 = floor(value * 255);
int color_index2 = ceil(value * 255);
float alpha = 1 - (value * 255 - color_index1);
float red = colormap[color_index1 * 3 + 0] * alpha + colormap[color_index2 * 3 + 0] * (1 - alpha);
float green = colormap[color_index1 * 3 + 1] * alpha + colormap[color_index2 * 3 + 1] * (1 - alpha);
float blue = colormap[color_index1 * 3 + 2] * alpha + colormap[color_index2 * 3 + 2] * (1 - alpha);
vertices[(iy * dim_x + ix) * 3 + 0] = ix * step_x + offset_x;
vertices[(iy * dim_x + ix) * 3 + 1] = iy * step_y + offset_y;
vertices[(iy * dim_x + ix) * 3 + 2] = iz * step_z + offset_z + SLICE_OFFSET;
normals[(iy * dim_x + ix) * 3 + 0] = 0;
normals[(iy * dim_x + ix) * 3 + 1] = 0;
normals[(iy * dim_x + ix) * 3 + 2] = 1;
colors[(iy * dim_x + ix) * 3 + 0] = red;
colors[(iy * dim_x + ix) * 3 + 1] = green;
colors[(iy * dim_x + ix) * 3 + 2] = blue;
}
}
for (iy = 0; iy < dim_y - 1; iy++)
{
for (ix = 0; ix < dim_x - 1; ix++)
{
indices[(iy * (dim_x - 1) + ix) * 6 + 0] = iy * dim_x + ix;
indices[(iy * (dim_x - 1) + ix) * 6 + 1] = iy * dim_x + ix + 1;
indices[(iy * (dim_x - 1) + ix) * 6 + 2] = (iy + 1) * dim_x + ix;
indices[(iy * (dim_x - 1) + ix) * 6 + 3] = (iy + 1) * dim_x + ix;
indices[(iy * (dim_x - 1) + ix) * 6 + 4] = iy * dim_x + ix + 1;
indices[(iy * (dim_x - 1) + ix) * 6 + 5] = (iy + 1) * dim_x + ix + 1;
}
}
gr3_createindexedmesh(mesh, number_of_vertices, vertices, normals, colors, number_of_indices, indices);
}
GR3API void gr3_drawxslicemesh(const GR3_MC_DTYPE *data, unsigned int ix, unsigned int dim_x, unsigned int dim_y,
unsigned int dim_z, unsigned int stride_x, unsigned int stride_y, unsigned int stride_z,
double step_x, double step_y, double step_z, double offset_x, double offset_y,
double offset_z)
{
int alpha_mode, mesh = 0;
float position[3] = {0, 0, 0};
float direction[3] = {0, 0, 1};
float up[3] = {0, 1, 0};
float color[3] = {1, 1, 1};
float scales[3] = {1, 1, 1};
gr3_getalphamode(&alpha_mode);
gr3_createxslicemesh(&mesh, data, ix, dim_x, dim_y, dim_z, stride_x, stride_y, stride_z, step_x, step_y, step_z,
offset_x, offset_y, offset_z);
gr3_setalphamode(GR3_TRANSPARENCY_OPAQUE);
gr3_drawmesh(mesh, 1, position, direction, up, color, scales);
gr3_setalphamode(alpha_mode);
gr3_deletemesh(mesh);
}
GR3API void gr3_drawyslicemesh(const GR3_MC_DTYPE *data, unsigned int iy, unsigned int dim_x, unsigned int dim_y,
unsigned int dim_z, unsigned int stride_x, unsigned int stride_y, unsigned int stride_z,
double step_x, double step_y, double step_z, double offset_x, double offset_y,
double offset_z)
{
int alpha_mode, mesh = 0;
float position[3] = {0, 0, 0};
float direction[3] = {0, 0, 1};
float up[3] = {0, 1, 0};
float color[3] = {1, 1, 1};
float scales[3] = {1, 1, 1};
gr3_getalphamode(&alpha_mode);
gr3_createyslicemesh(&mesh, data, iy, dim_x, dim_y, dim_z, stride_x, stride_y, stride_z, step_x, step_y, step_z,
offset_x, offset_y, offset_z);
gr3_setalphamode(GR3_TRANSPARENCY_OPAQUE);
gr3_drawmesh(mesh, 1, position, direction, up, color, scales);
gr3_setalphamode(alpha_mode);
gr3_deletemesh(mesh);
}
GR3API void gr3_drawzslicemesh(const GR3_MC_DTYPE *data, unsigned int iz, unsigned int dim_x, unsigned int dim_y,
unsigned int dim_z, unsigned int stride_x, unsigned int stride_y, unsigned int stride_z,
double step_x, double step_y, double step_z, double offset_x, double offset_y,
double offset_z)
{
int alpha_mode, mesh = 0;
float position[3] = {0, 0, 0};
float direction[3] = {0, 0, 1};
float up[3] = {0, 1, 0};
float color[3] = {1, 1, 1};
float scales[3] = {1, 1, 1};
gr3_getalphamode(&alpha_mode);
gr3_createzslicemesh(&mesh, data, iz, dim_x, dim_y, dim_z, stride_x, stride_y, stride_z, step_x, step_y, step_z,
offset_x, offset_y, offset_z);
gr3_setalphamode(GR3_TRANSPARENCY_OPAQUE);
gr3_drawmesh(mesh, 1, position, direction, up, color, scales);
gr3_setalphamode(alpha_mode);
gr3_deletemesh(mesh);
}
|
