1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387
|
#! /usr/bin/env python
# -*- coding: utf-8 -*-
#
# graph_tool -- a general graph manipulation python module
#
# Copyright (C) 2006-2025 Tiago de Paula Peixoto <tiago@skewed.de>
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU Lesser General Public License as published by the Free
# Software Foundation; either version 3 of the License, or (at your option) any
# later version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
# details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
import sys
import os
import datetime
# For OMP performance
os.environ["OMP_WAIT_POLICY"] = "passive"
# If your extensions are in another directory, add it here. If the directory
# is relative to the documentation root, use os.path.abspath to make it
# absolute, like shown here.
sys.path.append(os.path.abspath('.'))
# General configuration
# ---------------------
# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = [
'sphinx.ext.autodoc',
'sphinx.ext.doctest',
'sphinx.ext.intersphinx',
'sphinx.ext.mathjax',
'sphinx.ext.autosummary',
'numpydoc',
'sphinx.ext.extlinks',
'sphinx.ext.viewcode',
'extlinks_fancy',
'sphinxext.opengraph',
'sphinx_copybutton',
'sphinx_favicon',
'myst_parser',
'sphinxcontrib.bibtex',
'sphinxcontrib.video'
]
myst_enable_extensions = [
"amsmath",
"attrs_inline",
"colon_fence",
"deflist",
"dollarmath",
"fieldlist",
"html_admonition",
"html_image",
"linkify",
"replacements",
"smartquotes",
"strikethrough",
"substitution",
"tasklist",
]
bibtex_bibfiles = ['refs.bib']
mathjax_path = "node_modules/mathjax/es5/tex-chtml-full.js"
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# The suffix of source filenames.
source_suffix = {'.rst': 'restructuredtext'}
# The encoding of source files.
source_encoding = 'utf-8'
# The master toctree document.
master_doc = 'index'
# General information about the project.
project = u'graph-tool'
year = datetime.datetime.now().year
copyright = f'2006-{year}, Tiago de Paula Peixoto <tiago@skewed.de>'
author = 'Tiago de Paula Peixoto'
# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
from graph_tool import __version__ as gt_version
version = gt_version.split()[0]
# The full version, including alpha/beta/rc tags.
release = gt_version.split()[0]
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#language = None
# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#today = ''
# Else, today_fmt is used as the format for a strftime call.
#today_fmt = '%B %d, %Y'
# List of documents that shouldn't be included in the build.
#unused_docs = []
# List of directories, relative to source directory, that shouldn't be searched
# for source files.
exclude_trees = ['.build']
exclude_patterns = ['**/_*.rst', '**/_*.md', 'build/html/_static/*/*.md']
# The reST default role (used for this markup: `text`) to use for all documents.
#default_role = None
# If true, '()' will be appended to :func: etc. cross-reference text.
#add_function_parentheses = True
# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#add_module_names = True
# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#show_authors = False
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'
# doctest
import os
doctest_global_setup = open("pyenv.py").read().replace("___DOCDIR___",
os.getcwd())
#doctest_global_setup += "os.chdir('%s')\n" % os.getcwd()
# Options for HTML outputs
# -----------------------
# The style sheet to use for HTML and HTML Help pages. A file of that name
# must exist either in Sphinx' static/ path, or in one of the custom paths
# given in html_static_path.
# html_style = 'default.css'
html_theme = "sphinx_book_theme"
# Set up the version switcher.
if "dev" in version:
switcher_version = "dev"
else:
switcher_version = f"{version}"
html_theme_options = {
"gitlab_url": "https://git.skewed.de/count0/graph-tool",
"icon_links": [
{
"name": "Mastodon",
"url": "https://social.skewed.de/@graph_tool",
"icon": "fa-brands fa-mastodon",
},
{
"name": "Bluesky",
"url": "https://bsky.app/profile/graph-tool.skewed.de",
"icon": "fa-brands fa-bluesky",
},
{
"name": "Discourse",
"url": "https://forum.skewed.de/c/graph-tool/5",
"icon": "fa-brands fa-discourse",
},
{
"name": "graph-tool",
"url": "https://graph-tool.skewed.de",
"icon": "_static/graph-tool-logo-circle.svg",
"type": "local",
},
],
"primary_sidebar_end": ["indices.html"],
"use_edit_page_button": True,
"home_page_in_toc": True,
"show_navbar_depth": 2,
"show_toc_level": 4,
'use_sidenotes': False,
"logo": {
"image_light": "_static/graph-tool-logo-circle.svg",
"image_dark": "_static/graph-tool-logo-circle.svg",
"text": f"""graph-tool documentation<br/>({version})"""
},
"switcher": {
"version_match": switcher_version,
"json_url": "https://graph-tool.skewed.de/static/docs/versions.json",
},
"show_version_warning_banner": True,
}
html_static_path = ["_static"]
html_css_files = ["custom.css", "fonts.css"]
html_context = {
"gitlab_url": "https://git.skewed.de",
"gitlab_user": "count0",
"gitlab_repo": "graph-tool",
"gitlab_version": "master",
"doc_path": "/doc"
}
navigation_with_keys = False
html_logo = "_static/graph-tool-logo-circle.svg"
# The name for this set of Sphinx documents. If None, it defaults to
# "<project> v<release> documentation".
#html_title = None
# A shorter title for the navigation bar. Default is the same as html_title.
#html_short_title = None
# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#html_logo = None
# The name of an image file (within the static path) to use as favicon of the
# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#html_favicon = "graph-tool-logo-circle.svg"
favicons = [
{"href": "graph-tool-logo-circle.svg"},
]
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
html_last_updated_fmt = '%b %d, %Y'
# Custom sidebar templates, maps document names to template names.
#html_sidebars = {}
html_sidebars = {
"**": ["navbar-logo.html", "version-switcher", "icon-links.html",
"search-button-field.html", "sbt-sidebar-nav.html"]
}
# Additional templates that should be rendered to pages, maps page names to
# template names.
#html_additional_pages = {}
# If false, no module index is generated.
#html_use_modindex = True
# If false, no index is generated.
#html_use_index = True
# If true, the index is split into individual pages for each letter.
#html_split_index = False
# If true, the reST sources are included in the HTML build as _sources/<name>.
html_copy_source = True
# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it. The value of this option must be the
# base URL from which the finished HTML is served.
html_use_opensearch = 'http://graph-tool.skewed.de/docs/'
# If nonempty, this is the file name suffix for HTML files (e.g. ".xhtml").
#html_file_suffix = ''
# Output file base name for HTML help builder.
htmlhelp_basename = 'graph-tooldoc'
# Example configuration for intersphinx: refer to the Python standard library.
intersphinx_mapping = {'python': ('/usr/share/doc/python3/html/', None),
'numpy': ('/usr/share/doc/python-numpy-doc/html/', None),
'scipy': ('/usr/share/doc/python-scipy-doc/html/', None),
'matplotlib': ('/usr/share/doc/python-matplotlib-doc/html/', None),
'cairo': ('/usr/share/doc/python3-cairo/html/', None),
'ipython': ('/usr/share/doc/python-ipython-doc/html/', None),
'panda': ('/usr/share/doc/python-pandas-doc/html/', None),
'basemap': ('/usr/share/doc/python-mpltoolkits.basemap-doc/html/', None),
'myst': ('/usr/share/doc/python3-myst-parser/', None)}
extlinks_fancy = {'issue': (['https://git.skewed.de/count0/graph-tool/issues/{0}'],
['issue #{0}']),
'doi': (['https://dx.doi.org/{0}',
'https://sci-hub.ru/{0}',
'https://scihub22266oqcxt.onion/{0}'],
['DOI: {0}', "sci-hub", "@tor"]),
'arxiv': (['https://arxiv.org/abs/{0}'], ['arXiv: {0}']),
'ns': (['https://networks.skewed.de/net/{0}'], ['{0}'])}
autodoc_default_options = {
'members': False,
'member-order': 'bysource',
'undoc-members': False
}
autosummary_gerenerate = True
autosummary_imported_members = True
autosummary_ignore_module_all = True
numpydoc_show_class_members = False
autodoc_docstring_signature = False
autoclass_content = 'both'
imported_members = True
add_module_names = True
toc_object_entries_show_parents = "hide"
ogp_site_url = "https://graph-tool.skewed.de/static/docs/stable/index.html"
ogp_image = "https://graph-tool.skewed.de/static/img/graph-tool-logo.png"
ogp_description_length = 300
ogp_enable_meta_description = True
def linkcode_resolve(domain, info):
if domain != 'py':
return None
if not info['module']:
return None
modname = info['module'].replace('.', '/')
return "https://git.skewed.de/count0/graph-tool/tree/master/src/%s/__init__.py" % modname
nitpicky = True
def skip(app, what, name, obj, would_skip, options):
if name.startswith("_"):
return True
return would_skip
def setup(app):
app.connect("autodoc-skip-member", skip)
import pybtex.plugin
from pybtex.style.formatting.unsrt import Style as UnsrtStyle
from pybtex.style.template import (
field, first_of, href, join, names, optional, optional_field, sentence,
tag, together, words
)
class MyStyle(UnsrtStyle):
def format_doi(self, e):
# based on urlbst format.doi
return join[href[
join[
'https://doi.org/',
field('doi', raw=True)
],
join[
'doi:',
field('doi', raw=True)
]
], ", ", href[
join[
'https://sci-hub.ru/',
field('doi', raw=True)
],
'[sci-hub]'
]]
def format_web_refs(self, e):
return sentence[
optional[self.format_url(e)],
optional[self.format_eprint(e)],
optional[self.format_pubmed(e)],
optional[self.format_doi(e)]]
def format_url(self, e):
return ""
pybtex.plugin.register_plugin('pybtex.style.formatting', 'mystyle', MyStyle)
bibtex_default_style = 'mystyle'
|