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.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.4.
.TH GRAPHLAN_ANNOTATE "1" "June 2016" "graphlan_annotate 1.1" "User Commands"
.SH NAME
graphlan_annotate \- GraPhlAn annotate module
.SH SYNOPSIS
.B graphlan_annotate
[\-h] [\-\-annot annotation_file] [\-v]
input_tree [output_tree]
.SH DESCRIPTION
GraPhlAn is a software tool for producing high-quality circular
representations of taxonomic and phylogenetic trees. It focuses on
concise, integrative, informative, and publication-ready representations
of phylogenetically- and taxonomically-driven investigation.
.P
graphlan_annotate is the annotate module of graphlan(1).
.SH OPTIONS
.SS "positional arguments:"
.TP
input_tree
the input tree in Newick, Nexus, PhyloXML or plain
text format
.TP
output_tree
the output tree in PhyloXML format containing the
newly added annotations. If not specified, the input
tree file will be overwritten
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-annot\fR annotation_file
specify the annotation file
.TP
\fB\-v\fR, \fB\-\-version\fR
Prints the current GraPhlAn version and exit
.SH SEE ALSO
graphlan(1)
.SH AUTHOR
The software was written by Nicola Segata <nsegata@hsph.harvard.edu>
.P
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
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