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branch_bracket_width 0.5
branch_bracket_depth 0.75
class1 clade_marker_color #FF0000
class1 clade_marker_size 35
class1 class_label Genomes containing gene X
class2 clade_marker_color #0000FF
class2 clade_marker_size 35
class2 annotation_background_color #0000FF
class2 class_label Clades in which X is a core gene
clade_marker_size 10
branch_thickness 0.5
Bacill.Bacillale class class1
Bacill.Bacillale.Staphylococcaceae.Gemella class class1
Bacill.Bacillale.Staphylococcaceae.Jeotgalicoccus class class1
Bacill.Bacillale.Staphylococcaceae.Macrococcus class class1
Bacill.Bacillale.Staphylococcaceae.Nosocomiicoccus class class1
Bacill.Bacillale.Staphylococcaceae.Salinicoccus class class1
Bacill.Bacillale.Staphylococcaceae.Staphylococcus class class1
Bacill.Bacillale.Staphylococcaceae.unclassified class class1
Bacill.Bacillale.Staphylococcaceae.Macrococcus class class1
Bacill.Bacillale.unclassified class class1
Bacill.Bacillale.Thermoactinomycetaceae.Planifilum class class1
Bacill.Bacillale.Thermoactinomycetaceae.Thermoactinomyces class class1
Bacill.Bacillale.Thermoactinomycetaceae.unclassified class class1
Bacilli.Lactobacillales.Aerococcaceae.Eremococcus class class1
Bacilli.Lactobacillales.Aerococcaceae.Facklamia class class1
Bacilli.Lactobacillales.Carnobacteriaceae.Alloiococcus class class1
Bacilli.Lactobacillales.Carnobacteriaceae.Carnobacterium class class1
Bacilli.Lactobacillales.Carnobacteriaceae.Desemzia class class1
Bacilli.Lactobacillales.Lactobacillaceae.Lactobacillus class class1
Bacilli.Lactobacillales.Lactobacillaceae.Pediococcus class class1
Clostrid.Clostridiales.Lachnospiraceae.Dorea class class1
Clostridia.Clostridiales.Incertae_Sedis_XI.Finegoldia class class1
Clostridia.Clostridiales.Incertae_Sedis_XI.Gallicola class class1
Clostridia.Clostridiales.Incertae_Sedis_XI.Helcococcus class class1
Clostridia.Clostridiales.Incertae_Sedis_XI.Peptoniphilus class class1
Clostridia.Clostridiales.Incertae_Sedis_XVIII.Symbiobacterium class class1
Clostrid.Clostridiales.Lachnospiraceae.Butyrivibrio class class1
Clostrid.Clostridiales.Lachnospiraceae.Coprococcus class class1
Clostrid.Clostridiales.Lachnospiraceae.Oribacterium class class1
Clostrid.Clostridiales.Lachnospiraceae.Parasporobacterium class class1
Bacilli.Lactobacillales.Aerococcaceae.Globicatella class class1
Clostridi.Clostridiales.Ruminococcaceae.Butyricicoccus class class1
Clostridi.Clostridiales.Ruminococcaceae.Papillibacter class class1
Clostridi.Clostridiale.Veillonellaceae.Selenomonas class class1
Clostrid.Clostridiales.Peptostreptococcaceae.Filifactor class class1
Clostridi.Clostridiale.Veillonellaceae.Sporomusa class class1
Clostridia.Thermoanaerobacterales.Thermoanaerobacteraceae.Thermoanaerobacterium class class1
Clostrid.Clostridiales.Peptostreptococcaceae.Sporacetigenium class class1
Clostrid.Clostridiales.Lachnospiraceae.Roseburia class class1
Clostrid.Clostridiales.Lachnospiraceae.Shuttleworthia class class1
Bacill.Bacillale.Staphylococcaceae class class2
Bacill.Bacillale.Thermoactinomycetaceae class class2
Bacill.Bacillale class class2
#Bacill.Bacillale annotation_background_color #0000FF
Bacill.Bacillale annotation Y: X is a clade-specific core gene for clade X
Bacill.Bacillale.Staphylococcaceae annotation Z: X is a core gene in clade Z
Bacill.Bacillale.Thermoactinomycetaceae annotation K: X is a core gene in clade X
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