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"""!
@package wxplot.profile
@brief Profiling using PyPlot
Classes:
- profile::ProfileFrame
- profile::ProfileToolbar
(C) 2011-2012 by the GRASS Development Team
This program is free software under the GNU General Public License
(>=v2). Read the file COPYING that comes with GRASS for details.
@author Michael Barton, Arizona State University
"""
import os
import sys
import math
import wx
import wx.lib.plot as plot
import grass.script as grass
try:
import numpy
except ImportError:
msg = _("This module requires the NumPy module, which could not be "
"imported. It probably is not installed (it's not part of the "
"standard Python distribution). See the Numeric Python site "
"(http://numpy.scipy.org) for information on downloading source or "
"binaries.")
print >> sys.stderr, "wxplot.py: " + msg
from wxplot.base import BasePlotFrame, PlotIcons
from gui_core.toolbars import BaseToolbar, BaseIcons
from wxplot.dialogs import ProfileRasterDialog, PlotStatsFrame
from core.gcmd import RunCommand, GWarning, GError, GMessage
class ProfileFrame(BasePlotFrame):
"""!Mainframe for displaying profile of one or more raster maps. Uses wx.lib.plot.
"""
def __init__(self, parent, id = wx.ID_ANY, style = wx.DEFAULT_FRAME_STYLE,
size = wx.Size(700, 400),
rasterList = [], **kwargs):
BasePlotFrame.__init__(self, parent, size = size, **kwargs)
self.toolbar = ProfileToolbar(parent = self)
self.SetToolBar(self.toolbar)
self.SetTitle(_("GRASS Profile Analysis Tool"))
#
# Init variables
#
self.rasterList = rasterList
self.plottype = 'profile'
self.coordstr = '' # string of coordinates for r.profile
self.seglist = [] # segment endpoint list
self.ppoints = '' # segment endpoints data
self.transect_length = 0.0 # total transect length
self.ptitle = _('Profile of') # title of window
self.colorList = ["blue", "red", "green", "yellow", "magenta", "cyan",
"aqua", "black", "grey", "orange", "brown", "purple", "violet",
"indigo"]
self._initOpts()
if len(self.rasterList) > 0: # set raster name(s) from layer manager if a map is selected
self.raster = self.InitRasterOpts(self.rasterList, self.plottype)
else:
self.raster = {}
# determine units (axis labels)
if self.parent.Map.projinfo['units'] != '':
self.xlabel = _('Distance (%s)') % self.parent.Map.projinfo['units']
else:
self.xlabel = _("Distance along transect")
self.ylabel = _("Cell values")
def _initOpts(self):
"""!Initialize plot options
"""
self.InitPlotOpts('profile')
def OnDrawTransect(self, event):
"""!Draws transect to profile in map display
"""
self.mapwin.polycoords = []
self.seglist = []
self.mapwin.ClearLines(self.mapwin.pdc)
self.ppoints = ''
self.parent.SetFocus()
self.parent.Raise()
self.mapwin.mouse['use'] = 'profile'
self.mapwin.mouse['box'] = 'line'
self.mapwin.pen = wx.Pen(colour = 'Red', width = 2, style = wx.SHORT_DASH)
self.mapwin.polypen = wx.Pen(colour = 'dark green', width = 2, style = wx.SHORT_DASH)
self.mapwin.SetCursor(self.Parent.cursors["cross"])
def OnSelectRaster(self, event):
"""!Select raster map(s) to profile
"""
dlg = ProfileRasterDialog(parent = self)
dlg.CenterOnParent()
if dlg.ShowModal() == wx.ID_OK:
self.rasterList = dlg.rasterList
self.raster = self.InitRasterOpts(self.rasterList, self.plottype)
# plot profile
if len(self.mapwin.polycoords) > 0 and len(self.rasterList) > 0:
self.OnCreateProfile(event = None)
dlg.Destroy()
def SetupProfile(self):
"""!Create coordinate string for profiling. Create segment list for
transect segment markers.
"""
#
# create list of coordinate points for r.profile
#
dist = 0
cumdist = 0
self.coordstr = ''
lasteast = lastnorth = None
region = grass.region()
insideRegion = True
if len(self.mapwin.polycoords) > 0:
for point in self.mapwin.polycoords:
if not (region['w'] <= point[0] <= region['e'] and region['s'] <= point[1] <= region['n']):
insideRegion = False
# build string of coordinate points for r.profile
if self.coordstr == '':
self.coordstr = '%d,%d' % (point[0], point[1])
else:
self.coordstr = '%s,%d,%d' % (self.coordstr, point[0], point[1])
if not insideRegion:
GWarning(message = _("Not all points of profile lie inside computational region."),
parent = self)
if len(self.rasterList) == 0:
return
# title of window
self.ptitle = _('Profile of')
#
# create list of coordinates for transect segment markers
#
if len(self.mapwin.polycoords) > 0:
self.seglist = []
for point in self.mapwin.polycoords:
# get value of raster cell at coordinate point
ret = RunCommand('r.what',
parent = self,
read = True,
input = self.rasterList[0],
east_north = '%d,%d' % (point[0],point[1]))
val = ret.splitlines()[0].split('|')[3]
if val == None or val == '*': continue
val = float(val)
# calculate distance between coordinate points
if lasteast and lastnorth:
dist = math.sqrt(math.pow((lasteast-point[0]),2) + math.pow((lastnorth-point[1]),2))
cumdist += dist
#store total transect length
self.transect_length = cumdist
# build a list of distance,value pairs for each segment of transect
self.seglist.append((cumdist,val))
lasteast = point[0]
lastnorth = point[1]
# delete extra first segment point
try:
self.seglist.pop(0)
except:
pass
#
# create datalist of dist/value pairs and y labels for each raster map
#
self.ylabel = ''
i = 0
for r in self.raster.iterkeys():
self.raster[r]['datalist'] = []
datalist = self.CreateDatalist(r, self.coordstr)
if len(datalist) > 0:
self.raster[r]['datalist'] = datalist
# update ylabel to match units if they exist
if self.raster[r]['units'] != '':
self.ylabel += '%s (%d),' % (r['units'], i)
i += 1
# update title
self.ptitle += ' %s ,' % r.split('@')[0]
self.ptitle = self.ptitle.rstrip(',')
if self.ylabel == '':
self.ylabel = _('Raster values')
else:
self.ylabel = self.ylabel.rstrip(',')
def CreateDatalist(self, raster, coords):
"""!Build a list of distance, value pairs for points along transect using r.profile
"""
datalist = []
# keep total number of transect points to 500 or less to avoid
# freezing with large, high resolution maps
region = grass.region()
curr_res = min(float(region['nsres']),float(region['ewres']))
transect_rec = 0
if self.transect_length / curr_res > 500:
transect_res = self.transect_length / 500
else: transect_res = curr_res
ret = RunCommand("r.profile",
parent = self,
input = raster,
profile = coords,
res = transect_res,
null = "nan",
quiet = True,
read = True)
if not ret:
return []
for line in ret.splitlines():
dist, elev = line.strip().split(' ')
if dist == None or dist == '' or dist == 'nan' or \
elev == None or elev == '' or elev == 'nan':
continue
dist = float(dist)
elev = float(elev)
datalist.append((dist,elev))
return datalist
def OnCreateProfile(self, event):
"""!Main routine for creating a profile. Uses r.profile to
create a list of distance,cell value pairs. This is passed to
plot to create a line graph of the profile. If the profile
transect is in multiple segments, these are drawn as
points. Profile transect is drawn, using methods in mapdisp.py
"""
if len(self.mapwin.polycoords) == 0 or len(self.rasterList) == 0:
dlg = wx.MessageDialog(parent = self,
message = _('You must draw a transect to profile in the map display window.'),
caption = _('Nothing to profile'),
style = wx.OK | wx.ICON_INFORMATION | wx.CENTRE)
dlg.ShowModal()
dlg.Destroy()
return
self.mapwin.SetCursor(self.parent.cursors["default"])
self.SetCursor(self.parent.cursors["default"])
self.SetGraphStyle()
self.SetupProfile()
p = self.CreatePlotList()
self.DrawPlot(p)
# reset transect
self.mapwin.mouse['begin'] = self.mapwin.mouse['end'] = (0.0,0.0)
self.mapwin.mouse['use'] = 'pointer'
self.mapwin.mouse['box'] = 'point'
def CreatePlotList(self):
"""!Create a plot data list from transect datalist and
transect segment endpoint coordinates.
"""
# graph the distance, value pairs for the transect
self.plotlist = []
# Add segment marker points to plot data list
if len(self.seglist) > 0 :
self.ppoints = plot.PolyMarker(self.seglist,
legend = ' ' + self.properties['marker']['legend'],
colour = wx.Colour(self.properties['marker']['color'][0],
self.properties['marker']['color'][1],
self.properties['marker']['color'][2],
255),
size = self.properties['marker']['size'],
fillstyle = self.ptfilldict[self.properties['marker']['fill']],
marker = self.properties['marker']['type'])
self.plotlist.append(self.ppoints)
# Add profile distance/elevation pairs to plot data list for each raster profiled
for r in self.rasterList:
col = wx.Colour(self.raster[r]['pcolor'][0],
self.raster[r]['pcolor'][1],
self.raster[r]['pcolor'][2],
255)
self.raster[r]['pline'] = plot.PolyLine(self.raster[r]['datalist'],
colour = col,
width = self.raster[r]['pwidth'],
style = self.linestyledict[self.raster[r]['pstyle']],
legend = self.raster[r]['plegend'])
self.plotlist.append(self.raster[r]['pline'])
if len(self.plotlist) > 0:
return self.plotlist
else:
return None
def Update(self):
"""!Update profile after changing options
"""
self.SetGraphStyle()
p = self.CreatePlotList()
self.DrawPlot(p)
def SaveProfileToFile(self, event):
"""!Save r.profile data to a csv file
"""
dlg = wx.FileDialog(parent = self,
message = _("Choose prefix for file(s) where to save profile values..."),
defaultDir = os.getcwd(),
wildcard = _("Comma separated value (*.csv)|*.csv"), style = wx.FD_SAVE)
pfile = []
if dlg.ShowModal() == wx.ID_OK:
path = dlg.GetPath()
for r in self.rasterList:
pfile.append(path + '_' + str(r.replace('@', '_')) + '.csv')
if os.path.exists(pfile[-1]):
dlgOv = wx.MessageDialog(self,
message = _("File <%s> already exists. "
"Do you want to overwrite this file?") % pfile[-1],
caption = _("Overwrite file?"),
style = wx.YES_NO | wx.YES_DEFAULT | wx.ICON_QUESTION)
if dlgOv.ShowModal() != wx.ID_YES:
pfile.pop()
dlgOv.Destroy()
continue
try:
fd = open(pfile[-1], "w")
except IOError, e:
GError(parent = self,
message = _("Unable to open file <%(file)s> for "
"writing.\nReason: %(e)s") % {'file': pfile[-1],
'e': e})
dlg.Destroy()
return
for datapair in self.raster[r]['datalist']:
fd.write('%d,%d\n' % (float(datapair[0]),float(datapair[1])))
fd.close()
dlg.Destroy()
if pfile:
message = _("%(l)d files created:\n%(p)s") % {'l': len(pfile),
'p':'\n'.join(pfile)}
else:
message = _("No files generated.")
GMessage(parent = self, message = message)
def OnStats(self, event):
"""!Displays regression information in messagebox
"""
message = []
title = _('Statistics for Profile(s)')
for r in self.raster.iterkeys():
try:
rast = r.split('@')[0]
statstr = 'Profile of %s\n\n' % rast
iterable = (i[1] for i in self.raster[r]['datalist'])
a = numpy.fromiter(iterable, numpy.float)
statstr += 'n: %f\n' % a.size
statstr += 'minimum: %f\n' % numpy.amin(a)
statstr += 'maximum: %f\n' % numpy.amax(a)
statstr += 'range: %f\n' % numpy.ptp(a)
statstr += 'mean: %f\n' % numpy.mean(a)
statstr += 'standard deviation: %f\n' % numpy.std(a)
statstr += 'variance: %f\n' % numpy.var(a)
cv = numpy.std(a)/numpy.mean(a)
statstr += 'coefficient of variation: %f\n' % cv
statstr += 'sum: %f\n' % numpy.sum(a)
statstr += 'median: %f\n' % numpy.median(a)
statstr += 'distance along transect: %f\n\n' % self.transect_length
message.append(statstr)
except:
pass
stats = PlotStatsFrame(self, id = wx.ID_ANY, message = message,
title = title)
if stats.Show() == wx.ID_CLOSE:
stats.Destroy()
class ProfileToolbar(BaseToolbar):
"""!Toolbar for profiling raster map
"""
def __init__(self, parent):
BaseToolbar.__init__(self, parent)
self.InitToolbar(self._toolbarData())
# realize the toolbar
self.Realize()
def _toolbarData(self):
"""!Toolbar data"""
return self._getToolbarData((('addraster', BaseIcons["addRast"],
self.parent.OnSelectRaster),
('transect', PlotIcons["transect"],
self.parent.OnDrawTransect),
(None, ),
('draw', PlotIcons["draw"],
self.parent.OnCreateProfile),
('erase', BaseIcons["erase"],
self.parent.OnErase),
('drag', BaseIcons['pan'],
self.parent.OnDrag),
('zoom', BaseIcons['zoomIn'],
self.parent.OnZoom),
('unzoom', BaseIcons['zoomBack'],
self.parent.OnRedraw),
(None, ),
('statistics', PlotIcons['statistics'],
self.parent.OnStats),
('datasave', PlotIcons["save"],
self.parent.SaveProfileToFile),
('image', BaseIcons["saveFile"],
self.parent.SaveToFile),
('print', BaseIcons["print"],
self.parent.PrintMenu),
(None, ),
('settings', PlotIcons["options"],
self.parent.PlotOptionsMenu),
('quit', PlotIcons["quit"],
self.parent.OnQuit),
))
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