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|
"""
@package frame
@brief Timeline Tool
Classes:
- frame::DataCursor
- frame::TimelineFrame
- frame::LookUp
(C) 2012-2020 by the GRASS Development Team
This program is free software under the GNU General Public License
(>=v2). Read the file COPYING that comes with GRASS for details.
@author Anna Kratochvilova <kratochanna gmail.com>
"""
from math import ceil
from itertools import cycle
import numpy as np
import wx
from functools import reduce
try:
import matplotlib
# The recommended way to use wx with mpl is with the WXAgg
# backend.
matplotlib.use("WXAgg")
from matplotlib import gridspec
from matplotlib.figure import Figure
from matplotlib.backends.backend_wxagg import (
FigureCanvasWxAgg as FigCanvas,
NavigationToolbar2WxAgg as NavigationToolbar,
)
import matplotlib.dates as mdates
except ImportError as e:
raise ImportError(
_(
'The Timeline Tool needs the "matplotlib" '
"(python-matplotlib and on some systems also python-matplotlib-wx) "
"package(s) to be installed. {}"
).format(e)
)
import grass.script as grass
import grass.temporal as tgis
from core.gcmd import GError, GException, RunCommand
from gui_core import gselect
from gui_core.wrap import Button, StaticText
from core import globalvar
ALPHA = 1
COLORS = ["b", "g", "r", "c", "m", "y", "k"]
def check_version(*version):
"""Checks if given version or newer is installed"""
versionInstalled = []
for i in matplotlib.__version__.split("."):
try:
v = int(i)
versionInstalled.append(v)
except ValueError:
versionInstalled.append(0)
if versionInstalled < list(version):
return False
else:
return True
class TimelineFrame(wx.Frame):
"""The main frame of the application"""
def __init__(self, parent, title=_("Timeline Tool")):
wx.Frame.__init__(self, parent, id=wx.ID_ANY, title=title)
tgis.init(True)
self.datasets = []
self.timeData = {}
self._layout()
self.temporalType = None
self.unit = None
# We create a database interface here to speedup the GUI
self.dbif = tgis.SQLDatabaseInterfaceConnection()
self.dbif.connect()
self.Bind(wx.EVT_CLOSE, self.OnClose)
def OnClose(self, event):
"""Close the database interface and stop the messenger and C-interface
subprocesses.
"""
if self.dbif.connected is True:
self.dbif.close()
tgis.stop_subprocesses()
self.Destroy()
def _layout(self):
"""Creates the main panel with all the controls on it:
* mpl canvas
* mpl navigation toolbar
* Control panel for interaction
"""
self.panel = wx.Panel(self)
# Create the mpl Figure and FigCanvas objects.
# 5x4 inches, 100 dots-per-inch
#
# color = wx.SystemSettings.GetColour(wx.SYS_COLOUR_BACKGROUND)
self.fig = Figure((5.0, 4.0), facecolor=(1, 1, 1))
self.canvas = FigCanvas(self.panel, wx.ID_ANY, self.fig)
# axes are initialized later
self.axes2d = None
self.axes3d = None
# Create the navigation toolbar, tied to the canvas
#
self.toolbar = NavigationToolbar(self.canvas)
#
# Layout
#
self.vbox = wx.BoxSizer(wx.VERTICAL)
self.vbox.Add(self.canvas, 1, wx.LEFT | wx.TOP | wx.EXPAND)
self.vbox.Add(self.toolbar, 0, wx.EXPAND)
self.vbox.AddSpacer(10)
gridSizer = wx.GridBagSizer(hgap=5, vgap=5)
self.datasetSelect = gselect.Select(
parent=self.panel,
id=wx.ID_ANY,
size=globalvar.DIALOG_GSELECT_SIZE,
type="stds",
multiple=True,
)
self.drawButton = Button(self.panel, id=wx.ID_ANY, label=_("Draw"))
self.drawButton.Bind(wx.EVT_BUTTON, self.OnRedraw)
self.helpButton = Button(self.panel, id=wx.ID_ANY, label=_("Help"))
self.helpButton.Bind(wx.EVT_BUTTON, self.OnHelp)
self.view3dCheck = wx.CheckBox(
self.panel, id=wx.ID_ANY, label=_("3D plot of spatio-temporal extents")
)
self.view3dCheck.Bind(wx.EVT_CHECKBOX, self.OnRedraw)
if not check_version(1, 0, 0):
self.view3dCheck.SetLabel(
_("3D plot of spatio-temporal extents " "(matplotlib >= 1.0.0)")
)
self.view3dCheck.Disable()
gridSizer.Add(
StaticText(
self.panel, id=wx.ID_ANY, label=_("Select space time dataset(s):")
),
pos=(0, 0),
flag=wx.EXPAND | wx.ALIGN_CENTER_VERTICAL,
)
gridSizer.Add(self.datasetSelect, pos=(1, 0), flag=wx.EXPAND)
gridSizer.Add(self.drawButton, pos=(1, 1), flag=wx.EXPAND)
gridSizer.Add(self.helpButton, pos=(1, 2), flag=wx.EXPAND)
gridSizer.Add(
self.view3dCheck, pos=(2, 0), flag=wx.EXPAND | wx.ALIGN_CENTER_VERTICAL
)
self.vbox.Add(gridSizer, proportion=0, flag=wx.EXPAND | wx.ALL, border=10)
self.panel.SetSizer(self.vbox)
self.vbox.Fit(self)
def _getData(self, timeseries):
"""Load data and read properties"""
self.timeData = {}
mode = None
unit = None
for series in timeseries:
name = series[0] + "@" + series[1]
etype = series[2]
sp = tgis.dataset_factory(etype, name)
if not sp.is_in_db(dbif=self.dbif):
GError(
self,
message=_("Dataset <%s> not found in temporal database") % (name),
)
return
sp.select(dbif=self.dbif)
self.timeData[name] = {}
self.timeData[name]["elementType"] = series[2]
self.timeData[name]["temporalType"] = sp.get_temporal_type() # abs/rel
if mode is None:
mode = self.timeData[name]["temporalType"]
elif self.timeData[name]["temporalType"] != mode:
GError(
parent=self,
message=_(
"Datasets have different temporal type "
"(absolute x relative), which is not allowed."
),
)
return
# check topology
maps = sp.get_registered_maps_as_objects(dbif=self.dbif)
self.timeData[name]["validTopology"] = sp.check_temporal_topology(
maps=maps, dbif=self.dbif
)
self.timeData[name]["temporalMapType"] = sp.get_map_time() # point/interval
self.timeData[name]["unit"] = None # only with relative
if self.timeData[name]["temporalType"] == "relative":
start, end, self.timeData[name]["unit"] = sp.get_relative_time()
if unit is None:
unit = self.timeData[name]["unit"]
elif self.timeData[name]["unit"] != unit:
GError(
self,
_("Datasets have different time unit which is not allowed."),
)
return
self.timeData[name]["start_datetime"] = []
# self.timeData[name]['start_plot'] = []
self.timeData[name]["end_datetime"] = []
# self.timeData[name]['end_plot'] = []
self.timeData[name]["names"] = []
self.timeData[name]["north"] = []
self.timeData[name]["south"] = []
self.timeData[name]["west"] = []
self.timeData[name]["east"] = []
columns = ",".join(
["name", "start_time", "end_time", "north", "south", "west", "east"]
)
rows = sp.get_registered_maps(
columns=columns, where=None, order="start_time", dbif=self.dbif
)
if not rows:
GError(
parent=self,
message=_("Dataset <{name}> is empty").format(
name=series[0] + "@" + series[1]
),
)
return
for row in rows:
mapName, start, end, north, south, west, east = row
self.timeData[name]["start_datetime"].append(start)
self.timeData[name]["end_datetime"].append(end)
self.timeData[name]["names"].append(mapName)
self.timeData[name]["north"].append(north)
self.timeData[name]["south"].append(south)
self.timeData[name]["west"].append(west)
self.timeData[name]["east"].append(east)
self.temporalType = mode
self.unit = unit
def _draw3dFigure(self):
"""Draws 3d view (spatio-temporal extents).
Only for matplotlib versions >= 1.0.0.
Earlier versions cannot draw time ticks and alpha
and it has a slightly different API.
"""
self.axes3d.clear()
self.axes3d.grid(False)
# self.axes3d.grid(True)
if self.temporalType == "absolute":
convert = mdates.date2num
else:
convert = lambda x: x # noqa: E731
colors = cycle(COLORS)
plots = []
for name in self.datasets:
name = name[0] + "@" + name[1]
startZ = convert(self.timeData[name]["start_datetime"])
mapType = self.timeData[name]["temporalMapType"]
if mapType == "interval":
dZ = convert(self.timeData[name]["end_datetime"]) - startZ
else:
dZ = [0] * len(startZ)
startX = self.timeData[name]["west"]
dX = self.timeData[name]["east"] - np.array(startX)
startY = self.timeData[name]["south"]
dY = self.timeData[name]["north"] - np.array(startY)
color = next(colors)
plots.append(
self.axes3d.bar3d(
startX, startY, startZ, dX, dY, dZ, color=color, alpha=ALPHA
)
)
params = grass.read_command("g.proj", flags="g")
params = grass.parse_key_val(params)
if "unit" in params:
self.axes3d.set_xlabel(_("X [%s]") % params["unit"])
self.axes3d.set_ylabel(_("Y [%s]") % params["unit"])
else:
self.axes3d.set_xlabel(_("X"))
self.axes3d.set_ylabel(_("Y"))
if self.temporalType == "absolute":
if check_version(1, 1, 0):
self.axes3d.zaxis_date()
self.axes3d.set_zlabel(_("Time"))
self.axes3d.mouse_init()
self.canvas.draw()
def _draw2dFigure(self):
"""Draws 2D plot (temporal extents)"""
self.axes2d.clear()
self.axes2d.grid(True)
if self.temporalType == "absolute":
convert = mdates.date2num
else:
convert = lambda x: x # noqa: E731
colors = cycle(COLORS)
yticksNames = []
yticksPos = []
plots = []
lookUp = LookUp(self.timeData)
for i, name in enumerate(self.datasets):
# just name; with mapset it would be long
yticksNames.append(name[0])
name = name[0] + "@" + name[1]
yticksPos.append(i)
barData = []
pointData = []
mapType = self.timeData[name]["temporalMapType"]
start = convert(self.timeData[name]["start_datetime"])
# TODO: mixed
if mapType == "interval":
end = convert(self.timeData[name]["end_datetime"])
lookUpData = list(zip(start, end))
duration = end - np.array(start)
barData = list(zip(start, duration))
lookUp.AddDataset(
type_="bar",
yrange=(i - 0.1, i + 0.1),
xranges=lookUpData,
datasetName=name,
)
else:
# self.timeData[name]['end_plot'] = None
pointData = start
lookUp.AddDataset(
type_="point", yrange=i, xranges=pointData, datasetName=name
)
color = next(colors)
if mapType == "interval":
plots.append(
self.axes2d.broken_barh(
xranges=barData,
yrange=(i - 0.1, 0.2),
facecolors=color,
edgecolor="black",
alpha=ALPHA,
picker=True,
)
)
else:
plots.append(
self.axes2d.plot(
pointData,
[i] * len(pointData),
marker="o",
linestyle="None",
color=color,
picker=True,
)[0]
)
if self.temporalType == "absolute":
self.axes2d.xaxis_date()
self.fig.autofmt_xdate()
# self.axes2d.set_xlabel(_("Time"))
else:
self.axes2d.set_xlabel(_("Time [%s]") % self.unit)
self.axes2d.set_yticks(yticksPos)
self.axes2d.set_yticklabels(yticksNames)
self.axes2d.set_ylim(min(yticksPos) - 1, max(yticksPos) + 1)
# adjust xlim
xlim = self.axes2d.get_xlim()
padding = ceil((xlim[1] - xlim[0]) / 20.0)
self.axes2d.set_xlim(xlim[0] - padding, xlim[1] + padding)
self.axes2d.set_axisbelow(True)
self.canvas.draw()
DataCursor(plots, lookUp, InfoFormat)
def OnRedraw(self, event):
"""Required redrawing."""
datasets = self.datasetSelect.GetValue().strip()
if not datasets:
return
datasets = datasets.split(",")
try:
datasets = self._checkDatasets(datasets)
if not datasets:
return
except GException as error:
GError(parent=self, message=str(error), showTraceback=False)
return
self.datasets = datasets
self._redraw()
def _change_figure_geometry(self, nrows=1, ncols=1, num=1):
"""Change figure geometry
https://github.com/kecnry/autofig/commit/93e6debb953f5b2afe05f463064d60b9566afa59
:param int rows: number of rows
:param int cols: number of cols
:param int num: subplot order
"""
if not check_version(3, 4, 0):
self.axes2d.change_geometry(nrows, ncols, num)
else:
for i, ax in enumerate(self.fig.axes):
ax.set_subplotspec(
gridspec.SubplotSpec(
gridspec.GridSpec(
nrows,
ncols,
figure=self.fig,
),
i,
)
)
def _redraw(self):
"""Readraw data.
Decides if to draw also 3D and adjusts layout if needed.
"""
self._getData(self.datasets)
# axes3d are physically removed
if not self.axes2d:
self.axes2d = self.fig.add_subplot(1, 1, 1)
self._draw2dFigure()
if check_version(1, 0, 0):
if self.view3dCheck.IsChecked():
self._change_figure_geometry(nrows=2, ncols=1, num=1)
if not self.axes3d:
# do not remove this import - unused but it is required for
# 3D
from mpl_toolkits.mplot3d import Axes3D # noqa: F401
self.axes3d = self.fig.add_subplot(2, 1, 2, projection="3d")
self.axes3d.set_visible(True)
self._draw3dFigure()
else:
if self.axes3d:
self.fig.delaxes(self.axes3d)
self.axes3d = None
self._change_figure_geometry()
self._draw2dFigure()
self.canvas.draw()
def _checkDatasets(self, datasets):
"""Checks and validates datasets.
Reports also type of dataset (e.g. 'strds').
:return: (mapName, mapset, type)
"""
validated = []
tDict = tgis.tlist_grouped("stds", group_type=True, dbif=self.dbif)
# nested list with '(map, mapset, etype)' items
allDatasets = [
[
[(map, mapset, etype) for map in maps]
for etype, maps in etypesDict.items()
]
for mapset, etypesDict in tDict.items()
]
# flatten this list
if allDatasets:
allDatasets = reduce(
lambda x, y: x + y, reduce(lambda x, y: x + y, allDatasets)
)
mapsets = tgis.get_tgis_c_library_interface().available_mapsets()
allDatasets = [
i for i in sorted(allDatasets, key=lambda l: mapsets.index(l[1]))
]
for dataset in datasets:
errorMsg = _("Space time dataset <%s> not found.") % dataset
if dataset.find("@") >= 0:
nameShort, mapset = dataset.split("@", 1)
indices = [
n
for n, (mapName, mapsetName, etype) in enumerate(allDatasets)
if nameShort == mapName and mapsetName == mapset
]
else:
indices = [
n
for n, (mapName, mapset, etype) in enumerate(allDatasets)
if dataset == mapName
]
if len(indices) == 0:
raise GException(errorMsg)
elif len(indices) >= 2:
dlg = wx.SingleChoiceDialog(
self,
message=_("Please specify the space time dataset <%s>." % dataset),
caption=_("Ambiguous dataset name"),
choices=[
(
"%(map)s@%(mapset)s: %(etype)s"
% {
"map": allDatasets[i][0],
"mapset": allDatasets[i][1],
"etype": allDatasets[i][2],
}
)
for i in indices
],
style=wx.CHOICEDLG_STYLE | wx.OK,
)
if dlg.ShowModal() == wx.ID_OK:
index = dlg.GetSelection()
validated.append(allDatasets[indices[index]])
else:
continue
else:
validated.append(allDatasets[indices[0]])
return validated
def OnHelp(self, event):
RunCommand("g.manual", quiet=True, entry="g.gui.timeline")
# interface
def SetDatasets(self, datasets):
"""Set data"""
if not datasets:
return
try:
datasets = self._checkDatasets(datasets)
if not datasets:
return
except GException as error:
GError(parent=self, message=str(error), showTraceback=False)
return
self.datasets = datasets
self.datasetSelect.SetValue(
",".join(map(lambda x: x[0] + "@" + x[1], datasets))
)
self._redraw()
def Show3D(self, show):
"""Show also 3D if possible"""
if check_version(1, 0, 0):
self.view3dCheck.SetValue(show)
class LookUp:
"""Helper class for searching info by coordinates"""
def __init__(self, timeData):
self.data = {}
self.timeData = timeData
def AddDataset(self, type_, yrange, xranges, datasetName):
if type_ == "bar":
self.data[yrange] = {"name": datasetName}
for i, (start, end) in enumerate(xranges):
self.data[yrange][(start, end)] = i
elif type_ == "point":
self.data[(yrange, yrange)] = {"name": datasetName}
for i, start in enumerate(xranges):
self.data[(yrange, yrange)][(start, start)] = i
def GetInformation(self, x, y):
keys = None
for keyY in self.data.keys():
if keyY[0] <= y <= keyY[1]:
for keyX in self.data[keyY].keys():
if keyX != "name" and keyX[0] <= x <= keyX[1]:
keys = keyY, keyX
break
if keys:
break
if not keys:
return None
datasetName = self.data[keys[0]]["name"]
mapIndex = self.data[keys[0]][keys[1]]
return self.timeData, datasetName, mapIndex
def InfoFormat(timeData, datasetName, mapIndex):
"""Formats information about dataset"""
text = []
etype = timeData[datasetName]["elementType"]
name, mapset = datasetName.split("@")
if etype == "strds":
text.append(_("Space time raster dataset: %s") % name)
elif etype == "stvds":
text.append(_("Space time vector dataset: %s") % name)
elif etype == "str3ds":
text.append(_("Space time 3D raster dataset: %s") % name)
text.append(_("Mapset: %s") % mapset)
text.append(_("Map name: %s") % timeData[datasetName]["names"][mapIndex])
text.append(_("Start time: %s") % timeData[datasetName]["start_datetime"][mapIndex])
text.append(_("End time: %s") % timeData[datasetName]["end_datetime"][mapIndex])
if not timeData[datasetName]["validTopology"]:
text.append(_("WARNING: invalid topology"))
text.append(_("\nPress Del to dismiss."))
return "\n".join(text)
class DataCursor:
"""A simple data cursor widget that displays the x,y location of a
matplotlib artist when it is selected.
Source: https://stackoverflow.com/questions/4652439/
is-there-a-matplotlib-equivalent-of-matlabs-datacursormode/4674445
"""
def __init__(
self,
artists,
lookUp,
formatFunction,
tolerance=5,
offsets=(-30, 30),
display_all=False,
):
"""Create the data cursor and connect it to the relevant figure.
"artists" is the matplotlib artist or sequence of artists that will be
selected.
"tolerance" is the radius (in points) that the mouse click must be
within to select the artist.
"offsets" is a tuple of (x,y) offsets in points from the selected
point to the displayed annotation box
"display_all" controls whether more than one annotation box will
be shown if there are multiple axes. Only one will be shown
per-axis, regardless.
"""
self.lookUp = lookUp
self.formatFunction = formatFunction
self.offsets = offsets
self.display_all = display_all
if not np.iterable(artists):
artists = [artists]
self.artists = artists
self.axes = tuple({art.axes for art in self.artists})
self.figures = tuple({ax.figure for ax in self.axes})
self.annotations = {}
for ax in self.axes:
self.annotations[ax] = self.annotate(ax)
for artist in self.artists:
artist.set_pickradius(tolerance)
for fig in self.figures:
fig.canvas.mpl_connect("pick_event", self)
fig.canvas.mpl_connect("key_press_event", self.keyPressed)
def keyPressed(self, event):
"""Key pressed - hide annotation if Delete was pressed"""
if event.key != "delete":
return
for ax in self.axes:
self.annotations[ax].set_visible(False)
event.canvas.draw()
def annotate(self, ax):
"""Draws and hides the annotation box for the given axis "ax"."""
annotation = ax.annotate(
self.formatFunction,
xy=(0, 0),
ha="center",
xytext=self.offsets,
textcoords="offset points",
va="bottom",
bbox=dict(boxstyle="round,pad=0.5", fc="yellow", alpha=0.7),
arrowprops=dict(arrowstyle="->", connectionstyle="arc3,rad=0"),
annotation_clip=False,
multialignment="left",
)
annotation.set_visible(False)
return annotation
def __call__(self, event):
"""Intended to be called through "mpl_connect"."""
# Rather than trying to interpolate, just display the clicked coords
# This will only be called if it's within "tolerance", anyway.
x, y = event.mouseevent.xdata, event.mouseevent.ydata
annotation = self.annotations[event.artist.axes]
if x is not None:
if not self.display_all:
# Hide any other annotation boxes...
for ann in self.annotations.values():
ann.set_visible(False)
# Update the annotation in the current axis..
annotation.xy = x, y
if "Line2D" in str(type(event.artist)):
y = event.artist.get_ydata()[0]
xData = event.artist.get_xdata()
x = xData[np.argmin(abs(xData - x))]
info = self.lookUp.GetInformation(x, y)
if not info:
return
text = self.formatFunction(*info)
annotation.set_text(text)
annotation.set_visible(True)
event.canvas.draw()
def run(parent=None, datasets=None):
frame = TimelineFrame(parent)
if datasets:
frame.SetDatasets(datasets)
frame.Show()
if __name__ == "__main__":
run()
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