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#!/usr/bin/env python3
"""
@package frame
@brief Temporal Plot Tool
Classes:
- frame::DataCursor
- frame::TplotFrame
- frame::LookUp
(C) 2012-2016 by the GRASS Development Team
This program is free software under the GNU General Public License
(>=v2). Read the file COPYING that comes with GRASS for details.
@author Luca Delucchi
@author start stvds support Matej Krejci
"""
import os
from itertools import cycle
import numpy as np
import wx
from grass.pygrass.modules import Module
import grass.script as grass
from functools import reduce
try:
import matplotlib
# The recommended way to use wx with mpl is with the WXAgg
# backend.
matplotlib.use("WXAgg")
from matplotlib.figure import Figure
from matplotlib.backends.backend_wxagg import (
FigureCanvasWxAgg as FigCanvas,
NavigationToolbar2WxAgg as NavigationToolbar,
)
import matplotlib.dates as mdates
except ImportError as e:
raise ImportError(
_(
'The Temporal Plot Tool needs the "matplotlib" '
"(python-matplotlib) package to be installed. {0}"
).format(e)
)
import grass.temporal as tgis
from core.gcmd import GMessage, GError, GException, RunCommand
from gui_core.widgets import CoordinatesValidator
from gui_core import gselect
from core import globalvar
from grass.pygrass.vector.geometry import Point
from grass.pygrass.raster import RasterRow
from grass.pygrass.gis.region import Region
from collections import OrderedDict
from subprocess import PIPE
try:
import wx.lib.agw.flatnotebook as FN
except ImportError:
import wx.lib.flatnotebook as FN
import wx.lib.filebrowsebutton as filebrowse
from gui_core.widgets import GNotebook
from gui_core.wrap import CheckBox, TextCtrl, Button, StaticText
ALPHA = 0.5
COLORS = ["b", "g", "r", "c", "m", "y", "k"]
LINEAR_REG_LINE_COLOR = (0.56, 0.00, 1.00)
def check_version(*version):
"""Checks if given version or newer is installed"""
versionInstalled = []
for i in matplotlib.__version__.split("."):
try:
v = int(i)
versionInstalled.append(v)
except ValueError:
versionInstalled.append(0)
if versionInstalled < list(version):
return False
else:
return True
def findBetween(s, first, last):
try:
start = s.rindex(first) + len(first)
end = s.rindex(last, start)
return s[start:end]
except ValueError:
return ""
class TplotFrame(wx.Frame):
"""The main frame of the application"""
def __init__(self, parent, giface, title=_("Temporal Plot Tool")):
wx.Frame.__init__(self, parent, id=wx.ID_ANY, title=title)
tgis.init(True)
self._giface = giface
self.datasetsV = None
self.datasetsR = None
self.overwrite = False
# self.vectorDraw=False
# self.rasterDraw=False
self.init()
self._layout()
# We create a database interface here to speedup the GUI
self.dbif = tgis.SQLDatabaseInterfaceConnection()
self.dbif.connect()
self.Bind(wx.EVT_CLOSE, self.onClose)
self.region = Region()
def init(self):
self.timeDataR = OrderedDict()
self.timeDataV = OrderedDict()
self.temporalType = None
self.unit = None
self.listWhereConditions = []
self.plotNameListR = []
self.plotNameListV = []
self.poi = None
self.csvpath = None
def __del__(self):
"""Close the database interface and stop the messenger and C-interface
subprocesses.
"""
if self.dbif.connected is True:
self.dbif.close()
tgis.stop_subprocesses()
def onClose(self, evt):
if self._giface.GetMapDisplay():
self.coorval.OnClose()
self.cats.OnClose()
self.__del__()
self.Destroy()
def _layout(self):
"""Creates the main panel with all the controls on it:
* mpl canvas
* mpl navigation toolbar
* Control panel for interaction
"""
self.mainPanel = wx.Panel(self)
# Create the mpl Figure and FigCanvas objects.
# 5x4 inches, 100 dots-per-inch
#
# color = wx.SystemSettings.GetColour(wx.SYS_COLOUR_BACKGROUND)
# ------------CANVAS AND TOOLBAR------------
self.fig = Figure((5.0, 4.0), facecolor=(1, 1, 1))
self.canvas = FigCanvas(self.mainPanel, wx.ID_ANY, self.fig)
# axes are initialized later
self.axes2d = None
# Create the navigation toolbar, tied to the canvas
#
self.toolbar = NavigationToolbar(self.canvas)
#
# Layout
#
# ------------MAIN VERTICAL SIZER------------
self.vbox = wx.BoxSizer(wx.VERTICAL)
self.vbox.Add(self.canvas, 1, wx.LEFT | wx.TOP | wx.EXPAND)
self.vbox.Add(self.toolbar, 0, wx.EXPAND)
# self.vbox.AddSpacer(10)
# ------------ADD NOTEBOOK------------
self.ntb = GNotebook(parent=self.mainPanel, style=FN.FNB_NODRAG)
# ------------ITEMS IN NOTEBOOK PAGE (RASTER)------------------------
self.controlPanelRaster = wx.Panel(parent=self.ntb, id=wx.ID_ANY)
self.datasetSelectLabelR = StaticText(
parent=self.controlPanelRaster,
id=wx.ID_ANY,
label=_(
"Raster temporal "
"dataset (strds)\n"
"Press ENTER after"
" typing the name or select"
" with the combobox"
),
)
self.datasetSelectR = gselect.Select(
parent=self.controlPanelRaster,
id=wx.ID_ANY,
size=globalvar.DIALOG_GSELECT_SIZE,
type="strds",
multiple=True,
)
self.coor = StaticText(
parent=self.controlPanelRaster,
id=wx.ID_ANY,
label=_("X and Y coordinates separated by " "comma:"),
)
try:
self._giface.GetMapWindow()
self.coorval = gselect.CoordinatesSelect(
parent=self.controlPanelRaster, giface=self._giface
)
except:
self.coorval = TextCtrl(
parent=self.controlPanelRaster,
id=wx.ID_ANY,
size=globalvar.DIALOG_TEXTCTRL_SIZE,
validator=CoordinatesValidator(),
)
self.coorval.SetToolTip(
_(
"Coordinates can be obtained for example"
" by right-clicking on Map Display."
)
)
self.linRegRaster = CheckBox(
parent=self.controlPanelRaster,
id=wx.ID_ANY,
label=_("Show simple linear regression line"),
)
self.controlPanelSizerRaster = wx.BoxSizer(wx.VERTICAL)
# self.controlPanelSizer.Add(wx.StaticText(self.panel, id=wx.ID_ANY,
# label=_("Select space time raster dataset(s):")),
# pos=(0, 0), flag=wx.EXPAND | wx.ALIGN_CENTER_VERTICAL)
self.controlPanelSizerRaster.Add(self.datasetSelectLabelR, flag=wx.EXPAND)
self.controlPanelSizerRaster.Add(self.datasetSelectR, flag=wx.EXPAND)
self.controlPanelSizerRaster.Add(self.coor, flag=wx.EXPAND)
self.controlPanelSizerRaster.Add(self.coorval, flag=wx.EXPAND)
self.controlPanelSizerRaster.Add(self.linRegRaster, flag=wx.EXPAND)
self.controlPanelRaster.SetSizer(self.controlPanelSizerRaster)
self.controlPanelSizerRaster.Fit(self)
self.ntb.AddPage(page=self.controlPanelRaster, text=_("STRDS"), name="STRDS")
# ------------ITEMS IN NOTEBOOK PAGE (VECTOR)------------------------
self.controlPanelVector = wx.Panel(parent=self.ntb, id=wx.ID_ANY)
self.datasetSelectLabelV = StaticText(
parent=self.controlPanelVector,
id=wx.ID_ANY,
label=_(
"Vector temporal "
"dataset (stvds)\n"
"Press ENTER after"
" typing the name or select"
" with the combobox"
),
)
self.datasetSelectV = gselect.Select(
parent=self.controlPanelVector,
id=wx.ID_ANY,
size=globalvar.DIALOG_GSELECT_SIZE,
type="stvds",
multiple=True,
)
self.datasetSelectV.Bind(wx.EVT_TEXT, self.OnVectorSelected)
self.attribute = gselect.ColumnSelect(parent=self.controlPanelVector)
self.attributeLabel = StaticText(
parent=self.controlPanelVector,
id=wx.ID_ANY,
label=_("Select attribute column"),
)
# TODO fix the category selection as done for coordinates
try:
self._giface.GetMapWindow()
self.cats = gselect.VectorCategorySelect(
parent=self.controlPanelVector, giface=self._giface
)
except:
self.cats = TextCtrl(
parent=self.controlPanelVector,
id=wx.ID_ANY,
size=globalvar.DIALOG_TEXTCTRL_SIZE,
)
self.catsLabel = StaticText(
parent=self.controlPanelVector,
id=wx.ID_ANY,
label=_("Select category of vector(s)"),
)
self.linRegVector = CheckBox(
parent=self.controlPanelVector,
id=wx.ID_ANY,
label=_("Show simple linear regression line"),
)
self.controlPanelSizerVector = wx.BoxSizer(wx.VERTICAL)
# self.controlPanelSizer.Add(wx.StaticText(self.panel, id=wx.ID_ANY,
# label=_("Select space time raster dataset(s):")),
# pos=(0, 0), flag=wx.EXPAND | wx.ALIGN_CENTER_VERTICAL)
self.controlPanelSizerVector.Add(self.datasetSelectLabelV, flag=wx.EXPAND)
self.controlPanelSizerVector.Add(self.datasetSelectV, flag=wx.EXPAND)
self.controlPanelSizerVector.Add(self.attributeLabel, flag=wx.EXPAND)
self.controlPanelSizerVector.Add(self.attribute, flag=wx.EXPAND)
self.controlPanelSizerVector.Add(self.catsLabel, flag=wx.EXPAND)
self.controlPanelSizerVector.Add(self.cats, flag=wx.EXPAND)
self.controlPanelSizerVector.Add(self.linRegVector, flag=wx.EXPAND)
self.controlPanelVector.SetSizer(self.controlPanelSizerVector)
self.controlPanelSizerVector.Fit(self)
self.ntb.AddPage(page=self.controlPanelVector, text=_("STVDS"), name="STVDS")
# ------------ITEMS IN NOTEBOOK PAGE (LABELS)------------------------
self.controlPanelLabels = wx.Panel(parent=self.ntb, id=wx.ID_ANY)
self.titleLabel = StaticText(
parent=self.controlPanelLabels,
id=wx.ID_ANY,
label=_("Set title for the plot"),
)
self.title = TextCtrl(
parent=self.controlPanelLabels,
id=wx.ID_ANY,
size=globalvar.DIALOG_TEXTCTRL_SIZE,
)
self.xLabel = StaticText(
parent=self.controlPanelLabels,
id=wx.ID_ANY,
label=_("Set label for X axis"),
)
self.x = TextCtrl(
parent=self.controlPanelLabels,
id=wx.ID_ANY,
size=globalvar.DIALOG_TEXTCTRL_SIZE,
)
self.yLabel = StaticText(
parent=self.controlPanelLabels,
id=wx.ID_ANY,
label=_("Set label for Y axis"),
)
self.y = TextCtrl(
parent=self.controlPanelLabels,
id=wx.ID_ANY,
size=globalvar.DIALOG_TEXTCTRL_SIZE,
)
self.controlPanelSizerLabels = wx.BoxSizer(wx.VERTICAL)
self.controlPanelSizerLabels.Add(self.titleLabel, flag=wx.EXPAND)
self.controlPanelSizerLabels.Add(self.title, flag=wx.EXPAND)
self.controlPanelSizerLabels.Add(self.xLabel, flag=wx.EXPAND)
self.controlPanelSizerLabels.Add(self.x, flag=wx.EXPAND)
self.controlPanelSizerLabels.Add(self.yLabel, flag=wx.EXPAND)
self.controlPanelSizerLabels.Add(self.y, flag=wx.EXPAND)
self.controlPanelLabels.SetSizer(self.controlPanelSizerLabels)
self.controlPanelSizerLabels.Fit(self)
self.ntb.AddPage(page=self.controlPanelLabels, text=_("Labels"), name="Labels")
# ------------ITEMS IN NOTEBOOK PAGE (EXPORT)------------------------
self.controlPanelExport = wx.Panel(parent=self.ntb, id=wx.ID_ANY)
self.csvLabel = StaticText(
parent=self.controlPanelExport,
id=wx.ID_ANY,
label=_("Path for output CSV file " "with plotted data"),
)
self.csvButton = filebrowse.FileBrowseButton(
parent=self.controlPanelExport,
id=wx.ID_ANY,
size=globalvar.DIALOG_GSELECT_SIZE,
labelText="",
dialogTitle=_("CVS path"),
buttonText=_("Browse"),
startDirectory=os.getcwd(),
fileMode=wx.FD_SAVE,
)
self.headerLabel = StaticText(
parent=self.controlPanelExport,
id=wx.ID_ANY,
label=_("Do you want the CSV header?"),
)
self.headerCheck = wx.CheckBox(parent=self.controlPanelExport, id=wx.ID_ANY)
self.controlPanelSizerCheck = wx.BoxSizer(wx.HORIZONTAL)
self.controlPanelSizerCheck.Add(self.headerCheck)
self.controlPanelSizerCheck.Add(self.headerLabel)
self.controlPanelSizerExport = wx.BoxSizer(wx.VERTICAL)
self.controlPanelSizerExport.Add(self.csvLabel)
self.controlPanelSizerExport.Add(self.csvButton)
self.controlPanelSizerExport.Add(self.controlPanelSizerCheck)
self.controlPanelExport.SetSizer(self.controlPanelSizerExport)
self.controlPanelSizerCheck.Fit(self)
self.controlPanelSizerExport.Fit(self)
self.ntb.AddPage(page=self.controlPanelExport, text=_("Export"), name="Export")
# ------------Buttons on the bottom(draw,help)------------
self.vButtPanel = wx.Panel(self.mainPanel, id=wx.ID_ANY)
self.vButtSizer = wx.BoxSizer(wx.HORIZONTAL)
self.drawButton = Button(self.vButtPanel, id=wx.ID_ANY, label=_("Draw"))
self.drawButton.Bind(wx.EVT_BUTTON, self.OnRedraw)
self.helpButton = Button(self.vButtPanel, id=wx.ID_ANY, label=_("Help"))
self.helpButton.Bind(wx.EVT_BUTTON, self.OnHelp)
self.vButtSizer.Add(self.drawButton)
self.vButtSizer.Add(self.helpButton)
self.vButtPanel.SetSizer(self.vButtSizer)
self.mainPanel.SetSizer(self.vbox)
self.vbox.Add(self.ntb, flag=wx.EXPAND)
self.vbox.Add(self.vButtPanel, flag=wx.EXPAND)
self.vbox.Fit(self)
self.mainPanel.Fit()
def _getSTRDdata(self, timeseries):
"""Load data and read properties
:param list timeseries: a list of timeseries
"""
if not self.poi:
GError(
parent=self, message=_("Invalid input coordinates"), showTraceback=False
)
return
mode = None
unit = None
columns = ",".join(["name", "start_time", "end_time"])
for series in timeseries:
name = series[0]
fullname = name + "@" + series[1]
etype = series[2]
sp = tgis.dataset_factory(etype, fullname)
if not sp.is_in_db(dbif=self.dbif):
GError(
message=_("Dataset <%s> not found in temporal " "database")
% (fullname),
parent=self,
)
return
sp.select(dbif=self.dbif)
minmin = sp.metadata.get_min_min()
self.plotNameListR.append(name)
self.timeDataR[name] = OrderedDict()
self.timeDataR[name]["temporalDataType"] = etype
self.timeDataR[name]["temporalType"] = sp.get_temporal_type()
self.timeDataR[name]["granularity"] = sp.get_granularity()
if mode is None:
mode = self.timeDataR[name]["temporalType"]
elif self.timeDataR[name]["temporalType"] != mode:
GError(
parent=self,
message=_(
"Datasets have different temporal"
" type (absolute x relative), "
"which is not allowed."
),
)
return
# check topology
maps = sp.get_registered_maps_as_objects(dbif=self.dbif)
self.timeDataR[name]["validTopology"] = sp.check_temporal_topology(
maps=maps, dbif=self.dbif
)
self.timeDataR[name]["unit"] = None # only with relative
if self.timeDataR[name]["temporalType"] == "relative":
start, end, self.timeDataR[name]["unit"] = sp.get_relative_time()
if unit is None:
unit = self.timeDataR[name]["unit"]
elif self.timeDataR[name]["unit"] != unit:
GError(
parent=self,
message=_(
"Datasets have different "
"time unit which is not "
"allowed."
),
)
return
rows = sp.get_registered_maps(
columns=columns, where=None, order="start_time", dbif=self.dbif
)
for row in rows:
self.timeDataR[name][row[0]] = {}
self.timeDataR[name][row[0]]["start_datetime"] = row[1]
self.timeDataR[name][row[0]]["end_datetime"] = row[2]
r = RasterRow(row[0])
r.open()
val = r.get_value(self.poi)
r.close()
if val == -2147483648 and val < minmin:
self.timeDataR[name][row[0]]["value"] = None
else:
self.timeDataR[name][row[0]]["value"] = val
self.unit = unit
self.temporalType = mode
return
def _parseVDbConn(self, mapp, layerInp):
"""find attribute key according to layer of input map"""
vdb = Module("v.db.connect", map=mapp, flags="g", stdout_=PIPE)
vdb = vdb.outputs.stdout
for line in vdb.splitlines():
lsplit = line.split("|")
layer = lsplit[0].split("/")[0]
if str(layer) == str(layerInp):
return lsplit[2]
return None
def _getExistingCategories(self, mapp, cats):
"""Get a list of categories for a vector map"""
vdb = grass.read_command("v.category", input=mapp, option="print")
categories = vdb.splitlines()
if not cats:
return categories
for cat in cats:
if str(cat) not in categories:
GMessage(
message=_(
"Category {ca} is not on vector map"
" {ma} and it will be not used"
).format(ma=mapp, ca=cat),
parent=self,
)
cats.remove(cat)
return cats
def _getSTVDData(self, timeseries):
"""Load data and read properties
:param list timeseries: a list of timeseries
"""
mode = None
unit = None
cats = None
attribute = self.attribute.GetValue()
if self.cats.GetValue() != "":
cats = self.cats.GetValue().split(",")
if cats and self.poi:
GMessage(
message=_(
"Both coordinates and categories are set, "
"coordinates will be used. The use categories "
"remove text from coordinate form"
)
)
if not attribute or attribute == "":
GError(
parent=self,
showTraceback=False,
message=_(
"With Vector temporal dataset you have to select"
" an attribute column"
),
)
return
columns = ",".join(["name", "start_time", "end_time", "id", "layer"])
for series in timeseries:
name = series[0]
fullname = name + "@" + series[1]
etype = series[2]
sp = tgis.dataset_factory(etype, fullname)
if not sp.is_in_db(dbif=self.dbif):
GError(
message=_("Dataset <%s> not found in temporal " "database")
% (fullname),
parent=self,
showTraceback=False,
)
return
sp.select(dbif=self.dbif)
rows = sp.get_registered_maps(
dbif=self.dbif, order="start_time", columns=columns, where=None
)
self.timeDataV[name] = OrderedDict()
self.timeDataV[name]["temporalDataType"] = etype
self.timeDataV[name]["temporalType"] = sp.get_temporal_type()
self.timeDataV[name]["granularity"] = sp.get_granularity()
if mode is None:
mode = self.timeDataV[name]["temporalType"]
elif self.timeDataV[name]["temporalType"] != mode:
GError(
parent=self,
showTraceback=False,
message=_(
"Datasets have different temporal type ("
"absolute x relative), which is not allowed."
),
)
return
self.timeDataV[name]["unit"] = None # only with relative
if self.timeDataV[name]["temporalType"] == "relative":
start, end, self.timeDataV[name]["unit"] = sp.get_relative_time()
if unit is None:
unit = self.timeDataV[name]["unit"]
elif self.timeDataV[name]["unit"] != unit:
GError(
message=_(
"Datasets have different time unit which" " is not allowed."
),
parent=self,
showTraceback=False,
)
return
if self.poi:
self.plotNameListV.append(name)
# TODO set an appropriate distance, right now a big one is set
# to return the closer point to the selected one
out = grass.vector_what(
map="pois_srvds",
coord=self.poi.coords(),
distance=10000000000000000,
)
if len(out) != len(rows):
GError(
parent=self,
showTraceback=False,
message=_(
"Difference number of vector layers and "
"maps in the vector temporal dataset"
),
)
return
for i in range(len(rows)):
row = rows[i]
values = out[i]
if str(row["layer"]) == str(values["Layer"]):
lay = "{map}_{layer}".format(
map=row["name"], layer=values["Layer"]
)
self.timeDataV[name][lay] = {}
self.timeDataV[name][lay]["start_datetime"] = row["start_time"]
self.timeDataV[name][lay]["end_datetime"] = row["start_time"]
self.timeDataV[name][lay]["value"] = values["Attributes"][
attribute
]
else:
wherequery = ""
cats = self._getExistingCategories(rows[0]["name"], cats)
totcat = len(cats)
ncat = 1
for cat in cats:
if ncat == 1 and totcat != 1:
wherequery += "{k}={c} or".format(c=cat, k="{key}")
elif ncat == 1 and totcat == 1:
wherequery += "{k}={c}".format(c=cat, k="{key}")
elif ncat == totcat:
wherequery += " {k}={c}".format(c=cat, k="{key}")
else:
wherequery += " {k}={c} or".format(c=cat, k="{key}")
catn = "cat{num}".format(num=cat)
self.plotNameListV.append("{na}+{cat}".format(na=name, cat=catn))
self.timeDataV[name][catn] = OrderedDict()
ncat += 1
for row in rows:
lay = int(row["layer"])
catkey = self._parseVDbConn(row["name"], lay)
if not catkey:
GError(
parent=self,
showTraceback=False,
message=_(
"No connection between vector map {vmap} "
"and layer {la}".format(vmap=row["name"], la=lay)
),
)
return
vals = grass.vector_db_select(
map=row["name"],
layer=lay,
where=wherequery.format(key=catkey),
columns=attribute,
)
layn = "lay{num}".format(num=lay)
for cat in cats:
catn = "cat{num}".format(num=cat)
if layn not in self.timeDataV[name][catn].keys():
self.timeDataV[name][catn][layn] = {}
self.timeDataV[name][catn][layn]["start_datetime"] = row[
"start_time"
]
self.timeDataV[name][catn][layn]["end_datetime"] = row[
"end_time"
]
self.timeDataV[name][catn][layn]["value"] = vals["values"][
int(cat)
][0]
self.unit = unit
self.temporalType = mode
return
def _drawFigure(self):
"""Draws or print 2D plot (temporal extents)"""
self.axes2d.clear()
self.axes2d.grid(False)
if self.temporalType == "absolute":
self.axes2d.xaxis_date()
self.fig.autofmt_xdate()
self.convert = mdates.date2num
self.invconvert = mdates.num2date
else:
self.convert = lambda x: x
self.invconvert = self.convert
self.colors = cycle(COLORS)
self.yticksNames = []
self.yticksPos = []
self.plots = []
self.drawTitle = self.title.GetValue()
self.drawX = self.x.GetValue()
self.drawY = self.y.GetValue()
if self.datasetsR:
self.lookUp = LookUp(self.timeDataR, self.invconvert)
else:
self.lookUp = LookUp(self.timeDataV, self.invconvert)
if self.datasetsR:
self.drawR()
if self.datasetsV:
if self.poi:
self.drawV()
elif self.cats:
self.drawVCats()
self.canvas.draw()
DataCursor(self.plots, self.lookUp, InfoFormat, self.convert)
def _setLabels(self, x):
"""Function to set the right labels"""
if self.drawX != "":
self.axes2d.set_xlabel(self.drawX)
else:
if self.temporalType == "absolute":
self.axes2d.set_xlabel(_("Temporal resolution: %s" % x))
else:
self.axes2d.set_xlabel(_("Time [%s]") % self.unit)
if self.drawY != "":
self.axes2d.set_ylabel(self.drawY)
else:
self.axes2d.set_ylabel(", ".join(self.yticksNames))
if self.drawTitle != "":
self.axes2d.set_title(self.drawTitle)
def _writeCSV(self, x, y):
"""Used to write CSV file of plotted data"""
import csv
if isinstance(y[0], list):
zipped = list(zip(x, *y))
else:
zipped = list(zip(x, y))
with open(self.csvpath, "w", newline="") as fi:
writer = csv.writer(fi)
if self.header:
head = ["Time"]
head.extend(self.yticksNames)
writer.writerow(head)
writer.writerows(zipped)
def _calcSimpleLinReg(self, x, y, returnFormula=False):
"""Calculate simple linear regression model
y = a + b*x (y is dependent variable, a is intercept, b is slope,
x is explanatory variable)
param numpy.array x: explanatory variable
param numpy.array y: dependent variable
param returnFormula bool: return calculated simple linear
regression formula too
return tuple or function:
tuple: (simple linear regression function model for dependent
variable, calculated simple linear regression formula model)
function: simple linear regression model function for dependent
variable
"""
def predict(x1):
return a + b * x1
b = (len(x) * np.sum(x * y) - np.sum(x) * np.sum(y)) / (
len(x) * np.sum(x * x) - np.sum(x) * np.sum(x)
)
a = (np.sum(y) - b * np.sum(x)) / len(x)
if returnFormula:
return predict, "y = {a:.5f} + {b:.5f}*x".format(a=a, b=b)
return predict
def _drawSimpleLinRegLine(self, xdata, ydata):
"""Draw simple regression line
:param list xdata: x axis data
:param list xdata: y axis data
return None
"""
predict, regFormula = self._calcSimpleLinReg(
x=np.array(xdata), y=np.array(ydata), returnFormula=True
)
r2 = "r\u00B2 = {:.5f}".format(
np.corrcoef(np.array(xdata), np.array(ydata))[0, 1] ** 2
)
self.plots.append(
self.axes2d.plot(
xdata,
predict(x1=np.array(xdata)),
color=LINEAR_REG_LINE_COLOR,
label="{reg}, {r2}".format(reg=regFormula, r2=r2),
)[0]
)
print(regFormula)
import platform
if platform.system() == "Windows":
print(" =".join(["r2"] + r2.split("=")[1:]))
else:
print(r2)
def drawR(self):
ycsv = []
xcsv = []
for i, name in enumerate(self.datasetsR):
name = name[0]
# just name; with mapset it would be long
self.yticksNames.append(name)
self.yticksPos.append(1) # TODO
xdata = []
ydata = []
for keys, values in self.timeDataR[name].items():
if keys in [
"temporalType",
"granularity",
"validTopology",
"unit",
"temporalDataType",
]:
continue
xdata.append(self.convert(values["start_datetime"]))
ydata.append(values["value"])
xcsv.append(values["start_datetime"])
if len(ydata) == ydata.count(None):
GError(
parent=self,
showTraceback=False,
message=_(
"Problem getting data from raster temporal"
" dataset. Empty list of values."
),
)
return
self.lookUp.AddDataset(yranges=ydata, xranges=xdata, datasetName=name)
color = next(self.colors)
self.plots.append(
self.axes2d.plot(
xdata, ydata, marker="o", color=color, label=self.plotNameListR[i]
)[0]
)
if self.linRegRaster.IsChecked():
self._drawSimpleLinRegLine(xdata=xdata, ydata=ydata)
if self.csvpath:
ycsv.append(ydata)
if self.csvpath:
self._writeCSV(xcsv, ycsv)
self._setLabels(self.timeDataR[name]["granularity"])
# legend
handles, labels = self.axes2d.get_legend_handles_labels()
self.axes2d.legend(loc=0)
def drawVCats(self):
ycsv = []
for i, name in enumerate(self.plotNameListV):
# just name; with mapset it would be long
labelname = name.replace("+", " ")
self.yticksNames.append(labelname)
name_cat = name.split("+")
name = name_cat[0]
self.yticksPos.append(1) # TODO
xdata = []
ydata = []
xcsv = []
for keys, values in self.timeDataV[name_cat[0]][name_cat[1]].items():
if keys in [
"temporalType",
"granularity",
"validTopology",
"unit",
"temporalDataType",
]:
continue
xdata.append(self.convert(values["start_datetime"]))
if values["value"] == "":
ydata.append(None)
else:
ydata.append(values["value"])
xcsv.append(values["start_datetime"])
if len(ydata) == ydata.count(None):
GError(
parent=self,
showTraceback=False,
message=_(
"Problem getting data from vector temporal"
" dataset. Empty list of values for cat "
"{ca}.".format(ca=name_cat[1].replace("cat", ""))
),
)
continue
self.lookUp.AddDataset(yranges=ydata, xranges=xdata, datasetName=name)
color = next(self.colors)
self.plots.append(
self.axes2d.plot(
xdata, ydata, marker="o", color=color, label=labelname
)[0]
)
if self.linRegVector.IsChecked():
self._drawSimpleLinRegLine(xdata=xdata, ydata=ydata)
if self.csvpath:
ycsv.append(ydata)
if self.csvpath:
self._writeCSV(xcsv, ycsv)
self._setLabels(self.timeDataV[name]["granularity"])
# legend
handles, labels = self.axes2d.get_legend_handles_labels()
self.axes2d.legend(loc=0)
self.listWhereConditions = []
def drawV(self):
ycsv = []
for i, name in enumerate(self.plotNameListV):
# just name; with mapset it would be long
self.yticksNames.append(self.attribute.GetValue())
self.yticksPos.append(0) # TODO
xdata = []
ydata = []
xcsv = []
for keys, values in self.timeDataV[name].items():
if keys in [
"temporalType",
"granularity",
"validTopology",
"unit",
"temporalDataType",
]:
continue
xdata.append(self.convert(values["start_datetime"]))
ydata.append(values["value"])
xcsv.append(values["start_datetime"])
if len(ydata) == ydata.count(None):
GError(
parent=self,
showTraceback=False,
message=_(
"Problem getting data from vector temporal"
" dataset. Empty list of values."
),
)
return
self.lookUp.AddDataset(yranges=ydata, xranges=xdata, datasetName=name)
color = next(self.colors)
self.plots.append(
self.axes2d.plot(xdata, ydata, marker="o", color=color, label=name)[0]
)
if self.linRegVector.IsChecked():
self._drawSimpleLinRegLine(xdata=xdata, ydata=ydata)
if self.csvpath:
ycsv.append(ydata)
if self.csvpath:
self._writeCSV(xcsv, ycsv)
self._setLabels(self.timeDataV[name]["granularity"])
# legend
handles, labels = self.axes2d.get_legend_handles_labels()
self.axes2d.legend(loc=0)
self.listWhereConditions = []
def OnRedraw(self, event=None):
"""Required redrawing."""
self.init()
self.csvpath = self.csvButton.GetValue()
self.header = self.headerCheck.IsChecked()
if os.path.exists(self.csvpath) and not self.overwrite:
dlg = wx.MessageDialog(
self,
_(
"{pa} already exists, do you want "
"to overwrite?".format(pa=self.csvpath)
),
_("File exists"),
wx.OK | wx.CANCEL | wx.ICON_QUESTION,
)
if dlg.ShowModal() != wx.ID_OK:
dlg.Destroy()
GError(
parent=self,
showTraceback=False,
message=_("Please change name of output CSV file or "),
)
return
dlg.Destroy()
datasetsR = self.datasetSelectR.GetValue().strip()
datasetsV = self.datasetSelectV.GetValue().strip()
if not datasetsR and not datasetsV:
return
try:
getcoors = self.coorval.coordsField.GetValue()
except:
try:
getcoors = self.coorval.GetValue()
except:
getcoors = None
if getcoors and getcoors != "":
try:
coordx, coordy = getcoors.split(",")
coordx, coordy = float(coordx), float(coordy)
except (ValueError, AttributeError):
try:
coordx, coordy = self.coorval.GetValue().split(",")
coordx, coordy = float(coordx), float(coordy)
except (ValueError, AttributeError):
GError(
parent=self,
message=_("Incorrect coordinates format, should be: x,y"),
showTraceback=False,
)
return
coors = [coordx, coordy]
if coors:
try:
self.poi = Point(float(coors[0]), float(coors[1]))
except GException:
GError(
parent=self,
message=_("Invalid input coordinates"),
showTraceback=False,
)
return
if not self.poi:
GError(
parent=self,
message=_("Invalid input coordinates"),
showTraceback=False,
)
return
bbox = self.region.get_bbox()
if not bbox.contains(self.poi):
GError(
parent=self,
message=_("Seed point outside the " "current region"),
showTraceback=False,
)
return
# check raster dataset
if datasetsR:
datasetsR = datasetsR.split(",")
try:
datasetsR = self._checkDatasets(datasetsR, "strds")
if not datasetsR:
return
except GException:
GError(
parent=self,
message=_("Invalid input raster dataset"),
showTraceback=False,
)
return
if not self.poi:
GError(
parent=self,
message=_("Invalid input coordinates"),
showTraceback=False,
)
return
self.datasetsR = datasetsR
# check vector dataset
if datasetsV:
datasetsV = datasetsV.split(",")
try:
datasetsV = self._checkDatasets(datasetsV, "stvds")
if not datasetsV:
return
except GException:
GError(
parent=self,
message=_("Invalid input vector dataset"),
showTraceback=False,
)
return
self.datasetsV = datasetsV
self._redraw()
def _redraw(self):
"""Readraw data.
Decides if to draw also 3D and adjusts layout if needed.
"""
if self.datasetsR:
self._getSTRDdata(self.datasetsR)
if self.datasetsV:
self._getSTVDData(self.datasetsV)
# axes3d are physically removed
if not self.axes2d:
self.axes2d = self.fig.add_subplot(1, 1, 1)
self._drawFigure()
def _checkDatasets(self, datasets, typ):
"""Checks and validates datasets.
Reports also type of dataset (e.g. 'strds').
:param list datasets: list of temporal dataset's name
:return: (mapName, mapset, type)
"""
validated = []
tDict = tgis.tlist_grouped(type=typ, group_type=True, dbif=self.dbif)
# nested list with '(map, mapset, etype)' items
allDatasets = [
[
[(map, mapset, etype) for map in maps]
for etype, maps in etypesDict.items()
]
for mapset, etypesDict in tDict.items()
]
# flatten this list
if allDatasets:
allDatasets = reduce(
lambda x, y: x + y, reduce(lambda x, y: x + y, allDatasets)
)
mapsets = tgis.get_tgis_c_library_interface().available_mapsets()
allDatasets = [
i for i in sorted(allDatasets, key=lambda l: mapsets.index(l[1]))
]
for dataset in datasets:
errorMsg = _("Space time dataset <%s> not found.") % dataset
if dataset.find("@") >= 0:
nameShort, mapset = dataset.split("@", 1)
indices = [
n
for n, (mapName, mapsetName, etype) in enumerate(allDatasets)
if nameShort == mapName and mapsetName == mapset
]
else:
indices = [
n
for n, (mapName, mapset, etype) in enumerate(allDatasets)
if dataset == mapName
]
if len(indices) == 0:
raise GException(errorMsg)
elif len(indices) >= 2:
dlg = wx.SingleChoiceDialog(
self,
message=_(
"Please specify the " "space time dataset " "<%s>." % dataset
),
caption=_("Ambiguous dataset name"),
choices=[
(
"%(map)s@%(mapset)s:"
" %(etype)s"
% {
"map": allDatasets[i][0],
"mapset": allDatasets[i][1],
"etype": allDatasets[i][2],
}
)
for i in indices
],
style=wx.CHOICEDLG_STYLE | wx.OK,
)
if dlg.ShowModal() == wx.ID_OK:
index = dlg.GetSelection()
validated.append(allDatasets[indices[index]])
else:
continue
else:
validated.append(allDatasets[indices[0]])
return validated
def OnHelp(self, event):
"""Function to show help"""
RunCommand(prog="g.manual", quiet=True, entry="g.gui.tplot")
def SetDatasets(
self,
rasters,
vectors,
coors,
cats,
attr,
title,
xlabel,
ylabel,
csvfile,
head,
overwrite,
):
"""Set the data
:param list rasters: a list of temporal raster dataset's name
:param list vectors: a list of temporal vector dataset's name
:param list coors: a list with x/y coordinates
:param list cats: a list with incld. categories of vector
:param str attr: name of attribute of vectror data
"""
if not (rasters or vectors) or not (coors or cats):
return
try:
if rasters:
self.datasetsR = self._checkDatasets(rasters, "strds")
if vectors:
self.datasetsV = self._checkDatasets(vectors, "stvds")
if not (self.datasetsR or self.datasetsV):
return
except GException:
GError(
parent=self,
message=_("Invalid input temporal dataset"),
showTraceback=False,
)
return
if coors:
try:
self.poi = Point(float(coors[0]), float(coors[1]))
except GException:
GError(
parent=self,
message=_("Invalid input coordinates"),
showTraceback=False,
)
return
try:
self.coorval.coordsField.SetValue(",".join(coors))
except:
self.coorval.SetValue(",".join(coors))
if self.datasetsV:
vdatas = ",".join(map(lambda x: x[0] + "@" + x[1], self.datasetsV))
self.datasetSelectV.SetValue(vdatas)
if attr:
self.attribute.SetValue(attr)
if cats:
self.cats.SetValue(cats)
if self.datasetsR:
self.datasetSelectR.SetValue(
",".join(map(lambda x: x[0] + "@" + x[1], self.datasetsR))
)
if title:
self.title.SetValue(title)
if xlabel:
self.x.SetValue(xlabel)
if ylabel:
self.y.SetValue(ylabel)
if csvfile:
self.csvpath = csvfile
self.header = head
self.overwrite = overwrite
self._redraw()
def OnVectorSelected(self, event):
"""Update the controlbox related to stvds"""
dataset = self.datasetSelectV.GetValue().strip()
name = dataset.split("@")[0]
mapset = dataset.split("@")[1] if len(dataset.split("@")) > 1 else ""
found = False
for each in tgis.tlist(type="stvds", dbif=self.dbif):
each_name, each_mapset = each.split("@")
if name == each_name:
if mapset and mapset != each_mapset:
continue
dataset = name + "@" + each_mapset
found = True
break
if found:
try:
vect_list = grass.read_command(
"t.vect.list", flags="u", input=dataset, column="name"
)
except Exception:
self.attribute.Clear()
GError(
parent=self,
message=_("Invalid input temporal dataset"),
showTraceback=False,
)
return
vect_list = list(set(sorted(vect_list.split())))
for vec in vect_list:
self.attribute.InsertColumns(vec, 1)
else:
self.attribute.Clear()
class LookUp:
"""Helper class for searching info by coordinates"""
def __init__(self, timeData, convert):
self.data = {}
self.timeData = timeData
self.convert = convert
def AddDataset(self, yranges, xranges, datasetName):
if len(yranges) != len(xranges):
GError(
parent=self,
showTraceback=False,
message=_("Datasets have different number of values"),
)
return
self.data[datasetName] = {}
for i in range(len(xranges)):
self.data[datasetName][xranges[i]] = yranges[i]
def GetInformation(self, x):
values = {}
for key, value in self.data.items():
if value[x]:
values[key] = [self.convert(x), value[x]]
if len(values) == 0:
return None
return self.timeData, values
def InfoFormat(timeData, values):
"""Formats information about dataset"""
text = []
for key, val in values.items():
etype = timeData[key]["temporalDataType"]
if etype == "strds":
text.append(_("Space time raster dataset: %s") % key)
elif etype == "stvds":
text.append(_("Space time vector dataset: %s") % key)
elif etype == "str3ds":
text.append(_("Space time 3D raster dataset: %s") % key)
text.append(_("Value for {date} is {val}".format(date=val[0], val=val[1])))
text.append("\n")
text.append(_("Press Del to dismiss."))
return "\n".join(text)
class DataCursor:
"""A simple data cursor widget that displays the x,y location of a
matplotlib artist when it is selected.
Source: https://stackoverflow.com/questions/4652439/
is-there-a-matplotlib-equivalent-of-matlabs-datacursormode/4674445
"""
def __init__(
self,
artists,
lookUp,
formatFunction,
convert,
tolerance=5,
offsets=(-30, 20),
display_all=False,
):
"""Create the data cursor and connect it to the relevant figure.
"artists" is the matplotlib artist or sequence of artists that will be
selected.
"tolerance" is the radius (in points) that the mouse click must be
within to select the artist.
"offsets" is a tuple of (x,y) offsets in points from the selected
point to the displayed annotation box
"display_all" controls whether more than one annotation box will
be shown if there are multiple axes. Only one will be shown
per-axis, regardless.
"""
self.lookUp = lookUp
self.formatFunction = formatFunction
self.offsets = offsets
self.display_all = display_all
if not np.iterable(artists):
artists = [artists]
self.artists = artists
self.convert = convert
self.axes = tuple(set(art.axes for art in self.artists))
self.figures = tuple(set(ax.figure for ax in self.axes))
self.annotations = {}
for ax in self.axes:
self.annotations[ax] = self.annotate(ax)
for artist in self.artists:
artist.set_pickradius(tolerance)
for fig in self.figures:
fig.canvas.mpl_connect("pick_event", self)
fig.canvas.mpl_connect("key_press_event", self.keyPressed)
def keyPressed(self, event):
"""Key pressed - hide annotation if Delete was pressed"""
if event.key != "delete":
return
for ax in self.axes:
self.annotations[ax].set_visible(False)
event.canvas.draw()
def annotate(self, ax):
"""Draws and hides the annotation box for the given axis "ax"."""
annotation = ax.annotate(
self.formatFunction,
xy=(0, 0),
ha="center",
xytext=self.offsets,
va="bottom",
textcoords="offset points",
bbox=dict(boxstyle="round,pad=0.5", fc="yellow", alpha=0.7),
arrowprops=dict(arrowstyle="->", connectionstyle="arc3,rad=0"),
annotation_clip=False,
multialignment="left",
)
annotation.set_visible(False)
return annotation
def __call__(self, event):
"""Intended to be called through "mpl_connect"."""
# Rather than trying to interpolate, just display the clicked coords
# This will only be called if it's within "tolerance", anyway.
x, y = event.mouseevent.xdata, event.mouseevent.ydata
annotation = self.annotations[event.artist.axes]
if x is not None:
if not self.display_all:
# Hide any other annotation boxes...
for ann in self.annotations.values():
ann.set_visible(False)
if "Line2D" in str(type(event.artist)):
xData = []
for a in event.artist.get_xdata():
try:
d = self.convert(a)
except:
d = a
xData.append(d)
x = xData[np.argmin(abs(xData - x))]
info = self.lookUp.GetInformation(x)
ys = list(zip(*info[1].values()))[1]
if not info:
return
# Update the annotation in the current axis..
annotation.xy = x, max(ys)
text = self.formatFunction(*info)
annotation.set_text(text)
annotation.set_visible(True)
event.canvas.draw()
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