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bin/grinder
bin/grinder.pod
CHANGES
galaxy/all_fasta.loc.sample
galaxy/Galaxy_readme.txt
galaxy/grinder.xml
galaxy/stderr_wrapper.py
galaxy/tool_data_table_conf.xml.sample
inc/Module/AutoInstall.pm
inc/Module/Install.pm
inc/Module/Install/AuthorRequires.pm
inc/Module/Install/AutoInstall.pm
inc/Module/Install/AutoLicense.pm
inc/Module/Install/AutoManifest.pm
inc/Module/Install/Base.pm
inc/Module/Install/Can.pm
inc/Module/Install/Fetch.pm
inc/Module/Install/Include.pm
inc/Module/Install/Makefile.pm
inc/Module/Install/Metadata.pm
inc/Module/Install/PodFromEuclid.pm
inc/Module/Install/ReadmeFromPod.pm
inc/Module/Install/Scripts.pm
inc/Module/Install/Win32.pm
inc/Module/Install/WriteAll.pm
lib/Grinder.pm
lib/Grinder/Database.pm
lib/Grinder/KmerCollection.pm
LICENSE
Makefile.PL
man/average_genome_size.1
man/change_paired_read_orientation.1
man/grinder.1
MANIFEST This list of files
META.yml
MYMETA.json
MYMETA.yml
README
README.htm
t/00-load.t
t/01-shotgun.t
t/02-mates.t
t/03-amplicon.t
t/04-abundances.t
t/05-forbidden.t
t/06-seed.t
t/07-diversity.t
t/08-shared.t
t/09-permuted.t
t/10-quality.t
t/11-tracking.t
t/12-read-length.t
t/13-insert-length.t
t/14-genome-length-bias.t
t/15-multiplex.t
t/16-profile.t
t/17-libraries.t
t/18-amplicon-multiple.t
t/19-gene-copy-bias.t
t/20-community-structure.t
t/21-errors.t
t/22-homopolymers.t
t/23-chimeras.t
t/24-mate-orientation.t
t/25-molecule-type.t
t/26-combined-errors.t
t/27-stdin.t
t/28-revcom-amplicon.t
t/29-kmer-collection.t
t/30-kmer-chimeras.t
t/31-shotgun-chimeras.t
t/32-database.t
t/data/abundance_kmers.txt
t/data/abundances.txt
t/data/abundances2.txt
t/data/abundances_multiple.txt
t/data/amplicon_database.fa
t/data/database_dna.fa
t/data/database_mixed.fa
t/data/database_protein.fa
t/data/database_rna.fa
t/data/dirty_database.fa
t/data/forward_primer.fa
t/data/forward_reverse_primers.fa
t/data/homopolymer_database.fa
t/data/kmers.fa
t/data/kmers2.fa
t/data/mids.fa
t/data/multiple_amplicon_database.fa
t/data/nested_amplicon_database.fa
t/data/oriented_database.fa
t/data/profile.txt
t/data/revcom_amplicon_database.fa
t/data/reverse_forward_primers.fa
t/data/reverse_primer.fa
t/data/shotgun_database.fa
t/data/shotgun_database_extended.fa
t/data/shotgun_database_shared_kmers.fa
t/data/single_amplicon_database.fa
t/data/single_seq_database.fa
t/pod.t
t/TestUtils.pm
utils/average_genome_size
utils/change_paired_read_orientation
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