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.. _gmx-reference-manual-rst:
****************
Reference Manual
****************
.. highlight:: bash
.. todo:: this needs to be carefully checked that I didn't mess anything up too bad
.. ifconfig:: gmx_image_convert == 'possible'
This part of the documentation covers implementation details of |Gromacs|.
For quick simulation set-up and short explanations,
please refer to the :ref:`User guide <user guide>`.
Help with the installation of |Gromacs| can be found in the
:ref:`Install guide <install guide>`.
If you want to help with developing |Gromacs|, your are most welcome
to read up on the :ref:`Developer Guide <dev guide>` and continue
right away with coding for |Gromacs|.
.. toctree::
:maxdepth: 2
preface
introduction
definitions
algorithms
functions
topologies
file-formats
special
run-parameters
analysis
details
averages
references
.. ifconfig:: gmx_image_convert == 'impossible'
The manual could not be properly build because we could not
convert the images for proper display without Imagemagick.
The rest of the documentation is still there, but this part here will be missing.
For quick simulation set-up and short explanations,
please refer to the :ref:`User guide <user guide>`.
Help with the installation of |Gromacs| can be found in the
:ref:`Install guide <install guide>`.
If you want to help with developing |Gromacs|, your are most welcome
to read up on the :ref:`Developer Guide <dev guide>` and continue
right away with coding for |Gromacs|.
.. toctree::
:maxdepth: 2
preface
introduction
definitions
topologies
file-formats
run-parameters
details
averages
references
|
