1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
|
/***********************************************/
/**
* @file instrumentFilter.cpp
*
* @brief Filter any instrument data arc wise.
*
* @author Andreas Kvas
* @date 2016-06-20
*
*/
/***********************************************/
// Latex documentation
#define DOCSTRING docstring
static const char *docstring = R"(
This program filter selected data columns of \configFile{inputfileInstrument}{instrument}
with \configClass{digitalFilter}{digitalFilterType} arc wise.
)";
/***********************************************/
#include "programs/program.h"
#include "parser/dataVariables.h"
#include "files/fileInstrument.h"
#include "classes/digitalFilter/digitalFilter.h"
/***** CLASS ***********************************/
/** @brief Filter any intrument file arc wise.
* @ingroup programsGroup */
class InstrumentFilter
{
public:
void run(Config &config, Parallel::CommunicatorPtr comm);
};
GROOPS_REGISTER_PROGRAM(InstrumentFilter, PARALLEL, "filter any instrument file arc wise", Instrument)
/***********************************************/
void InstrumentFilter::run(Config &config, Parallel::CommunicatorPtr comm)
{
try
{
FileName fileNameOut, fileNameIn;
DigitalFilterPtr filter;
UInt startData, countData = MAX_UINT;
readConfig(config, "outputfileInstrument", fileNameOut, Config::MUSTSET, "", "");
readConfig(config, "inputfileInstrument", fileNameIn, Config::MUSTSET, "", "");
readConfig(config, "digitalFilter", filter, Config::MUSTSET, "", "");
readConfig(config, "startDataFields", startData, Config::DEFAULT, "0", "start");
readConfig(config, "countDataFields", countData, Config::OPTIONAL, "", "number of data fields (default: all after start)");
if(isCreateSchema(config)) return;
logStatus<<"read instrument data <"<<fileNameIn<<"> and filter"<<Log::endl;
InstrumentFile instrumentFile(fileNameIn);
std::vector<Arc> arcList(instrumentFile.arcCount());
Parallel::forEach(arcList, [&](UInt arcNo)
{
Arc arc = instrumentFile.readArc(arcNo);
if(arc.size() == 0)
return arc;
Matrix data = arc.matrix();
countData = std::min(countData, data.columns()-1-startData);
copy(filter->filter(data.column(1+startData, countData)), data.column(1+startData, countData));
return Arc(arc.times(), data, arc.getType());
}, comm);
if(Parallel::isMaster(comm))
{
logStatus<<"write instrument data to file <"<<fileNameOut<<">"<<Log::endl;
InstrumentFile::write(fileNameOut, arcList);
Arc::printStatistics(arcList);
}
}
catch(std::exception &e)
{
GROOPS_RETHROW(e)
}
}
/***********************************************/
|
