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#!/bin/bash
set -e
pkg="gsort"
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
gunzip -r *
echo "Test 1"
gsort a.bed 3Y21.genome
echo "PASS"
echo "Test 2"
gsort -c remapchr.txt chra.bed 3Y21.genome
echo "PASS"
echo "Test 3"
gsort a.bed 123Y.genome
echo "PASS"
echo "Test 4"
gsort track-browser.bed 123Y.genome
echo "PASS"
echo "Test 5"
gsort --parent test.gff test.gff.genome
echo "PASS"
echo "Test 6"
gsort test.vcf-like.tsv test.vcf-like.genome
echo "PASS"
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