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# -*- coding: utf-8 -*-
#
# test_octave.py
#
# purpose: Quick "compare test" with octave results.
# author: Filipe P. A. Fernandes
# e-mail: ocefpaf@gmail
# web: http://ocefpaf.tiddlyspot.com/
# created: 13-Jun-2013
# modified: Tue 02 Jul 2013 07:45:17 PM BRT
#
# obs: This is different from `test_check_values.py`, that tests
# against the results in the docs, `test_octave.py` uses same input values to
# run both python and Matlab versions (using Octave).
#
# This is not a thorough test, just an "ad hoc" test to compare when a new
# Matlab version is released.
#
import os
import sys
from collections import OrderedDict
import numpy as np
from oct2py import octave
from oct2py._utils import Oct2PyError
import gsw
try:
path = sys.argv[1]
except IndexError:
path = "./matlab_gsw_v3_03"
# We have to supply a fake superiorfloat function for octave.
# We are writing it in the local directory, which is not a nice
# thing to do; maybe this can be improved later.
_sfloat = """function out = superiorfloat(varargin)
out = 'double';
"""
open('superiorfloat.m', 'wt').write(_sfloat)
if not os.path.exists(path):
raise ValueError("matlab gsw path %s not found" % path)
_ = octave.addpath(octave.genpath(path))
_ = octave.addpath('./')
def compare_results(name, function, args):
args = [values.get(arg) for arg in args]
print(name)
try: # Python.
res = function(*args)
except:
print('%s: python runtime error' % name)
raise
return 'no_python'
nout = 1
if isinstance(res, tuple):
nout = len(res)
res = res[0]
try: # Octave.
val = octave.call('gsw_%s' % name, *args, verbose=True, nout=nout)
if nout > 1:
val = val[0]
except Oct2PyError:
print('%s: Octave runtime error' % name)
print("python:\n%s" % res)
return 'no_octave'
try:
val = val.flatten()
perfect = (val == res).all()
except:
print('%s: Comparison failed' % name)
print("octave:\n%s" % val)
print("python:\n%s" % res)
return 'no_comparison'
if np.allclose(val, res, rtol=1e-15, atol=0):
print('%s: Passed' % name)
return 'passed'
else:
print('%s: Failed' % name)
print("octave:\n%s" % val)
print("python:\n%s" % res)
return 'failed'
print('')
values = dict(C=np.array([34.5487, 34.7275, 34.8605, 34.6810, 34.568, 34.56]),
t=np.array([28.7856, 28.4329, 22.8103, 10.2600, 6.8863, 4.4036]),
p=np.array([10., 50., 125., 250., 600., 1000.]),
SP=np.array([34.5487, 34.7275, 34.8605, 34.6810, 34.5680,
34.5600]),
SA=np.array([34.7118, 34.8915, 35.0256, 34.8472, 34.7366,
34.7324]),
CT=np.array([28.7856, 28.4329, 22.8103, 10.2600, 6.8863,
4.4036]),
rho=np.array([1021.8484, 1022.2647, 1024.4207, 1027.7841,
1029.8287, 1031.9916]),
ps=0, pt=0, pp=0,
lat=np.array([4., 4., 4., 4., 4., 4.]),
lon=np.array([188., 188., 188., 188., 188., 188.]),
pt0=np.array([28.8099, 28.4392, 22.7862, 10.2262, 6.8272,
4.3236]),
spycnl=np.array([21.8482, 22.2647, 24.4207, 27.7841, 29.8287,
31.9916]),
A='gn', # or s2 for sigma2; but then spycnl would need to change
# Also, the matlab code is incorrect for the s2 case.
p_i=np.array([500.0, 600.0, 700.0]),
# Baltic.
SAb=np.array([6.6699, 6.7738, 6.9130, 7.3661, 7.5862, 10.3895]),
SPb=np.array([6.5683, 6.6719, 6.8108, 7.2629, 7.4825, 10.2796]),
latb=np.array([59., 59., 59., 59., 59., 59.]),
lonb=np.array([20., 20., 20., 20., 20., 20.])
)
# Functions.
library = OrderedDict({
# library.py
'deltaSA_atlas': (gsw.library.deltaSA_atlas, ('p', 'lon', 'lat')),
'enthalpy_SSO_0_p': (gsw.library.enthalpy_SSO_0_p, ('p')),
'entropy_part': (gsw.library.entropy_part, ('SA', 't', 'p')),
'entropy_part_zerop': (gsw.library.entropy_part_zerop, ('SA', 'pt0')),
'Fdelta': (gsw.library.Fdelta, ('p', 'lon', 'lat')),
'gibbs': (gsw.library.gibbs, ('ps', 'pt', 'pp', 'SA', 't', 'p')),
'gibbs_pt0_pt0': (gsw.library.gibbs_pt0_pt0, ('SA', 'pt0')),
'Hill_ratio_at_SP2': (gsw.library.Hill_ratio_at_SP2, ('t')),
'infunnel': (gsw.library.infunnel, ('SA', 'CT', 'p')),
# FIXME: There is a problem with the argument handling in interp_SA_CT.
'interp_ref_cast': (gsw.library.interp_ref_cast, ('spycnl', 'A')),
'interp_SA_CT': (gsw.library.interp_SA_CT, ('SA', 'CT', 'p', 'p_i')),
'SAAR': (gsw.library.SAAR, ('p', 'lon', 'lat')),
'SA_from_SP_Baltic': (gsw.library.SA_from_SP_Baltic, ('SPb', 'lonb',
'latb')),
'specvol_SSO_0_p': (gsw.library.specvol_SSO_0_p, ('p')),
'SP_from_SA_Baltic': (gsw.library.SP_from_SA_Baltic, ('SAb', 'lonb',
'latb')),
# thermodynamics_from_t.py
#'adiabatic_lapse_rate_from_t': (gsw.adiabatic_lapse_rate_from_t,
#('SA', 't', 'p')),
'alpha_wrt_CT_t_exact': (gsw.alpha_wrt_CT_t_exact, ('SA', 't', 'p')),
'alpha_wrt_pt_t_exact': (gsw.alpha_wrt_pt_t_exact, ('SA', 't', 'p')),
'alpha_wrt_t_exact': (gsw.alpha_wrt_t_exact, ('SA', 't', 'p')),
'beta_const_CT_t_exact': (gsw.beta_const_CT_t_exact, ('SA', 't', 'p')),
'beta_const_pt_t_exact': (gsw.beta_const_pt_t_exact, ('SA', 't', 'p')),
'beta_const_t_exact': (gsw.beta_const_t_exact, ('SA', 't', 'p')),
'chem_potential_relative_t_exact': (gsw.chem_potential_relative_t_exact,
('SA', 't', 'p')),
'chem_potential_salt_t_exact': (gsw.chem_potential_salt_t_exact,
('SA', 't', 'p')),
'chem_potential_water_t_exact': (gsw.chem_potential_water_t_exact,
('SA', 't', 'p')),
'cp_t_exact': (gsw.cp_t_exact, ('SA', 't', 'p')),
#'deltaSA_from_rho_t_exact': (gsw.deltaSA_from_rho_t_exact,
#('rho', 'SP', 't', 'p')),
'dynamic_enthalpy_t_exact': (gsw.dynamic_enthalpy_t_exact,
('SA', 't', 'p')),
'enthalpy_t_exact': (gsw.enthalpy_t_exact, ('SA', 't', 'p')),
'entropy_t_exact': (gsw.entropy_t_exact, ('SA', 't', 'p')),
'Helmholtz_energy_t_exact': (gsw.Helmholtz_energy_t_exact,
('SA', 't', 'p')),
'internal_energy_t_exact': (gsw.internal_energy_t_exact, ('SA', 't', 'p')),
'isochoric_heat_cap_t_exact': (gsw.isochoric_heat_cap_t_exact,
('SA', 't', 'p')),
'kappa_const_t_exact': (gsw.kappa_const_t_exact, ('SA', 't', 'p')),
'kappa_t_exact': (gsw.kappa_t_exact, ('SA', 't', 'p')),
'osmotic_coefficient_t_exact': (gsw.osmotic_coefficient_t_exact,
('SA', 't', 'p')),
'osmotic_pressure_t_exact': (gsw.osmotic_pressure_t_exact,
('SA', 't', 'pw')),
'pot_rho_t_exact': (gsw.pot_rho_t_exact, ('SA', 't', 'p', 'p_ref')),
'rho_t_exact': (gsw.rho_t_exact, ('SA', 't', 'p')),
'SA_from_rho_t_exact': (gsw.SA_from_rho_t_exact, ('rho', 't', 'p')),
#'SA_from_rho_t': (gsw.SA_from_rho_t, ('rho', 't', 'p')),
'sigma0_pt0_exact': (gsw.sigma0_pt0_exact, ('SA', 'pt0')),
'sound_speed_t_exact': (gsw.sound_speed_t_exact, ('SA', 't', 'p')),
'specvol_anom_t_exact': (gsw.specvol_anom_t_exact, ('SA', 't', 'p')),
'specvol_t_exact': (gsw.specvol_t_exact, ('SA', 't', 'p')),
't_from_rho_exact': (gsw.t_from_rho_exact, ('rho', 'SA', 'p')),
't_maxdensity_exact': (gsw.t_maxdensity_exact, ('SA', 'p')),
# absolute_salinity_sstar_ct.py
'SA_from_SP': (gsw.SA_from_SP, ('SP', 'p', 'lon', 'lat'))})
def iteritems(d):
'Factor-out Py2-to-3 differences in dictionary item iterator methods'
try:
return d.iteritems()
except AttributeError:
return d.items()
if __name__ == '__main__':
outcomes = ['passed', 'no_octave', 'no_python', 'failed', 'no_comparison']
results = dict([(k, list()) for k in outcomes])
for name, (function, args) in iteritems(library):
ret = compare_results(name=name, function=function, args=args)
results[ret].append(name)
#os.remove('superiorfloat.m')
print('\nSummary:')
print('passed:\n %s' % '\n '.join(results['passed']))
print('octave call failed:\n %s' % '\n '.join(results['no_octave']))
print('python call failed:\n %s' % '\n '.join(results['no_python']))
print('results did not match:\n %s' % '\n '.join(results['failed']))
print('comparison failed:\n %s' % '\n '.join(results['no_comparison']))
print('')
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