File: ChangeLog

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2015-05-27  warnes

	* [r2039] R/mixedsort.R, man/mixedsort.Rd: Add roman numeral
	  support to mixedorder() and mixedsort().
	* [r2037] man/asc.Rd: Add asc() and chr() functions for converting
	  between characters and ASCII codes
	* [r2036] R/roman2int.R: roman2int() now returns NA for invalid
	  roman numeral strings instead of generating an error.
	* [r2035] NAMESPACE: Add asc(), chr(), assignEdgewise(),
	  unByteCode(), and
	  unByteCodeAssign() to package NAMESPACE.
	* [r2034] R/asc.R: Add asc() and chr() functions for converting
	  between characters and ASCII codes

2015-05-26  warnes

	* [r2030] inst/ChangeLog: Add changelog to svn repository

2015-05-25  warnes

	* [r2029] tests/test_ddirichlet.R: Add library call.
	* [r2028] man/unByteCode.Rd: Fix typo and add documentation for
	  argument 'name'.
	* [r2027] man/mixedsort.Rd: Fix typo.
	* [r2026] man/mixedsort.Rd: Add description of blanklast argument,
	  fix typo.
	* [r2025] man/quantcut.Rd: Change usage to match actual definition.
	* [r2024] man/mixedsort.Rd: Note characters sorting ignores case.
	* [r2023] man/mixedsort.Rd: Remove '...' from arglist to match
	  source code.
	* [r2022] man/mixedsort.Rd: Replace unicode quotes with \code{..}.

2015-05-23  warnes

	* [r2021] tests/test_ddirichlet.R: Add regression test ddirichlet()
	  bug for x[i]=0, alpha[i]=1:
	  ddirichlet(x, alpha) was returning NA rather than 0.
	* [r2020] R/dirichlet.R: ddirichlet() was incorrectly returning NA
	  when x[i]=0 and
	  alpha[i]=1. In this case, the one calculation became (-Inf * 0),
	  which R evaluates to NaN. The correction is to detect this case
	  and
	  substitute -Inf instead of NaN.

2015-05-08  warnes

	* [r2019] R/mixedsort.R: Summary: Speed up mixedorder by moving
	  suppressWarnings outside of
	  lapply loops. (Suggestion by Henrik Bengtsson.)

2015-05-02  warnes

	* [r2018] Rename 'trunk' to 'pkg' for compatibility with R-forge
	* [r2017] Minor layout change.
	* [r2016] Remove stray 'svn' that was inserted into the code.
	* [r2015] Add man page for unByteCode(), assignEdgeWise(), and
	  unByteCodeAssign()

2015-04-28  warnes

	* [r1976] Changes to mixedsort():
	  - Hands off objects that are not character vectors to the default
	  sort.
	  - Add 'decreasing', 'na.last', and 'blank.last' arguments.
	* [r1975] Add private function 'checkReverseDependencies'.

2015-04-23  warnes

	* [r1950] Update NEWS and ChangeLog
	* [r1949] - The 'q' argument to quantcut()'s 'q' now accept an
	  integer
	  indicating the number of equally spaced quantile groups to
	  create. (Suggestion and patch submitted by Ryan C. Thompson.)
	* [r1946] Revers accidental text deletion:
	* [r1945] Update for gtools 3.4.3
	* [r1944] Remove debugging code and stray browser() call

2015-04-14  warnes

	* [r1923] Fix typo

2015-04-09  warnes

	* [r1921] Update gtools ChangeLog
	* [r1920] Move first()/last()/left()/right() to gdata.
	  Add new functions na.replace() and loadedPackages().
	  Add more text to package description.

2015-04-08  warnes

	* [r1919] Move first/last/left/right to from gtools to gdata

2015-04-06  warnes

	* [r1918] Correct URL
	* [r1917] Update NEWS and ChangeLog for gtools 3.5.0
	* [r1916] Add ChangeLog files to repository
	* [r1915] Implement fix to keywords() needed for R-3.4.1, as
	  suggested by Kurt
	  Hornik.
	* [r1914] - Export S3 methods for first(), last(), left() and
	  right().
	  - Ensure code matches man page for first(), last(), left(), and
	  right().

2014-10-09  warnes

	* [r1897] Update for 3.5.0 release of gtools
	* [r1896] Make right() and left() S3 methods for classes data.frame
	  and matrix

2014-08-27  warnes

	* [r1872] Fix man page
	* [r1871] Finish adding first(), last(), left(), and right().
	* [r1870] Add functions first(), last(), left(), and right().

2014-05-28  warnes

	* [r1816] Update for gtools 3.4.1
	* [r1815] Add test to ensure smartbind() properly handles Date
	  columns.
	* [r1814] smartbind: Convert non-native type columns (except
	  factor) to character.

2014-04-18  arnima

	* [r1813] Main arg is 'x' like showNonASCII(x), preformatted notes
	  instead of verb

2014-04-17  warnes

	* [r1810] Update ASCIIfy man page to match source code and add
	  keywords
	* [r1809] Update NEWS for gtools 3.4.0
	* [r1808] Add ASCIIfy function posted to RDevel by Arni Magnusson

2014-03-01  warnes

	* [r1776] Fix cut-and-paste error.
	* [r1775] Update files for gtools 3.3.1 release
	* [r1774] Fix bug in gtools::mixedorder regular expression for
	  regognizing numbers. (Periods weren't escaped).

2014-02-11  warnes

	* [r1773] Create and use locate copy of tools:::.split_op_version.
	* [r1772] Update for gtools 3.3.0.
	* [r1771] Fix arguments
	* [r1770] Update arguments to match code.
	* [r1769] Add getDependencies() function to return a list of
	  package dependencies.

2014-01-14  warnes

	* [r1768] Update for bug-fix release
	* [r1767] Add test file for binsearch() function.
	* [r1766] Fixed bug where binsearch() returned the wrong endpoint &
	  value when the found value was at the upper endpoint.

2014-01-13  warnes

	* [r1765] Fix typo

2014-01-11  warnes

	* [r1764] Update for gtools release 3.2.0
	* [r1763] fixes for R CMD check
	* [r1762] Fixes for gtools release 3.2.0

2013-12-23  warnes

	* [r1761] Extend the keywords() function to return keywords
	  associated with a specified topic via 'keywords(topic)'.
	* [r1760] Add keyword.
	* [r1759] Add stars.pval() function to convert p-values into
	  significance symbols.

2013-11-26  warnes

	* [r1748] mixedorder() was failing to correctly handle numbers
	  including
	  decimals due to a faulty regular expression. Prior to the fix:
	  
	  > drr
	  [1] "Dose 0.3 mg" "Dose 0.04 mg" "Dose 0.5 mg"
	  > gtools::mixedsort(drr)
	  [1] "Dose 0.3 mg" "Dose 0.04 mg" "Dose 0.5 mg"
	  
	  After the fix:
	  
	  > drr
	  [1] "Dose 0.3 mg" "Dose 0.04 mg" "Dose 0.5 mg"
	  > mixedsort(drr)
	  [1] "Dose 0.04 mg" "Dose 0.3 mg" "Dose 0.5 mg"
	  
	  In addition, an optimization was added that checked if the input
	  vector
	  was numeric. If so, simply use the existing base::order function.

2013-11-18  warnes

	* [r1747] Use ".Deprecated" instead of warning.

2013-11-06  warnes

	* [r1746] Update files for gtools 3.1.1
	* [r1745] Fix problem with mixedorder/mixedsort when there is only
	  zero or one elements in the vector.

2013-09-23  warnes

	* [r1716] Comment out empty sections in gtools-deprecated.Rd
	* [r1715] Update files for gtools 3.1.0 release
	* [r1714] Make 'addLast()' defunct.
	* [r1713] Mark 'addLast()' as defunct and move 'lastAdd()' function
	  to a separate file.
	* [r1712] Update for gtools 3.0.1 release
	* [r1711] Use 'suppressWarnings() instead of 'options(warn=-1)' in
	  'mixedorder()'.

2013-07-07  warnes

	* [r1705] Fix typo.

2013-07-06  warnes

	* [r1704] Fix Rd warning.
	* [r1703] Include lastAdd in NAMESPACE
	* [r1702] Change assert from deprecated to defunct.
	* [r1701] Improve deprecation message
	* [r1700] Update for gtools 3.0.0
	* [r1699] Create new function lastAdd to replace addLast and mark
	  addLast as deprecated.

2013-07-05  warnes

	* [r1698] Point out that addLast() modifies the value of .Last in
	  the global environment.
	* [r1697] Point out that addLast() modifies the value of .Last in
	  the global environment.
	* [r1696] Update for gtools 2.7.2 mark 2
	* [r1695] Remove cross-reference to (obsolete?) moc package
	* [r1694] Update for gtools 2.7.2
	* [r1693] Update for R version 3.0.0 and later

2013-03-17  warnes

	* [r1640] Fix error in smartbind: factor levels were not being
	  handled if the factor column was not present in the first data
	  frame.

2012-06-19  warnes

	* [r1570] Update for gtools 2.7.0.
	* [r1569] Document new 'verbose' argument to smartbind().
	* [r1568] Clean up R CMD check warnings.

2012-05-04  warnes

	* [r1529] smartbind(): Improve handling of factors and ordered
	  factors.

2011-10-05  warnes

	* [r1518] Update version number for release
	* [r1517] Add 'sep' argument to smartbind() to allow specification
	  of character used to separate components of constructed names

2011-09-28  warnes

	* [r1513] smartbind(): Prevent coersion to data frame from mangling
	  column names.
	* [r1512] Add 'fill' argument to smartbind() to specify a value to
	  use for
	  missing entries.
	* [r1511] Add 'fill' argument to smartbind() to specify a value to
	  use for
	  missing entries.

2010-08-14  warnes

	* [r1451] Modify mixedorder()/mixedsort() to better handle strings
	  containing multiple periods, like version numbers (e.g 1.1.2,
	  1.2.1. 1.1.1.1).

2010-05-01  warnes

	* [r1434] Update version number for new release
	* [r1433] Change Greg's email address to greg@warnes.net
	* [r1432] Fix error in checkRVersion()

2010-04-28  ggrothendieck2

	* [r1431] fixed problems with R CMD CHECK

2009-05-09  warnes

	* [r1328] Escape $ in .Rd file to avoid latex issues
	* [r1327] Update NEWS and create softlinks for NEWS and ChangeLog
	  in top level directory
	* [r1326] Move actual NEWS file into inst.
	* [r1325] Update Greg's email address and fix Rd syntax errors

2009-02-16  warnes

	* [r1313] Correct windows make flags as suggested by Brian Ripley.

2008-08-15  warnes

	* [r1303] Add keywords() function to show /doc/KEYWORDS file

2008-05-29  warnes

	* [r1285] Add newVersionAvailable() function to compare running and
	  latest available R versions

2008-05-26  warnes

	* [r1284] Update license specification
	* [r1283] Remove 'assert' man page

2008-05-22  warnes

	* [r1282] Finish rename of assert.R to assert-depricated.Rd
	* [r1281] Add checkRVersion.R file
	* [r1280] Rename again to get correct extension!
	* [r1279] Update NEWS for 2.5.0
	* [r1278] Add man page for checkRVersion
	* [r1277] Rename assert-deprecated.R to assert.R to meet R file
	  name requirements.
	* [r1276] Add checkRVersion to NAMESPACE, and increment version in
	  DESCRIPTION.
	* [r1275] Remove broken SEE LSO reference

2008-04-12  warnes

	* [r1259] Improve text explanation of how defmacro() and strmacro()
	  differ from
	  function().
	* [r1258] assert() is now deprecated in favor of base::stopifnot()
	* [r1257] Rename 'assert.R' to 'deprecated.R'.
	* [r1256] Assert is now deprecated in favor of base::stopifnot(),
	  so add call to
	  .Deprecated() to inform the user.

2007-11-30  warnes

	* [r1228] Update defnitions of odd() and even() to use modulus
	  operator instead of division. Prettier, I think, :-D

2007-08-08  warnes

	* [r1121] Fix bug identified by R-2.6's check routings in
	  binsearch()
	* [r1120] Add the binsearch(), previously in the genetics package.

2007-07-18  ggorjan

	* [r1100] typo fixed

2007-04-12  warnes

	* [r1088] Add ask() function to prompt the user and collect a
	  single response.

2007-04-07  warnes

	* [r1087] Fix improper escapes in regexp detected by R 2.5.0
	  package check.

2007-03-23  warnes

	* [r1083] Allow permutations for r>n provided repeats.allowed=TRUE

2006-11-28  warnes

	* [r1023] Replace F with FALSE in smartbind example.

2006-11-27  warnes

	* [r1022] Replace T with TRUE in smartbind example
	* [r1021] Temprary remove to reset binary flag
	* [r1020] Temprary remove to reset binary flag
	* [r1019] Add smartbind() to list of exported functions, and add
	  corresponding
	  documentation file.
	* [r1018] Update my email address

2006-11-14  ggorjan

	* [r1012] Removed executable property

2006-08-02  warnes

	* [r977] Update my email address

2006-05-05  nj7w

	* [r958] Fixed minor typo - in {value} - n was replaced by r
	* [r957] Fixed minor typos

2006-03-01  warnes

	* [r903] Add smartbind function

2006-01-18  warnes

	* [r845] Add concept tags to make mixedsort easier to locate.

2005-12-21  warnes

	* [r837] Update version number and date
	* [r836] Note changes for 2.2.3
	* [r835] Should now work on Windows

2005-12-20  warnes

	* [r834] Temporary fix to allow setTCPNoDelay.c to compile on
	  Windows. If compiled on windows calling setTCPNoDelay will just
	  raise an error.

2005-12-14  warnes

	* [r813] Change C++ comment to standard comment

2005-12-13  nj7w

	* [r810] *** empty log message ***
	* [r809] Updated NEWS and removed ChangeLog

2005-12-12  nj7w

	* [r800] Updated version for CRAN release

2005-12-08  warnes

	* [r790] Add C source code for setTCPNoDelay.

2005-12-01  nj7w

	* [r776] Updated Greg's email address

2005-11-29  warnes

	* [r769] Add UseDynLib to NAMESPACE so the shared library gets
	  properly loaded.
	* [r768] - Remove debugging comments
	  - Change return value on success to "Success".

2005-11-22  warnes

	* [r758] NAMESPACE
	* [r757] Update news for 2.2.1 release.
	* [r756] Fixes for R CMD check
	* [r755] Add setTCPNoDelay() function and documentation
	* [r745] New function 'addLast' that adds functions to R's .Last()
	  so that
	  they will be executed when R is terminating.

2005-09-22  warnes

	* [r678] More changes for strmacro(), also changes for 2.1.1
	  release
	* [r677] Add strmaco() which defines functions that use strings for
	  macro definition

2005-09-21  warnes

	* [r676] Add support for DOTS/... arguments to defmacro

2005-09-12  nj7w

	* [r671] Updated Greg's email

2005-09-02  nj7w

	* [r653] Exported assert
	* [r652] Updated the version number
	* [r651] Added NEWS
	* [r650] Added ChangeLog
	* [r649] Fixed syntax errors

2005-09-02  warnes

	* [r648] Add assert() and documentation
	* [r647] Fix problem in defmacro.Rd file: don't use \code{} in the
	  example section.

2005-08-31  warnes

	* [r645] Adding the defmacro() function, extracted from
	  
	  Lumley T. "Programmer's Niche: Macros in {R}", R News, 2001, Vol
	  1,
	  No. 3, pp 11--13, \url{http://CRAN.R-project.org/doc/Rnews/}
	* [r642] Add stand-alone DESCRIPTION file and remove old
	  DESCRIPTION.in file.

2005-06-13  nj7w

	* [r626] Fixed a bug in mixedsort - check if "which.na" and
	  "which.blank" is numeric(0) before subsetting the datasets.

2005-06-09  nj7w

	* [r625] Updating the version number, and various help files to
	  synchronize splitting of gregmisc bundle in 4 individual
	  components.

2005-05-10  warnes

	* [r619] Fix handling of NA's in mixedorder. We were using a high
	  UTF character to try
	  to put NA's at the end of the sort order, but R 2.1.0 checks if
	  characters
	  are in the correct range. Instead, we explicitly force NA's to
	  the end.

2005-04-07  warnes

	* [r606] - Add scat() function which writes its arguments to stderr
	  and
	  flushes so that output is immediately displayed, but only if
	  'getOption("DEBUG")' is true.

2005-04-02  warnes

	* [r600] Move drop.levels() from gtools to gdata.
	* [r599] Minor reordering of functions in file
	* [r598] Move frameApply() to gdata package.
	* [r597] Fix error if only one value passed to mixedorder.
	* [r596] Add proper handling where more than one quantile obtains
	  the same value

2005-04-01  warnes

	* [r595] Add CVS ID tag to file headers.
	* [r594] Fixes from Jim Rogers for R CMD check problems in
	  frameApply

2005-03-31  warnes

	* [r591] Updates to drop.levels() and frameApply() from Jim Rogers
	* [r590] Add ELISA data set used by frameApply and drop.levels
	  examples

2005-02-25  warnes

	* [r562] Replace 'T' with TRUE.
	* [r561] Remove dependency on ELISA data set for the example.
	* [r558] Add drop.levels, frameApply to namespace export.

2005-02-15  warnes

	* [r542] Add frameApply and drop.levels contributed by Jim Rogers.

2005-01-12  warnes

	* [r515] Add dependency on R 1.9.0+ to prevent poeple from
	  installing on old
	  versions of R which don't support namespaces.

2004-09-27  warneg

	* [r461] Updated to pass R CMD check.

2004-09-03  warneg

	* [r446] initial bundle checkin

2004-09-02  warneg

	* [r442] Initial revision

2004-08-27  warnes

	* [r441] Fixed bug in mixedsort, and modified reorder.factor to use
	  mixedsort.

2004-08-26  warnes

	* [r440] - Fix bug pointed out by Jim Rogers.
	  - Use a more distictive internal separator: $@$ instead of just $
	  - Capitalization is now irrelevent for search order (unlike
	  ASCII).

2004-06-08  warnes

	* [r372] Nitin Jain added by= parameter to allow specifying
	  separation between groups.

2004-05-26  warnes

	* [r345] Escape underscores in email addresses so Latex is happy.
	* [r343] Replace 'T' with 'TRUE' to pass R CMD check.

2004-05-25  warnes

	* [r334] Remove extraneous comments.
	* [r333] Fix an error in the code when using repeats.allow=T and
	  r>2. Bug
	  report and fix both due to Elizabeth Purdom
	  <epurdom@stanford.edu>.

2004-05-24  warnes

	* [r323] Check if argument is a vector before doing is.na to avoid
	  generating a warning.
	* [r322] Add invalid() function for testing if a parameter value is
	  non-missing, non-NA,
	  non-NULL.

2004-04-27  warnes

	* [r321] Replaced argument `as.list' with `simplify'. Updated
	  documentation,
	  and updated examples appropriately.

2004-04-26  warnes

	* [r320] Added as.list argument to return one list element per
	  evaluation.

2004-03-26  warnes

	* [r303] Uncomment and fix large 'n' example.
	* [r301] - Update to match changes in running()
	  - Add examples to illustrate new arguments.
	  - Modify running correlation plot example to be more clear.
	* [r299] More of the same.
	* [r297] Fix bug discovered by Sean Davis <sdavis2@mail.nih.gov>.
	  The running
	  function took an improper shortcut. When allow.fewer=FALSE it was
	  still passing shorter lists of elements to the called function,
	  and
	  then overwriting the results for the shorter lists with NAs. The
	  code
	  now skips evaluation of the function on lists shorter than the
	  specified length when allow.fewer=FALSE.

2004-01-21  warnes

	* [r277] - Mark sprint() as depreciated.
	  - Replace references to sprint with capture.output()
	  - Use match.arg for halign and valign arguments to
	  textplot.default.
	  - Fix textplot.character so that a vector of characters is
	  properly
	  displayed. Previouslt, character vectors were plotted on top of
	  each
	  other.

2003-12-03  warnes

	* [r253] - match function argument defaults with 'usage'

2003-11-21  warnes

	* [r237] Removed 'deqn' call that was confusing things.
	* [r234] Add email address to author field
	* [r233] - new files
	* [r232] - Change 'T' to 'TRUE' in mixedsort.R
	  - Add missing brace in mixedsort.Rd

2003-11-20  warnes

	* [r230] - Move 'odd' and 'even' functions to a separate file &
	  provide documentation

2003-11-18  warnes

	* [r227] - Renamed smartsort to mixedsort and added documentation.

2003-11-10  warnes

	* [r220] - Add files contributed by Arni Magnusson
	  <arnima@u.washington.edu>. As well as some of my own.

2003-05-23  warnes

	* [r196] - library() backported from 1.7-devel. This version of the
	  function
	  adds the "pos=" argument to specify where in the search path the
	  library should be placed.
	  
	  - updated .First.lib to use library(...pos=3) for MASS to avoid
	  the
	  'genotype' data set in MASS from masking the genotype funciton in
	  genetics when it loads gregmisc
	  
	  - Added logit() inv.logit() matchcols() function and
	  corresponding docs

2003-04-22  warnes

	* [r189] - Fixed tpyo in example that allowed combinations(500,2)
	  to run when
	  it should have been ignred for testing..

2003-04-10  warnes

	* [r186] - Added note about the need to increase
	  options("expressions") to use
	  large values for 'n'. Prompted by bug report from Huan Huang
	  <huan.huang@bnpparibas.com

2003-04-04  warnes

	* [r183] - Replace 'T' with 'TRUE'
	* [r182] - Change occurences of 'T' to 'TRUE'
	* [r181] - Allow optional arguments to sprint to be passed to print
	  - Fix R CMD check errors
	* [r180] - Allow optional arguments to sprint to be passed to print

2003-04-03  warnes

	* [r177] - Had mistyped 'sprint' as 'sprintf'.
	* [r176] - Add help file for capture and sprintf.

2003-04-02  warnes

	* [r174] - Added file 'capture.R' containing capture() and
	  sprint().

2003-03-07  warnes

	* [r168] - Minor changes to code to allow the package to be
	  provided as an
	  S-Plus chapter.

2003-01-30  warnes

	* [r161] - Fixed typo in email address.

2003-01-02  warnes

	* [r148] - Add nlevels function.

2002-10-11  warnes

	* [r133] - Add permute() function (wraper for sample) and man page
	* [r132] - Escaped underscores in my email address that was causing
	  a parse
	  error in the {r,p}dirichlet man page.

2002-09-30  warnes

	* [r128] - Added rdirichlet() and ddirichlet() with accompaning
	  help page and tests.

2002-09-24  warnes

	* [r122] - Fixed error where running was always calling running2
	  with
	  'fun=mean', ignoring the specified funtion.

2002-09-23  warnes

	* [r117] - Modified all files to include CVS Id and Log tags.
	* [r116] - Added CrossTable() and barplot2() code and docs
	  contributed by Marc Schwartz.
	  - Permit combinations() to be used when r>n provided
	  repeat.allowed=TRUE
	  - Bumped up version number

2002-08-01  warnes

	* [r114] - Corrected documentation mismatch for ci, ci.default.
	  
	  - Replaced all occurences of '_' for assignment with '<-'.
	  
	  - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
	  with
	  the spelled out version.
	  
	  - Updaded version number and date.

2002-04-09  warneg

	* [r109] Checkin for version 0.5.3

2002-03-26  warneg

	* [r97] Initial Checkin
	* [r96] Initial checkin.

2002-03-20  warneg

	* [r91] - Added definition of is.R function.
	  
	  - Added boxplot.formula

2002-03-07  warneg

	* [r90] - Added documentation and example for running2
	* [r89] - Added "running2", which handles both univariate and
	  bivariate cases
	  - Modified "running" to call "running2"

2002-02-05  warneg

	* [r75] - Fix typo that caused code meant to run only under S-Plus
	  to run
	  under R, causing problems.

2001-12-19  warneg

	* [r67] - Added code for %in%.

2001-09-18  warneg

	* [r18] Release 0.3.2

2001-09-01  warneg

	* [r17] Initial checkin.
	* [r16] Release 0.3.0

2001-08-25  warneg

	* [r13] Initial CVS checkin.
	* [r11] Fixed a typo and a syntax error.
	* [r7] Initial Checkin

2001-06-29  warneg

	* [r6] Initial revision.