File: multiple_recombinations.aln.vcf

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##fileformat=VCFv4.2
##contig=<ID=1,length=242>
##FORMAT=<ID=AB,Number=1,Type=String,Description="Alt Base">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	sequence_1	sequence_2	sequence_3	sequence_4	sequence_5	sequence_6	sequence_7	sequence_8	sequence_9	sequence_10
1	1	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	2	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	3	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	4	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	5	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	6	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	7	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	8	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	9	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	10	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	11	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	12	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	13	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	14	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	15	.	A	-	.	.	.	AB	A	A	A	A	A	A	A	A	-	-
1	16	.	A	G	.	.	.	AB	A	A	A	A	G	G	G	G	G	G
1	22	.	A	C	.	.	.	AB	A	C	C	C	A	A	A	A	A	A
1	24	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	A
1	28	.	A	C	.	.	.	AB	A	A	A	A	A	C	C	C	A	A
1	29	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	30	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	31	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	32	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	33	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	34	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	35	.	A	T,G	.	.	.	AB	A	A	T	T	A	A	G	G	G	G
1	36	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	37	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	38	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	39	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	40	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	41	.	A	G	.	.	.	AB	A	A	A	G	A	A	G	G	G	G
1	42	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	43	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	44	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	45	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	46	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	47	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	48	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	49	.	A	G	.	.	.	AB	A	A	A	A	A	A	G	G	G	G
1	51	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	53	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	54	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	55	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	56	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	57	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	58	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	59	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	60	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	61	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	62	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	63	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	64	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	65	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	66	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	67	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	69	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	70	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	71	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	73	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	74	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	75	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	76	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	77	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	78	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	79	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	80	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	81	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	82	.	A	C	.	.	.	AB	A	C	C	C	C	A	A	A	A	A
1	84	.	A	C,T	.	.	.	AB	A	C	C	C	C	A	A	A	A	T
1	85	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	86	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	87	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	88	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	89	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	90	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	91	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	92	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	93	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	94	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	95	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	96	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	97	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	98	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	99	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	100	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	101	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	102	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	103	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	104	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	105	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	106	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	107	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	108	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	109	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	110	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	111	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	112	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	113	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	114	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	115	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	116	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	117	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	118	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	119	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	120	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	121	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	122	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	123	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	124	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	125	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	126	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	127	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	128	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	129	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	130	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	131	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	132	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	133	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	134	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	135	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	136	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	137	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	138	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	139	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	140	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	141	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	142	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	143	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	144	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	145	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	146	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	147	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	148	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	149	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	150	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	151	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	152	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	153	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	154	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	155	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	156	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	157	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	158	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	159	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	160	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	161	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	162	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	163	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	164	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	165	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	166	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	167	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	168	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	169	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	170	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	171	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	172	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	173	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	174	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	175	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	176	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	177	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	178	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	179	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	180	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	181	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	182	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	183	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	184	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	185	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	186	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	187	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	188	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	189	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	190	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	191	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	192	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	193	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	194	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	195	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	196	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	197	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	198	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	199	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	200	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	201	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	202	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	203	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	204	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	205	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	206	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	207	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	208	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	209	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	210	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	211	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	212	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	213	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	214	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	215	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	216	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	217	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	218	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	219	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	220	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	221	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	222	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	223	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	224	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	225	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	226	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	227	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	228	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	229	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	230	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	231	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	232	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	233	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	234	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	235	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	236	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	237	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	238	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	239	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	240	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	241	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T
1	242	.	A	T	.	.	.	AB	A	A	A	A	A	A	A	A	A	T