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|
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
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<title>correct: Gwyddion Data Processing Library Reference Manual</title>
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<a name="libgwyprocess-correct"></a><div class="titlepage"></div>
<div class="refnamediv"><table width="100%"><tr>
<td valign="top">
<h2><span class="refentrytitle"><a name="libgwyprocess-correct.top_of_page"></a>correct</span></h2>
<p>correct — Data correction</p>
</td>
<td class="gallery_image" valign="top" align="right"></td>
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<div class="refsect1">
<a name="libgwyprocess-correct.functions"></a><h2>Functions</h2>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="functions_return">
<col class="functions_name">
</colgroup>
<tbody>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<span class="c_punctuation">(</span><a class="link" href="libgwyprocess-correct.html#GwyCoordTransform2DFunc" title="GwyCoordTransform2DFunc ()">*GwyCoordTransform2DFunc</a><span class="c_punctuation">)</span> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-laplace-solve" title="gwy_data_field_laplace_solve ()">gwy_data_field_laplace_solve</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-correct-laplace-iteration" title="gwy_data_field_correct_laplace_iteration ()">gwy_data_field_correct_laplace_iteration</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-correct-average" title="gwy_data_field_correct_average ()">gwy_data_field_correct_average</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-correct-average-unmasked" title="gwy_data_field_correct_average_unmasked ()">gwy_data_field_correct_average_unmasked</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-mask-outliers" title="gwy_data_field_mask_outliers ()">gwy_data_field_mask_outliers</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-mask-outliers2" title="gwy_data_field_mask_outliers2 ()">gwy_data_field_mask_outliers2</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-distort" title="gwy_data_field_distort ()">gwy_data_field_distort</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-sample-distorted" title="gwy_data_field_sample_distorted ()">gwy_data_field_sample_distorted</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-affine" title="gwy_data_field_affine ()">gwy_data_field_affine</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-affine-prepare" title="gwy_data_field_affine_prepare ()">gwy_data_field_affine_prepare</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gboolean"><span class="returnvalue">gboolean</span></a>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-measure-lattice-acf" title="gwy_data_field_measure_lattice_acf ()">gwy_data_field_measure_lattice_acf</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gboolean"><span class="returnvalue">gboolean</span></a>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-measure-lattice-psdf" title="gwy_data_field_measure_lattice_psdf ()">gwy_data_field_measure_lattice_psdf</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gboolean"><span class="returnvalue">gboolean</span></a>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-line-correct-laplace" title="gwy_data_line_correct_laplace ()">gwy_data_line_correct_laplace</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-mark-scars" title="gwy_data_field_mark_scars ()">gwy_data_field_mark_scars</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-subtract-row-shifts" title="gwy_data_field_subtract_row_shifts ()">gwy_data_field_subtract_row_shifts</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<a class="link" href="GwyDataLine.html" title="GwyDataLine"><span class="returnvalue">GwyDataLine</span></a> *
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-find-row-shifts-trimmed-mean" title="gwy_data_field_find_row_shifts_trimmed_mean ()">gwy_data_field_find_row_shifts_trimmed_mean</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<a class="link" href="GwyDataLine.html" title="GwyDataLine"><span class="returnvalue">GwyDataLine</span></a> *
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-find-row-shifts-trimmed-diff" title="gwy_data_field_find_row_shifts_trimmed_diff ()">gwy_data_field_find_row_shifts_trimmed_diff</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<a class="link" href="libgwyprocess-gwyprocessenums.html#GwyPlaneSymmetry" title="enum GwyPlaneSymmetry"><span class="returnvalue">GwyPlaneSymmetry</span></a>
</td>
<td class="function_name">
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-unrotate-find-corrections" title="gwy_data_field_unrotate_find_corrections ()">gwy_data_field_unrotate_find_corrections</a> <span class="c_punctuation">()</span>
</td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect1">
<a name="libgwyprocess-correct.includes"></a><h2>Includes</h2>
<pre class="synopsis">#include <libprocess/gwyprocess.h>
</pre>
</div>
<div class="refsect1">
<a name="libgwyprocess-correct.description"></a><h2>Description</h2>
</div>
<div class="refsect1">
<a name="libgwyprocess-correct.functions_details"></a><h2>Functions</h2>
<div class="refsect2">
<a name="GwyCoordTransform2DFunc"></a><h3>GwyCoordTransform2DFunc ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
<span class="c_punctuation">(</span>*GwyCoordTransform2DFunc<span class="c_punctuation">)</span> (<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> x</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> y</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> *px</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> *py</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gpointer"><span class="type">gpointer</span></a> user_data</code></em>);</pre>
<p>The type of two-dimensional coordinate transform function.</p>
<div class="refsect3">
<a name="GwyCoordTransform2DFunc.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>x</p></td>
<td class="parameter_description"><p>Old x coordinate.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>y</p></td>
<td class="parameter_description"><p>Old y coordinate.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>px</p></td>
<td class="parameter_description"><p>Location to store new x coordinate.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>py</p></td>
<td class="parameter_description"><p>Location to store new y coordinate.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>user_data</p></td>
<td class="parameter_description"><p>User data passed to the caller function.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<p class="since">Since: <a class="link" href="api-index-2-5.html#api-index-2.5">2.5</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-laplace-solve"></a><h3>gwy_data_field_laplace_solve ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_laplace_solve (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *mask</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gint"><span class="type">gint</span></a> grain_id</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> qprec</code></em>);</pre>
<p>Replaces masked areas by the solution of Laplace equation.</p>
<p>The boundary conditions on mask boundaries are Dirichlet with values given
by pixels on the outer boundary of the masked area. Boundary conditions at
field edges are Neumann conditions ∂z/∂n=0 where n denotes the normal to the
edge. If entire area of <em class="parameter"><code>field</code></em>
is to be replaced the problem is
underspecified; <em class="parameter"><code>field</code></em>
will be filled with zeros.</p>
<p>For the default value of <em class="parameter"><code>qprec</code></em>
the the result should be good enough for any
image processing purposes with the typical local error of order 10⁻⁵ for
very large grains and possibly much smaller for small grains. You can lower
<em class="parameter"><code>qprec</code></em>
down to about 0.3 or even 0.2 if speed is crucial and some precision
can be sacrificed. Below that the result just starts becoming somewhat
worse for not much speed increase. Conversely, you may wish to increase
<em class="parameter"><code>qprec</code></em>
up to 3 or even 5 if accuracy is important and you can afford the
increased computation time.</p>
<div class="refsect3">
<a name="gwy-data-field-laplace-solve.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>field</p></td>
<td class="parameter_description"><p>A two-dimensional data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mask</p></td>
<td class="parameter_description"><p>A two-dimensional data field containing mask defining the areas to
interpolate.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>grain_id</p></td>
<td class="parameter_description"><p>The id number of the grain to replace with the solution of
Laplace equation, from 1 to <em class="parameter"><code>ngrains</code></em>
(see
<code class="function">gwy_data_field_grain_numbers()</code>). Passing 0 means to replace the
entire empty space outside grains while passing a negative value
means to replace the entire masked area.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>qprec</p></td>
<td class="parameter_description"><p>Speed-accuracy tuning parameter. Pass 1.0 for the default that is
fast and sufficiently precise.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<p class="since">Since: <a class="link" href="api-index-2-47.html#api-index-2.47">2.47</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-correct-laplace-iteration"></a><h3>gwy_data_field_correct_laplace_iteration ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_correct_laplace_iteration
(<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *data_field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *mask_field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *buffer_field</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> corrfactor</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> *error</code></em>);</pre>
<p>Performs one interation of Laplace data correction.</p>
<p>Tries to remove all the points in mask off the data by using
iterative method similar to solving heat flux equation.</p>
<p>Use this function repeatedly until reasonable <em class="parameter"><code>error</code></em>
is reached.</p>
<div class="warning">For almost all purposes this function was superseded by
non-iteratie <a class="link" href="libgwyprocess-correct.html#gwy-data-field-laplace-solve" title="gwy_data_field_laplace_solve ()"><code class="function">gwy_data_field_laplace_solve()</code></a> which is simultaneously much
faster and more accurate.</div>
<div class="refsect3">
<a name="gwy-data-field-correct-laplace-iteration.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>data_field</p></td>
<td class="parameter_description"><p>Data field to be corrected.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mask_field</p></td>
<td class="parameter_description"><p>Mask of places to be corrected.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>buffer_field</p></td>
<td class="parameter_description"><p>Initialized to same size as mask and data.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>error</p></td>
<td class="parameter_description"><p>Maximum change within last step.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>corrfactor</p></td>
<td class="parameter_description"><p>Correction factor within step.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-correct-average"></a><h3>gwy_data_field_correct_average ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_correct_average (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *data_field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *mask_field</code></em>);</pre>
<p>Fills data under mask with the average value.</p>
<p>This function simply puts average value of all the <em class="parameter"><code>data_field</code></em>
values (both
masked and unmasked) into points in <em class="parameter"><code>data_field</code></em>
lying under points where
<em class="parameter"><code>mask_field</code></em>
values are nonzero.</p>
<p>In most cases you probably want to use
<a class="link" href="libgwyprocess-correct.html#gwy-data-field-correct-average-unmasked" title="gwy_data_field_correct_average_unmasked ()"><code class="function">gwy_data_field_correct_average_unmasked()</code></a> instead.</p>
<div class="refsect3">
<a name="gwy-data-field-correct-average.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>data_field</p></td>
<td class="parameter_description"><p>A data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mask_field</p></td>
<td class="parameter_description"><p>Mask of places to be corrected.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-correct-average-unmasked"></a><h3>gwy_data_field_correct_average_unmasked ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_correct_average_unmasked
(<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *data_field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *mask_field</code></em>);</pre>
<p>Fills data under mask with the average value of unmasked data.</p>
<p>This function calculates the average value of all unmasked pixels in
<em class="parameter"><code>data_field</code></em>
and then fills all the masked pixels with this average value.
It is useful as the first rough step of correction of data under the mask.</p>
<p>If all data are masked the field is filled with zeroes.</p>
<div class="refsect3">
<a name="gwy-data-field-correct-average-unmasked.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>data_field</p></td>
<td class="parameter_description"><p>A data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mask_field</p></td>
<td class="parameter_description"><p>Mask of places to be corrected.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<p class="since">Since: <a class="link" href="api-index-2-44.html#api-index-2.44">2.44</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-mask-outliers"></a><h3>gwy_data_field_mask_outliers ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_mask_outliers (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *data_field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *mask_field</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> thresh</code></em>);</pre>
<p>Creates mask of data that are above or below <em class="parameter"><code>thresh</code></em>
*sigma from average
height.</p>
<p>Sigma denotes root-mean square deviation of heights. This criterium
corresponds to the usual Gaussian distribution outliers detection if
<em class="parameter"><code>thresh</code></em>
is 3.</p>
<div class="refsect3">
<a name="gwy-data-field-mask-outliers.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>data_field</p></td>
<td class="parameter_description"><p>A data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mask_field</p></td>
<td class="parameter_description"><p>A data field to be filled with mask.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>thresh</p></td>
<td class="parameter_description"><p>Threshold value.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-mask-outliers2"></a><h3>gwy_data_field_mask_outliers2 ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_mask_outliers2 (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *data_field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *mask_field</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> thresh_low</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> thresh_high</code></em>);</pre>
<p>Creates mask of data that are above or below multiples of rms from average
height.</p>
<p>Data that are below <em class="parameter"><code>mean</code></em>
-<em class="parameter"><code>thresh_low</code></em>
*<em class="parameter"><code>sigma</code></em>
or above
<em class="parameter"><code>mean</code></em>
+<em class="parameter"><code>thresh_high</code></em>
*<em class="parameter"><code>sigma</code></em>
are marked as outliers, where <em class="parameter"><code>sigma</code></em>
denotes the
root-mean square deviation of heights.</p>
<div class="refsect3">
<a name="gwy-data-field-mask-outliers2.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>data_field</p></td>
<td class="parameter_description"><p>A data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mask_field</p></td>
<td class="parameter_description"><p>A data field to be filled with mask.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>thresh_low</p></td>
<td class="parameter_description"><p>Lower threshold value.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>thresh_high</p></td>
<td class="parameter_description"><p>Upper threshold value.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<p class="since">Since: <a class="link" href="api-index-2-26.html#api-index-2.26">2.26</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-distort"></a><h3>gwy_data_field_distort ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_distort (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *source</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *dest</code></em>,
<em class="parameter"><code><a class="link" href="libgwyprocess-correct.html#GwyCoordTransform2DFunc" title="GwyCoordTransform2DFunc ()"><span class="type">GwyCoordTransform2DFunc</span></a> invtrans</code></em>,
<em class="parameter"><code><a href="http://developer.gnome.org/doc/API/2.0/glib/glib-Basic-Types.html#gpointer"><span class="type">gpointer</span></a> user_data</code></em>,
<em class="parameter"><code><a class="link" href="libgwyprocess-gwyprocessenums.html#GwyInterpolationType" title="enum GwyInterpolationType"><span class="type">GwyInterpolationType</span></a> interp</code></em>,
<em class="parameter"><code><a class="link" href="libgwyprocess-gwyprocessenums.html#GwyExteriorType" title="enum GwyExteriorType"><span class="type">GwyExteriorType</span></a> exterior</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> fill_value</code></em>);</pre>
<p>Distorts a data field in the horizontal plane.</p>
<p>Note the transform function <em class="parameter"><code>invtrans</code></em>
is the inverse transform, in other
words it calculates the old coordinates from the new coordinates (the
transform would not be uniquely defined the other way round).</p>
<p>The <a class="link" href="libgwyprocess-gwyprocessenums.html#GWY-EXTERIOR-LAPLACE:CAPS"><code class="literal">GWY_EXTERIOR_LAPLACE</code></a> exterior type cannot be used with this function.</p>
<div class="refsect3">
<a name="gwy-data-field-distort.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>source</p></td>
<td class="parameter_description"><p>Source data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>dest</p></td>
<td class="parameter_description"><p>Destination data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>invtrans</p></td>
<td class="parameter_description"><p>Inverse transform function, that is the transformation from
new coordinates to old coordinates. It gets
(<em class="parameter"><code>j</code></em>
+0.5, <em class="parameter"><code>i</code></em>
+0.5), where <em class="parameter"><code>i</code></em>
and <em class="parameter"><code>j</code></em>
are the new row and column
indices, passed as the input coordinates. The output coordinates
should follow the same convention. Unless a special exterior
handling is required, the transform function does not need to
concern itself with coordinates being outside of the data.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>user_data</p></td>
<td class="parameter_description"><p>Pointer passed as <em class="parameter"><code>user_data</code></em>
to <em class="parameter"><code>invtrans</code></em>
.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>interp</p></td>
<td class="parameter_description"><p>Interpolation type to use.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>exterior</p></td>
<td class="parameter_description"><p>Exterior pixels handling.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>fill_value</p></td>
<td class="parameter_description"><p>The value to use with <em class="parameter"><code>GWY_EXTERIOR_FIXED_VALUE</code></em>
.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<p class="since">Since: <a class="link" href="api-index-2-5.html#api-index-2.5">2.5</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-sample-distorted"></a><h3>gwy_data_field_sample_distorted ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_sample_distorted (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *source</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *dest</code></em>,
<em class="parameter"><code>const <a href="../libgwyddion-Math.html#GwyXY"><span class="type">GwyXY</span></a> *coords</code></em>,
<em class="parameter"><code><a class="link" href="libgwyprocess-gwyprocessenums.html#GwyInterpolationType" title="enum GwyInterpolationType"><span class="type">GwyInterpolationType</span></a> interp</code></em>,
<em class="parameter"><code><a class="link" href="libgwyprocess-gwyprocessenums.html#GwyExteriorType" title="enum GwyExteriorType"><span class="type">GwyExteriorType</span></a> exterior</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> fill_value</code></em>);</pre>
<p>Resamples a data field in an arbitrarily distorted manner.</p>
<p>Each item in <em class="parameter"><code>coords</code></em>
corresponds to one pixel in <em class="parameter"><code>dest</code></em>
and gives the
coordinates in <em class="parameter"><code>source</code></em>
defining the value to set in this pixel.</p>
<p>The <a class="link" href="libgwyprocess-gwyprocessenums.html#GWY-EXTERIOR-LAPLACE:CAPS"><code class="literal">GWY_EXTERIOR_LAPLACE</code></a> exterior type cannot be used with this function.</p>
<div class="refsect3">
<a name="gwy-data-field-sample-distorted.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>source</p></td>
<td class="parameter_description"><p>Source data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>dest</p></td>
<td class="parameter_description"><p>Destination data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>coords</p></td>
<td class="parameter_description"><p>Array of <em class="parameter"><code>source</code></em>
coordinates with the same number of items as
<em class="parameter"><code>dest</code></em>
, ordered as data field data.
See <a class="link" href="libgwyprocess-correct.html#gwy-data-field-distort" title="gwy_data_field_distort ()"><code class="function">gwy_data_field_distort()</code></a> for coordinate convention discussion.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>interp</p></td>
<td class="parameter_description"><p>Interpolation type to use.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>exterior</p></td>
<td class="parameter_description"><p>Exterior pixels handling.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>fill_value</p></td>
<td class="parameter_description"><p>The value to use with <em class="parameter"><code>GWY_EXTERIOR_FIXED_VALUE</code></em>
.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<p class="since">Since: <a class="link" href="api-index-2-45.html#api-index-2.45">2.45</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-affine"></a><h3>gwy_data_field_affine ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_affine (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *source</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *dest</code></em>,
<em class="parameter"><code>const <a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> *invtrans</code></em>,
<em class="parameter"><code><a class="link" href="libgwyprocess-gwyprocessenums.html#GwyInterpolationType" title="enum GwyInterpolationType"><span class="type">GwyInterpolationType</span></a> interp</code></em>,
<em class="parameter"><code><a class="link" href="libgwyprocess-gwyprocessenums.html#GwyExteriorType" title="enum GwyExteriorType"><span class="type">GwyExteriorType</span></a> exterior</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> fill_value</code></em>);</pre>
<p>Performs an affine transformation of a data field in the horizontal plane.</p>
<p>Note the transform <em class="parameter"><code>invtrans</code></em>
is the inverse transform, in other
words it calculates the old coordinates from the new coordinates. This
way even degenerate (non-invertible) transforms can be meaningfully used.
Also note that the (column, row) coordinate system is left-handed.</p>
<p>The <a class="link" href="libgwyprocess-gwyprocessenums.html#GWY-EXTERIOR-LAPLACE:CAPS"><code class="literal">GWY_EXTERIOR_LAPLACE</code></a> exterior type cannot be used with this function.</p>
<div class="refsect3">
<a name="gwy-data-field-affine.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>source</p></td>
<td class="parameter_description"><p>Source data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>dest</p></td>
<td class="parameter_description"><p>Destination data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>invtrans</p></td>
<td class="parameter_description"><p>Inverse transform, that is the transformation from
new pixel coordinates to old pixel coordinates, represented as
(<em class="parameter"><code>j</code></em>
+0.5, <em class="parameter"><code>i</code></em>
+0.5), where <em class="parameter"><code>i</code></em>
and <em class="parameter"><code>j</code></em>
are the row and column
indices. It is represented as a six-element array [<em class="parameter"><code>axx</code></em>
, <em class="parameter"><code>axy</code></em>
,
<em class="parameter"><code>ayx</code></em>
, <em class="parameter"><code>ayy</code></em>
, <em class="parameter"><code>bx</code></em>
, <em class="parameter"><code>by</code></em>
] where <em class="parameter"><code>axy</code></em>
is the coefficient from <em class="parameter"><code>x</code></em>
to
<em class="parameter"><code>y</code></em>
.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>interp</p></td>
<td class="parameter_description"><p>Interpolation type to use.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>exterior</p></td>
<td class="parameter_description"><p>Exterior pixels handling.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>fill_value</p></td>
<td class="parameter_description"><p>The value to use with <em class="parameter"><code>GWY_EXTERIOR_FIXED_VALUE</code></em>
.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<p class="since">Since: <a class="link" href="api-index-2-34.html#api-index-2.34">2.34</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-affine-prepare"></a><h3>gwy_data_field_affine_prepare ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_affine_prepare (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *source</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *dest</code></em>,
<em class="parameter"><code>const <a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> *a1a2</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> *a1a2_corr</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> *invtrans</code></em>,
<em class="parameter"><code><a class="link" href="libgwyprocess-gwyprocessenums.html#GwyAffineScalingType" title="enum GwyAffineScalingType"><span class="type">GwyAffineScalingType</span></a> scaling</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gboolean"><span class="type">gboolean</span></a> prevent_rotation</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> oversampling</code></em>);</pre>
<p>Resolves an affine transformation of a data field in the horizontal plane.</p>
<p>This function calculates suitable arguments for <a class="link" href="libgwyprocess-correct.html#gwy-data-field-affine" title="gwy_data_field_affine ()"><code class="function">gwy_data_field_affine()</code></a>
from given images and lattice vectors (in real coordinates).</p>
<p>Data field <em class="parameter"><code>dest</code></em>
will be resized and its real dimensions and units set in
anticipation of <a class="link" href="libgwyprocess-correct.html#gwy-data-field-affine" title="gwy_data_field_affine ()"><code class="function">gwy_data_field_affine()</code></a>. Its contents will be destroyed.</p>
<p>Note that <em class="parameter"><code>a1a2_corr</code></em>
is an input-output parameter. In general, the vectors
will be modified according to <em class="parameter"><code>scaling</code></em>
and <em class="parameter"><code>prevent_rotation</code></em>
to the actual
vectors in <em class="parameter"><code>dest</code></em>
after the transformation. Only if <em class="parameter"><code>prevent_rotation</code></em>
is
<a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#FALSE:CAPS"><code class="literal">FALSE</code></a> and <em class="parameter"><code>scaling</code></em>
is <a class="link" href="libgwyprocess-gwyprocessenums.html#GWY-AFFINE-SCALING-AS-GIVEN:CAPS"><code class="literal">GWY_AFFINE_SCALING_AS_GIVEN</code></a> the vectors are
preserved.</p>
<div class="refsect3">
<a name="gwy-data-field-affine-prepare.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>source</p></td>
<td class="parameter_description"><p>Source data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>dest</p></td>
<td class="parameter_description"><p>Destination data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>a1a2</p></td>
<td class="parameter_description"><p>Lattice vectors (or generally base vectors) in <em class="parameter"><code>source</code></em>
, as an array
of four components: <em class="parameter"><code>x1</code></em>
, <em class="parameter"><code>y1</code></em>
, <em class="parameter"><code>x2</code></em>
and <em class="parameter"><code>y2</code></em>
.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>a1a2_corr</p></td>
<td class="parameter_description"><p>Correct lattice vectors (or generally base vectors) <em class="parameter"><code>dest</code></em>
should
have after the affine transform, in the same form as <em class="parameter"><code>a1a2</code></em>
.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>invtrans</p></td>
<td class="parameter_description"><p>Inverse transform as an array of six values to be filled
according to <a class="link" href="libgwyprocess-correct.html#gwy-data-field-affine" title="gwy_data_field_affine ()"><code class="function">gwy_data_field_affine()</code></a> specification.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>scaling</p></td>
<td class="parameter_description"><p>How (or if) to scale the correct lattice vectors.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>prevent_rotation</p></td>
<td class="parameter_description"><p><a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#TRUE:CAPS"><code class="literal">TRUE</code></a> to prevent rotation of the data by rotating
<em class="parameter"><code>a1a2_corr</code></em>
as a whole to a direction preserving the
data orientation. <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#FALSE:CAPS"><code class="literal">FALSE</code></a> to take <em class="parameter"><code>a1a2_corr</code></em>
as given.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>oversampling</p></td>
<td class="parameter_description"><p>Oversampling factor. Values larger than 1 mean smaller
pixels (and more of them) in <em class="parameter"><code>dest</code></em>
, values smaller than 1
the opposite. Pass 1.0 for the default pixel size choice.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<p class="since">Since: <a class="link" href="api-index-2-49.html#api-index-2.49">2.49</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-measure-lattice-acf"></a><h3>gwy_data_field_measure_lattice_acf ()</h3>
<pre class="programlisting"><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gboolean"><span class="returnvalue">gboolean</span></a>
gwy_data_field_measure_lattice_acf (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *acf2d</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> *a1a2</code></em>);</pre>
<p>Estimates or improves estimate of lattice vectors from a 2D ACF field.</p>
<p>Note that the 2D ACF of a data field has to be passed, not the data field
itself. The correlation function can be for instance calculated by
<a class="link" href="libgwyprocess-stats.html#gwy-data-field-2dacf" title="gwy_data_field_2dacf ()"><code class="function">gwy_data_field_2dacf()</code></a>. However, you can calculate and/or process the
correlation function in any way you see fit.</p>
<p>When the vectors in <em class="parameter"><code>a1a2</code></em>
are zero the function attempts to estimate the
lattice from scratch. But if <em class="parameter"><code>a1a2</code></em>
contains two non-zero vectors it takes
them as approximate lattice vectors to improve.</p>
<p>If the function return <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#FALSE:CAPS"><code class="literal">FALSE</code></a> the array <em class="parameter"><code>a1a2</code></em>
is filled with useless values
and must be ignored.</p>
<div class="refsect3">
<a name="gwy-data-field-measure-lattice-acf.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>acf2d</p></td>
<td class="parameter_description"><p>Data field containing two-dimensional autocorrelation function.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>a1a2</p></td>
<td class="parameter_description"><p>Lattice vectors as an array of four components: <em class="parameter"><code>x1</code></em>
, <em class="parameter"><code>y1</code></em>
, <em class="parameter"><code>x2</code></em>
and
<em class="parameter"><code>y2</code></em>
(in real coordinates).</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect3">
<a name="gwy-data-field-measure-lattice-acf.returns"></a><h4>Returns</h4>
<p> <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#TRUE:CAPS"><code class="literal">TRUE</code></a> if good lattice vectors were found, <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#FALSE:CAPS"><code class="literal">FALSE</code></a> on failure.</p>
</div>
<p class="since">Since: <a class="link" href="api-index-2-49.html#api-index-2.49">2.49</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-measure-lattice-psdf"></a><h3>gwy_data_field_measure_lattice_psdf ()</h3>
<pre class="programlisting"><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gboolean"><span class="returnvalue">gboolean</span></a>
gwy_data_field_measure_lattice_psdf (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *psdf2d</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> *a1a2</code></em>);</pre>
<p>Estimates or improves estimate of lattice vectors from a 2D PSDF field.</p>
<p>Note that the 2D PSDF of a data field has to be passed, not the data field
itself. The spectral density can be for instance calculated by
<a class="link" href="libgwyprocess-inttrans.html#gwy-data-field-2dfft" title="gwy_data_field_2dfft ()"><code class="function">gwy_data_field_2dfft()</code></a> and summing the squares of real and imaginary parts
However, you can calculate and/or process the spectral density in any way
you see fit.</p>
<p>When the vectors in <em class="parameter"><code>a1a2</code></em>
are zero the function attempts to estimate the
lattice from scratch. But if <em class="parameter"><code>a1a2</code></em>
contains two non-zero vectors it takes
them as approximate lattice vectors to improve.</p>
<p>If the function return <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#FALSE:CAPS"><code class="literal">FALSE</code></a> the array <em class="parameter"><code>a1a2</code></em>
is filled with useless values
and must be ignored.</p>
<div class="refsect3">
<a name="gwy-data-field-measure-lattice-psdf.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>psdf2d</p></td>
<td class="parameter_description"><p>Data field containing two-dimensional power spectrum density
function (or alternatively Fourier coefficient modulus).</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>a1a2</p></td>
<td class="parameter_description"><p>Lattice vectors as an array of four components: <em class="parameter"><code>x1</code></em>
, <em class="parameter"><code>y1</code></em>
, <em class="parameter"><code>x2</code></em>
and
<em class="parameter"><code>y2</code></em>
(in real coordinates).</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect3">
<a name="gwy-data-field-measure-lattice-psdf.returns"></a><h4>Returns</h4>
<p> <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#TRUE:CAPS"><code class="literal">TRUE</code></a> if good lattice vectors were found, <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#FALSE:CAPS"><code class="literal">FALSE</code></a> on failure.</p>
</div>
<p class="since">Since: <a class="link" href="api-index-2-49.html#api-index-2.49">2.49</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-line-correct-laplace"></a><h3>gwy_data_line_correct_laplace ()</h3>
<pre class="programlisting"><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gboolean"><span class="returnvalue">gboolean</span></a>
gwy_data_line_correct_laplace (<em class="parameter"><code><a class="link" href="GwyDataLine.html" title="GwyDataLine"><span class="type">GwyDataLine</span></a> *data_line</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataLine.html" title="GwyDataLine"><span class="type">GwyDataLine</span></a> *mask_line</code></em>);</pre>
<p>Fills missing values in a data line using Laplace data correction.</p>
<p>Both data lines must have the same number of values.</p>
<p>For one-dimensional data the missing data interpolation is explicit.
Interior missing segments are filled with linear dependence between the edge
points. Missing segments with one end open are filled with the edge value.</p>
<div class="refsect3">
<a name="gwy-data-line-correct-laplace.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>data_line</p></td>
<td class="parameter_description"><p>A data line.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mask_line</p></td>
<td class="parameter_description"><p>Mask of places to be corrected.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect3">
<a name="gwy-data-line-correct-laplace.returns"></a><h4>Returns</h4>
<p> <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#TRUE:CAPS"><code class="literal">TRUE</code></a> if the line contained any data at all. If there are no data
the <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#FALSE:CAPS"><code class="literal">FALSE</code></a> is returned and <em class="parameter"><code>data_line</code></em>
is filled with zeros.</p>
</div>
<p class="since">Since: <a class="link" href="api-index-2-45.html#api-index-2.45">2.45</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-mark-scars"></a><h3>gwy_data_field_mark_scars ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_mark_scars (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *data_field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *result</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> threshold_high</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> threshold_low</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> min_scar_len</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> max_scar_width</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gboolean"><span class="type">gboolean</span></a> negative</code></em>);</pre>
<p>Find and marks scars in a data field.</p>
<p>Scars are linear horizontal defects, consisting of shifted values.
Zero or negative values in <em class="parameter"><code>result</code></em>
siginify normal data, positive
values siginify samples that are part of a scar.</p>
<div class="refsect3">
<a name="gwy-data-field-mark-scars.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>data_field</p></td>
<td class="parameter_description"><p>A data field to find scars in.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>result</p></td>
<td class="parameter_description"><p>A data field to store the result to (it is resized to match
<em class="parameter"><code>data_field</code></em>
).</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>threshold_high</p></td>
<td class="parameter_description"><p>Miminum relative step for scar marking, must be positive.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>threshold_low</p></td>
<td class="parameter_description"><p>Definite relative step for scar marking, must be at least
equal to <em class="parameter"><code>threshold_high</code></em>
.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>min_scar_len</p></td>
<td class="parameter_description"><p>Minimum length of a scar, shorter ones are discarded
(must be at least one).</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>max_scar_width</p></td>
<td class="parameter_description"><p>Maximum width of a scar, must be at least one.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>negative</p></td>
<td class="parameter_description"><p><a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#TRUE:CAPS"><code class="literal">TRUE</code></a> to detect negative scars, <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#FALSE:CAPS"><code class="literal">FALSE</code></a> to positive.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<p class="since">Since: <a class="link" href="api-index-2-46.html#api-index-2.46">2.46</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-subtract-row-shifts"></a><h3>gwy_data_field_subtract_row_shifts ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
gwy_data_field_subtract_row_shifts (<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *data_field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataLine.html" title="GwyDataLine"><span class="type">GwyDataLine</span></a> *shifts</code></em>);</pre>
<p>Shifts entire data field rows as specified by given data line.</p>
<p>Data line <em class="parameter"><code>shifts</code></em>
must have resolution corresponding to the number of
<em class="parameter"><code>data_field</code></em>
rows. Its values are subtracted from individual field rows.</p>
<div class="refsect3">
<a name="gwy-data-field-subtract-row-shifts.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>data_field</p></td>
<td class="parameter_description"><p>A data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>shifts</p></td>
<td class="parameter_description"><p>Data line containing the row shifts.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<p class="since">Since: <a class="link" href="api-index-2-52.html#api-index-2.52">2.52</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-find-row-shifts-trimmed-mean"></a><h3>gwy_data_field_find_row_shifts_trimmed_mean ()</h3>
<pre class="programlisting"><a class="link" href="GwyDataLine.html" title="GwyDataLine"><span class="returnvalue">GwyDataLine</span></a> *
gwy_data_field_find_row_shifts_trimmed_mean
(<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *data_field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *mask</code></em>,
<em class="parameter"><code><a class="link" href="libgwyprocess-gwyprocessenums.html#GwyMaskingType" title="enum GwyMaskingType"><span class="type">GwyMaskingType</span></a> masking</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> trimfrac</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gint"><span class="type">gint</span></a> mincount</code></em>);</pre>
<p>Finds row shifts to misaligned row correction using trimmed row means.</p>
<p>For zero <em class="parameter"><code>trimfrac</code></em>
the function calculates row means. For <em class="parameter"><code>trimfrac</code></em>
of 1/2
or larger it calculates row medians. Values between correspond to trimmed
means.</p>
<div class="refsect3">
<a name="gwy-data-field-find-row-shifts-trimmed-mean.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>data_field</p></td>
<td class="parameter_description"><p>A data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mask</p></td>
<td class="parameter_description"><p>Mask of values to take values into account/exclude, or <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#NULL:CAPS"><code class="literal">NULL</code></a> for full
<em class="parameter"><code>data_field</code></em>
.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>masking</p></td>
<td class="parameter_description"><p>Masking mode to use. See the introduction for description of
masking modes.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>trimfrac</p></td>
<td class="parameter_description"><p>Fraction of lowest values and highest values to discard when
trimming.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mincount</p></td>
<td class="parameter_description"><p>Minimum number of values in a row necessary for per-row
calculation. Rows which are essentially completely masked are
not shifted with respect to a global value. Pass a non-positive
number to use an automatic minimum count.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect3">
<a name="gwy-data-field-find-row-shifts-trimmed-mean.returns"></a><h4>Returns</h4>
<p> A newly created data line containing the row shifts, for instance
row means, medians or trimmed means.</p>
</div>
<p class="since">Since: <a class="link" href="api-index-2-52.html#api-index-2.52">2.52</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-find-row-shifts-trimmed-diff"></a><h3>gwy_data_field_find_row_shifts_trimmed_diff ()</h3>
<pre class="programlisting"><a class="link" href="GwyDataLine.html" title="GwyDataLine"><span class="returnvalue">GwyDataLine</span></a> *
gwy_data_field_find_row_shifts_trimmed_diff
(<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *data_field</code></em>,
<em class="parameter"><code><a class="link" href="GwyDataField.html" title="GwyDataField"><span class="type">GwyDataField</span></a> *mask</code></em>,
<em class="parameter"><code><a class="link" href="libgwyprocess-gwyprocessenums.html#GwyMaskingType" title="enum GwyMaskingType"><span class="type">GwyMaskingType</span></a> masking</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> trimfrac</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gint"><span class="type">gint</span></a> mincount</code></em>);</pre>
<p>Finds row shifts to misaligned row correction using trimmed means of row
differences.</p>
<p>For zero <em class="parameter"><code>trimfrac</code></em>
the function calculates row means. For <em class="parameter"><code>trimfrac</code></em>
of 1/2
or larger it calculates row medians. Values between correspond to trimmed
means.</p>
<div class="refsect3">
<a name="gwy-data-field-find-row-shifts-trimmed-diff.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>data_field</p></td>
<td class="parameter_description"><p>A data field.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mask</p></td>
<td class="parameter_description"><p>Mask of values to take values into account/exclude, or <a href="/usr/share/gtk-doc/html/glib/glib-Standard-Macros.html#NULL:CAPS"><code class="literal">NULL</code></a> for full
<em class="parameter"><code>data_field</code></em>
.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>masking</p></td>
<td class="parameter_description"><p>Masking mode to use. See the introduction for description of
masking modes.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>trimfrac</p></td>
<td class="parameter_description"><p>Fraction of lowest values and highest values to discard when
trimming.</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>mincount</p></td>
<td class="parameter_description"><p>Minimum number of values in a row necessary for per-row
calculation. Rows which are essentially completely masked are
not shifted with respect to a global value. Pass a non-positive
number to use an automatic minimum count.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect3">
<a name="gwy-data-field-find-row-shifts-trimmed-diff.returns"></a><h4>Returns</h4>
<p> A newly created data line containing the row shifts, for instance
row means, medians or trimmed means.</p>
</div>
<p class="since">Since: <a class="link" href="api-index-2-52.html#api-index-2.52">2.52</a></p>
</div>
<hr>
<div class="refsect2">
<a name="gwy-data-field-unrotate-find-corrections"></a><h3>gwy_data_field_unrotate_find_corrections ()</h3>
<pre class="programlisting"><a class="link" href="libgwyprocess-gwyprocessenums.html#GwyPlaneSymmetry" title="enum GwyPlaneSymmetry"><span class="returnvalue">GwyPlaneSymmetry</span></a>
gwy_data_field_unrotate_find_corrections
(<em class="parameter"><code><a class="link" href="GwyDataLine.html" title="GwyDataLine"><span class="type">GwyDataLine</span></a> *derdist</code></em>,
<em class="parameter"><code><a href="/usr/share/gtk-doc/html/glib/glib-Basic-Types.html#gdouble"><span class="type">gdouble</span></a> *correction</code></em>);</pre>
<p>Finds rotation corrections.</p>
<p>Rotation correction is computed for for all symmetry types.
In addition an estimate is made about the prevalent one.</p>
<div class="refsect3">
<a name="gwy-data-field-unrotate-find-corrections.parameters"></a><h4>Parameters</h4>
<div class="informaltable"><table class="informaltable" width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>derdist</p></td>
<td class="parameter_description"><p>Angular derivation distribution (normally obrained from
<a class="link" href="libgwyprocess-stats.html#gwy-data-field-slope-distribution" title="gwy_data_field_slope_distribution ()"><code class="function">gwy_data_field_slope_distribution()</code></a>).</p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>correction</p></td>
<td class="parameter_description"><p>Corrections for particular symmetry types will be stored
here (indexed by GwyPlaneSymmetry). <em class="parameter"><code>correction</code></em>
[0] contains
the most probable correction. All angles are in radians.</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect3">
<a name="gwy-data-field-unrotate-find-corrections.returns"></a><h4>Returns</h4>
<p> The estimate type of prevalent symmetry.</p>
</div>
</div>
</div>
<div class="refsect1">
<a name="libgwyprocess-correct.other_details"></a><h2>Types and Values</h2>
</div>
</div>
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