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/*
* $Id: anfatec.c 24775 2022-04-26 15:03:27Z yeti-dn $
* Copyright (C) 2010-2022 David Necas (Yeti)
* E-mail: yeti@gwyddion.net
*
* This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public
* License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any
* later version.
*
* This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied
* warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
* details.
*
* You should have received a copy of the GNU General Public License along with this program; if not, write to the
* Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
*/
/**
* [FILE-MAGIC-FREEDESKTOP]
* <mime-type type="application/x-anfatec-spm">
* <comment>Anfatec SPM data parameters</comment>
* <magic priority="80">
* <match type="string" offset="0:160" value=";ANFATEC Parameterfile"/>
* </magic>
* </mime-type>
**/
/**
* [FILE-MAGIC-FILEMAGIC]
* # Anfatec SPM data parameters (normally accompained with an unidentifiable
* # INT data file).
* 0 search/160 ;ANFATEC\ Parameterfile\x0d\x0a Anfatec SPM parameters text
* >&0 search/8 Version\x20:\x20
* >>&0 regex [0-9.]+ version %s
**/
/**
* [FILE-MAGIC-USERGUIDE]
* Anfatec
* .par, .int
* Read
**/
#include "config.h"
#include <stdlib.h>
#include <string.h>
#include <libgwyddion/gwymacros.h>
#include <libgwyddion/gwymath.h>
#include <libgwymodule/gwymodule-file.h>
#include <libprocess/datafield.h>
#include <libprocess/spectra.h>
#include <app/gwymoduleutils-file.h>
#include <app/data-browser.h>
#include "err.h"
#define MAGIC ";ANFATEC Parameterfile"
#define MAGIC_SIZE (sizeof(MAGIC)-1)
#define EXTENSION_HEADER ".txt"
#define EXTENSION_DATA ".int"
typedef struct {
gint nabscissae;
gchar **absnames;
gchar **absunits;
gdouble *absdata;
gboolean *is_changing;
GwyBrick *brick;
} AnfatecFVMatrix;
static gboolean module_register (void);
static gint anfatec_detect (const GwyFileDetectInfo *fileinfo,
gboolean only_name);
static gchar* anfatec_find_parameterfile(const gchar *filename);
static GwyContainer* anfatec_load (const gchar *filename,
GwyRunType mode,
GError **error);
static GwyDataField* anfatec_load_image (GHashTable *hash,
gint id,
const gchar *dirname);
static GwyLawn* anfatec_load_curvemap (GHashTable *hash,
GHashTable *extra_meta,
gint id,
const gchar *dirname);
static gboolean anfatec_try_to_find_data (const gchar *dirname_glib,
const gchar *basename_sys,
gchar **buffer,
gsize *size);
static AnfatecFVMatrix* read_fv_matrix_file (gchar *buffer,
gint header_cols,
gint header_rows,
GError **error);
static void anfatec_fv_matrix_free (AnfatecFVMatrix *fvm);
static gdouble lawn_reduce_avg (gint ncurves,
gint curvelength,
const gdouble *curvedata,
gpointer user_data);
static GwyContainer* get_meta (GHashTable *hash);
static void add_meta (gpointer hkey,
gpointer hvalue,
gpointer user_data);
static GwyModuleInfo module_info = {
GWY_MODULE_ABI_VERSION,
&module_register,
N_("Imports Anfatec data files (two-part .txt + .int)."),
"Yeti <yeti@gwyddion.net>",
"0.5",
"David Nečas (Yeti)",
"2010",
};
GWY_MODULE_QUERY2(module_info, anfatec)
static gboolean
module_register(void)
{
gwy_file_func_register("anfatec",
N_("Anfatec files (.par + .int)"),
(GwyFileDetectFunc)&anfatec_detect,
(GwyFileLoadFunc)&anfatec_load,
NULL,
NULL);
return TRUE;
}
static gint
anfatec_detect(const GwyFileDetectInfo *fileinfo,
gboolean only_name)
{
FILE *fh;
gchar *parameterfile;
gchar *buf;
guint size;
gboolean result;
if (only_name)
return 0;
if (strstr(fileinfo->head, MAGIC))
return 90;
if (!(parameterfile = anfatec_find_parameterfile(fileinfo->name)))
return 0;
fh = gwy_fopen(parameterfile, "r");
if (!fh) {
g_free(parameterfile);
return 0;
}
gwy_debug("Parameterfile opened");
buf = g_new(gchar, GWY_FILE_DETECT_BUFFER_SIZE);
size = fread(buf, 1, GWY_FILE_DETECT_BUFFER_SIZE, fh);
gwy_debug("size: %u", size);
buf[MIN(GWY_FILE_DETECT_BUFFER_SIZE-1, size)] = '\0';
result = (strstr(buf, MAGIC) != NULL);
gwy_debug("result: %d", result);
fclose(fh);
g_free(buf);
g_free(parameterfile);
return result ? 90 : 0;
}
static gchar*
anfatec_find_parameterfile(const gchar *filename)
{
gchar *paramfile;
/* 4 is the length of .int, we start with removal of that. */
guint len, removed = 4, ntries = 3;
gboolean removed_something;
if (g_str_has_suffix(filename, ".txt") || g_str_has_suffix(filename, ".TXT"))
return g_strdup(filename);
if (g_str_has_suffix(filename, ".int") || g_str_has_suffix(filename, ".INT")) {
gwy_debug("File name ends with .int");
paramfile = g_strdup(filename);
len = strlen(paramfile);
do {
removed_something = FALSE;
/* Try to add .txt, both lower- and uppercase */
strcpy(paramfile + len-removed, ".txt");
gwy_debug("Looking for %s", paramfile);
if (g_file_test(paramfile, G_FILE_TEST_IS_REGULAR | G_FILE_TEST_IS_SYMLINK)) {
gwy_debug("Found.");
return paramfile;
}
gwy_debug("Looking for %s", paramfile);
strcpy(paramfile + len-removed, ".TXT");
if (g_file_test(paramfile, G_FILE_TEST_IS_REGULAR | G_FILE_TEST_IS_SYMLINK)) {
gwy_debug("Found.");
return paramfile;
}
/* Remove a contiguous sequence matching [A-Z]+[a-z]*. This means something like TopoFwd. */
while (removed < len && g_ascii_islower(paramfile[len-removed-1])) {
removed_something = TRUE;
removed++;
}
while (removed < len && g_ascii_isupper(paramfile[len-removed-1])) {
removed_something = TRUE;
removed++;
}
} while (removed_something && removed < len && ntries--);
gwy_debug("No matching paramter file.");
g_free(paramfile);
}
return NULL;
}
static GwyContainer*
anfatec_load(const gchar *filename,
GwyRunType mode,
GError **error)
{
GwyContainer *container = NULL, *meta = NULL;
GHashTable *hash = NULL, *hash2 = NULL;
gchar *line, *value, *key, *dirname = NULL, *text = NULL;
GError *err = NULL;
gsize size;
gint sectdepth, id, maxid;
if (!g_file_get_contents(filename, &text, &size, &err)) {
err_GET_FILE_CONTENTS(error, &err);
return NULL;
}
if (!gwy_memmem(text, MIN(size, GWY_FILE_DETECT_BUFFER_SIZE), MAGIC, MAGIC_SIZE)) {
gchar *paramfile = anfatec_find_parameterfile(filename);
/* If we are given data but find a suitable parameter file, recurse. */
if (paramfile) {
if (!gwy_strequal(paramfile, filename))
container = anfatec_load(paramfile, mode, error);
else {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_IO,
_("The parameter file cannot be loaded."));
}
g_free(paramfile);
}
else {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_IO,
_("Cannot find the corresponding parameter file."));
}
return container;
}
/* Cannot use GwyTextHeaderParser due to unlabelled sections. */
hash = g_hash_table_new_full(g_str_hash, g_str_equal, g_free, NULL);
hash2 = g_hash_table_new_full(g_str_hash, g_str_equal, g_free, g_free);
sectdepth = 0;
id = -1;
while ((line = gwy_str_next_line(&text))) {
g_strstrip(line);
if (!line[0] || line[0] == ';')
continue;
if (gwy_strequal(line, "FileDescBegin")) {
if (sectdepth) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("FileDescBegin cannot be inside another FileDesc."));
goto fail;
}
sectdepth++;
id++;
continue;
}
if (gwy_strequal(line, "FileDescEnd")) {
if (!sectdepth) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("FileDescEnd has no corresponding FileDescBegin."));
goto fail;
}
sectdepth--;
continue;
}
if (!(value = strchr(line, ':'))) {
g_warning("Cannot parse line %s", line);
continue;
}
*value = '\0';
value++;
g_strchomp(line);
g_strchug(value);
if (sectdepth)
key = g_strdup_printf("%d::%s", id, line);
else
key = g_strdup(line);
gwy_debug("<%s> = <%s>", key, value);
g_hash_table_replace(hash, key, value);
}
if (sectdepth) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("FileDescBegin has no corresponding FileDescEnd."));
goto fail;
}
if (id == -1) {
err_NO_DATA(error);
goto fail;
}
if (!require_keys(hash, error, "xPixel", "yPixel", "XScanRange", "YScanRange", NULL))
goto fail;
container = gwy_container_new();
meta = get_meta(hash);
dirname = g_path_get_dirname(filename);
maxid = id;
for (id = 0; id <= maxid; id++) {
GwyDataField *dfield;
GwyLawn *lawn;
GwyContainer *metacopy;
const gchar *dataname, *title;
gint ncurves;
key = g_strdup_printf("%d::Caption", id);
title = g_hash_table_lookup(hash, key);
g_free(key);
key = g_strdup_printf("%d::FileName", id);
dataname = g_hash_table_lookup(hash, key);
g_free(key);
g_hash_table_remove_all(hash2);
if ((lawn = anfatec_load_curvemap(hash, hash2, id, dirname))) {
ncurves = gwy_lawn_get_n_curves(lawn);
gwy_container_set_object(container, gwy_app_get_lawn_key_for_id(id), lawn);
if (meta) {
metacopy = gwy_container_duplicate(meta);
g_hash_table_foreach(hash2, add_meta, metacopy);
gwy_container_set_object(container, gwy_app_get_lawn_meta_key_for_id(id), metacopy);
g_object_unref(metacopy);
}
if (title) {
gwy_container_set_const_string(container, gwy_app_get_lawn_title_key_for_id(id), title);
gwy_lawn_set_curve_label(lawn, ncurves-1, title);
}
dfield = gwy_data_field_new(gwy_lawn_get_xres(lawn), gwy_lawn_get_yres(lawn),
gwy_lawn_get_xreal(lawn), gwy_lawn_get_yreal(lawn),
FALSE);
gwy_lawn_reduce_to_plane(lawn, dfield, lawn_reduce_avg, NULL);
gwy_si_unit_assign(gwy_data_field_get_si_unit_z(dfield), gwy_lawn_get_si_unit_curve(lawn, ncurves-1));
gwy_container_set_object(container, gwy_app_get_lawn_preview_key_for_id(id), dfield);
g_object_unref(dfield);
gwy_file_curve_map_import_log_add(container, id, NULL, dataname);
}
else if ((dfield = anfatec_load_image(hash, id, dirname))) {
gwy_container_set_object(container, gwy_app_get_data_key_for_id(id), dfield);
if (meta) {
metacopy = gwy_container_duplicate(meta);
gwy_container_set_object(container, gwy_app_get_data_meta_key_for_id(id), metacopy);
g_object_unref(metacopy);
}
if (title)
gwy_container_set_const_string(container, gwy_app_get_data_title_key_for_id(id), title);
else
gwy_app_channel_title_fall_back(container, id);
gwy_file_channel_import_log_add(container, id, NULL, dataname);
}
}
if (!gwy_container_get_n_items(container)) {
GWY_OBJECT_UNREF(container);
err_NO_DATA(error);
}
fail:
GWY_OBJECT_UNREF(meta);
g_free(dirname);
g_free(text);
if (hash)
g_hash_table_destroy(hash);
if (hash2)
g_hash_table_destroy(hash2);
return container;
}
static GwyDataField*
anfatec_load_image(GHashTable *hash,
gint id,
const gchar *dirname)
{
GwyDataField *dfield = NULL;
GwySIUnit *unitx = NULL, *unity = NULL, *unitz = NULL;
const gchar *filename;
gint xres, yres, power10x, power10y, power10z;
gdouble xreal, yreal, q, offset;
gchar *buffer = NULL;
gsize size;
gchar *key, *value;
xres = atoi(g_hash_table_lookup(hash, "xPixel"));
yres = atoi(g_hash_table_lookup(hash, "yPixel"));
if (err_DIMENSION(NULL, xres) || err_DIMENSION(NULL, yres))
return NULL;
/* Do not even try to load the file as an image if there is HeaderCols, i.e. it looks like a curve map. It would
* probably succeed because the text curve map file is large enough, but it would be utter nonsense. */
key = g_strdup_printf("%d::HeaderCols", id);
value = g_hash_table_lookup(hash, key);
g_free(key);
if (value) {
gwy_debug("found HeaderCols, not trying to load it as an image");
return NULL;
}
key = g_strdup_printf("%d::FileName", id);
filename = g_hash_table_lookup(hash, key);
g_free(key);
if (!filename) {
g_warning("Missing FileName in channel %d.", id);
return NULL;
}
gwy_debug("filename: %s", filename);
if (!anfatec_try_to_find_data(dirname, filename, &buffer, &size)) {
g_warning("Cannot open %s.", filename);
goto fail;
}
if (err_SIZE_MISMATCH(NULL, xres*yres*sizeof(gint32), size, FALSE)) {
g_warning("File is too short %s.", filename);
goto fail;
}
xreal = g_ascii_strtod(g_hash_table_lookup(hash, "XScanRange"), NULL);
xreal = fabs(xreal);
if (!(xreal > 0.0)) {
g_warning("Real x size is 0.0, fixing to 1.0");
xreal = 1.0;
}
yreal = g_ascii_strtod(g_hash_table_lookup(hash, "YScanRange"), NULL);
if (!(yreal > 0.0)) {
g_warning("Real y size is 0.0, fixing to 1.0");
yreal = 1.0;
}
unitx = gwy_si_unit_new_parse(g_hash_table_lookup(hash, "XPhysUnit"), &power10x);
unity = gwy_si_unit_new_parse(g_hash_table_lookup(hash, "YPhysUnit"), &power10y);
if (!gwy_si_unit_equal(unitx, unity))
g_warning("X and Y units differ, using X");
key = g_strdup_printf("%d::PhysUnit", id);
unitz = gwy_si_unit_new_parse(g_hash_table_lookup(hash, key), &power10z);
g_free(key);
dfield = gwy_data_field_new(xres, yres, xreal*pow10(power10x), yreal*pow10(power10y), FALSE);
gwy_data_field_set_si_unit_xy(dfield, unitx);
gwy_data_field_set_si_unit_z(dfield, unitz);
if ((value = g_hash_table_lookup(hash, "xCenter"))) {
offset = (g_ascii_strtod(value, NULL) - 0.5*xreal)*pow10(power10x);
gwy_data_field_set_xoffset(dfield, offset);
}
if ((value = g_hash_table_lookup(hash, "yCenter"))) {
offset = (g_ascii_strtod(value, NULL) - 0.5*yreal)*pow10(power10y);
gwy_data_field_set_yoffset(dfield, offset);
}
q = pow10(power10z);
key = g_strdup_printf("%d::Scale", id);
if ((value = g_hash_table_lookup(hash, key)))
q *= g_ascii_strtod(value, NULL);
g_free(key);
gwy_convert_raw_data(buffer, xres*yres, 1,
GWY_RAW_DATA_SINT32, GWY_BYTE_ORDER_LITTLE_ENDIAN,
gwy_data_field_get_data(dfield), q, 0.0);
fail:
g_free(buffer);
GWY_OBJECT_UNREF(unitx);
GWY_OBJECT_UNREF(unity);
GWY_OBJECT_UNREF(unitz);
return dfield;
}
static GwyLawn*
anfatec_load_curvemap(GHashTable *hash,
GHashTable *extra_meta,
gint id,
const gchar *dirname)
{
AnfatecFVMatrix *fvm = NULL;
GwyLawn *lawn = NULL;
const gchar *filename;
gchar *key, *value, *buffer = NULL;
gsize size;
gint header_cols, xres, yres, zres, ncurves, i, j, k, ntotalcurves;
gint *abscissa_map = NULL;
gdouble *b, *datablock = NULL, *q = NULL;
gdouble qdata = 1.0;
GRegex *regex;
GMatchInfo *matchinfo;
key = g_strdup_printf("%d::FileName", id);
filename = g_hash_table_lookup(hash, key);
g_free(key);
if (!filename) {
g_warning("Missing FileName in channel %d.", id);
return NULL;
}
gwy_debug("filename: %s", filename);
key = g_strdup_printf("%d::HeaderCols", id);
value = g_hash_table_lookup(hash, key);
g_free(key);
if (!value)
return NULL;
header_cols = atoi(value);
gwy_debug("HeaderCols: %d", header_cols);
if (!anfatec_try_to_find_data(dirname, filename, &buffer, &size)) {
g_warning("Cannot open %s.", filename);
goto fail;
}
if (!(fvm = read_fv_matrix_file(buffer, header_cols, 2, NULL)))
goto fail;
GWY_FREE(buffer);
/* Create a map for filtering out constants. */
ntotalcurves = fvm->nabscissae;
ncurves = 0;
abscissa_map = g_new(gint, ntotalcurves);
for (i = 0; i < ntotalcurves; i++) {
abscissa_map[i] = -1;
if (fvm->is_changing[i])
abscissa_map[i] = ncurves++;
else {
key = g_strconcat("Matrix::", fvm->absnames[i], NULL);
value = g_strdup_printf("%g %s", fvm->absdata[i], fvm->absunits[i]);
gwy_debug("turning a constant channel to metadata <%s> = <%s>", key, value);
g_hash_table_replace(extra_meta, key, value);
}
}
xres = gwy_brick_get_xres(fvm->brick);
yres = gwy_brick_get_yres(fvm->brick);
zres = gwy_brick_get_zres(fvm->brick);
lawn = gwy_lawn_new(xres, yres, gwy_brick_get_xreal(fvm->brick), gwy_brick_get_yreal(fvm->brick), ncurves+1, 0);
gwy_lawn_set_xoffset(lawn, gwy_brick_get_xoffset(fvm->brick));
gwy_lawn_set_yoffset(lawn, gwy_brick_get_yoffset(fvm->brick));
gwy_si_unit_set_from_string(gwy_lawn_get_si_unit_xy(lawn), "m");
b = gwy_brick_get_data(fvm->brick);
q = g_new(gdouble, ntotalcurves);
for (i = 0; i < ntotalcurves; i++) {
if ((j = abscissa_map[i]) >= 0) {
gwy_lawn_set_curve_label(lawn, j, fvm->absnames[i]);
gwy_si_unit_set_from_string_parse(gwy_lawn_get_si_unit_curve(lawn, j), fvm->absunits[i], &k);
q[i] = pow10(k);
}
}
regex = g_regex_new("^.+_[0-9]+([A-Za-z]+)_Matrix\\.txt$", 0, 0, NULL);
g_assert(regex);
if (g_regex_match(regex, filename, 0, &matchinfo)) {
gchar *name = g_match_info_fetch(matchinfo, 1);
const gchar *unit = NULL;
gwy_debug("matched data kind from file name: %s", name);
if (gwy_stramong(name, "Phase", NULL))
unit = "deg";
else if (gwy_stramong(name, "Amplitude", "TB", "Force", NULL))
unit = "mV";
else {
gwy_info("Unknown data kind %s, cannot guess the unit.", name);
}
g_free(name);
if (unit) {
gwy_si_unit_set_from_string_parse(gwy_lawn_get_si_unit_curve(lawn, ncurves), unit, &k);
qdata = pow10(k);
}
}
else {
g_warning("Cannot parse Matrix file name %s.", filename);
}
g_match_info_free(matchinfo);
g_regex_unref(regex);
datablock = g_new(gdouble, zres*(ncurves + 1));
for (k = 0; k < zres; k++) {
for (i = 0; i < ntotalcurves; i++) {
if ((j = abscissa_map[i]) >= 0)
datablock[j*zres + k] = q[i]*fvm->absdata[k*ntotalcurves + i];
}
}
for (i = 0; i < yres; i++) {
for (j = 0; j < xres; j++) {
for (k = 0; k < zres; k++)
datablock[zres*ncurves + k] = qdata*b[k*xres*yres + i*xres + j];
gwy_lawn_set_curves(lawn, j, i, zres, datablock, NULL);
}
}
fail:
g_free(buffer);
g_free(datablock);
g_free(abscissa_map);
anfatec_fv_matrix_free(fvm);
return lawn;
}
/* We get the directory name in GLib encoding and the basename in system encoding. Which ensures lots of fun for the
* long winter evenings. */
static gboolean
anfatec_try_to_find_data(const gchar *dirname_glib,
const gchar *basename_sys,
gchar **buffer,
gsize *size)
{
static const gchar *encodings[] = {
"UTF-16", "CP1252", "CP1251", "CP1250", "CP1253", "CP1254", "CP1255", "CP1256", "CP1257", "CP1258",
};
guint i;
gssize len = strlen(basename_sys);
gchar *fullname_asis;
/* Fingers crossed... */
fullname_asis = g_build_filename(dirname_glib, basename_sys, NULL);
gwy_debug("Trying as-is: <%s>", fullname_asis);
if (g_file_get_contents(fullname_asis, buffer, size, NULL)) {
g_free(fullname_asis);
return TRUE;
}
for (i = 0; i < G_N_ELEMENTS(encodings); i++) {
gchar *filename_utf8 = g_convert(basename_sys, len, "UTF-8", encodings[i], NULL, NULL, NULL);
if (filename_utf8) {
gchar *filename_glib = g_filename_from_utf8(filename_utf8, -1, NULL, NULL, NULL);
g_free(filename_utf8);
if (filename_glib) {
gchar *fullname_glib = g_build_filename(dirname_glib, filename_glib, NULL);
g_free(filename_glib);
gwy_debug("Trying encoding %s: <%s>", encodings[i], fullname_glib);
if (g_file_get_contents(fullname_glib, buffer, size, NULL)) {
g_free(fullname_glib);
return TRUE;
}
}
}
}
return FALSE;
}
static gboolean
analyse_header_line(const gchar *line, gint *header_cols, gint *coord_cols)
{
const gchar *q;
gboolean in_header = TRUE;
gint hc = 0, cc = 0;
while (line) {
q = strchr(line, '\t');
if (q)
q++;
if (in_header) {
if (g_ascii_isdigit(line[0]) || line[0] == '-' || line[0] == '+' || line[0] == '.')
in_header = FALSE;
}
if (in_header)
hc++;
else
cc++;
line = q;
}
gwy_debug("header_cols = %d (expecting %d)", hc, *header_cols);
gwy_debug("coord_cols = %d (expecting %d)", cc, *coord_cols);
if (*header_cols >= 0 && *header_cols != hc)
return FALSE;
if (*coord_cols >= 0 && *coord_cols != cc)
return FALSE;
*header_cols = hc;
*coord_cols = cc;
return TRUE;
}
static gchar**
read_strings(gchar *line, gint n, gchar **end)
{
gchar *q;
gchar **strs = g_new0(gchar*, n+1);
gint i;
for (i = 0; i < n; i++) {
q = strchr(line, '\t');
if (q)
*q = '\0';
else if (i+1 < n) {
g_strfreev(strs);
return NULL;
}
else
q = line + strlen(line)-1;
strs[i] = g_strdup(line);
gwy_debug("str[%d] = <%s>", i, strs[i]);
line = q+1;
}
*end = line;
return strs;
}
static gboolean
read_numbers(gchar *line, gdouble *values, gint n, gchar **end)
{
gchar *q, *e;
gint i;
/* Unfortunately, the text data seem represented in a random locale. This function is only used then the rest
* of the line contains just numbers. So just fix all commas to dots. */
g_strdelimit(line, ",", '.');
for (i = 0; i < n; i++) {
q = strchr(line, '\t');
if (q)
*q = '\0';
else if (i+1 < n)
return FALSE;
else
q = line + strlen(line)-1;
values[i] = g_ascii_strtod(line, &e);
if (*e != '\0')
return FALSE;
line = q+1;
}
*end = line;
return TRUE;
}
static AnfatecFVMatrix*
read_fv_matrix_file(gchar *buffer,
gint header_cols, gint header_rows,
GError **error)
{
AnfatecFVMatrix *fvm = NULL;
gchar *line, *p, *end;
gint lineno = 0, ncols = -1, totalcols, ntoread, xres, yres, zres, i, j, k;
gdouble *xdata = NULL, *ydata = NULL, *interleaved = NULL, *datatoread, *d, *b;
gint *xyindex = NULL;
GArray *data = NULL;
gboolean ok = FALSE;
GwyXY offsets, steps;
if (header_rows >= 0 && header_rows != 2) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("Wrong number of header rows or columns."));
return NULL;
}
/* Physically read the file. */
data = g_array_new(FALSE, FALSE, sizeof(gdouble));
p = buffer;
fvm = g_new0(AnfatecFVMatrix, 1);
while ((line = gwy_str_next_line(&p))) {
g_strstrip(line);
if (lineno < 2) {
if (!analyse_header_line(line, &header_cols, &ncols)) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("Wrong number of header rows or columns."));
goto fail;
}
if (!header_cols || !ncols) {
err_NO_DATA(error);
goto fail;
}
totalcols = header_cols + ncols;
if (!lineno) {
fvm->nabscissae = header_cols;
fvm->absnames = read_strings(line, header_cols, &end);
line = end;
xdata = g_new(gdouble, ncols);
ydata = g_new(gdouble, ncols);
datatoread = xdata;
}
else {
fvm->absunits = read_strings(line, header_cols, &end);
line = end;
datatoread = ydata;
}
ntoread = ncols;
}
else {
g_array_set_size(data, data->len + totalcols);
datatoread = &g_array_index(data, gdouble, data->len - totalcols);
ntoread = totalcols;
}
if (!read_numbers(line, datatoread, ntoread, &end)) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("Cannot parse data values at line %d."), lineno+1);
goto fail;
}
if (*end) {
g_warning("Extra data at line %d.", lineno+1);
}
lineno++;
}
gwy_debug("read %d lines", lineno);
if (lineno < 3) {
err_NO_DATA(error);
goto fail;
}
zres = lineno-2;
/* Check if x and y form a grid. */
interleaved = g_new(gdouble, 2*ncols);
for (i = 0; i < ncols; i++) {
interleaved[2*i + 0] = xdata[i];
interleaved[2*i + 1] = ydata[i];
}
if (!(xyindex = gwy_check_regular_2d_grid(interleaved, 2, ncols, -1.0, &xres, &yres, &offsets, &steps))) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("Coordinates do not form a regular grid."));
goto fail;
}
gwy_debug("xres %d, yres %d", xres, yres);
/* Make a Brick where we put all the data in correct order and separate from abscissare. The called with convert
* it all to some Lawn. */
fvm->brick = gwy_brick_new(xres, yres, zres, xres*1e-6*steps.x, yres*1e-6*steps.y, 1.0, FALSE);
gwy_brick_set_xoffset(fvm->brick, 1e-6*offsets.x);
gwy_brick_set_yoffset(fvm->brick, 1e-6*offsets.y);
d = &g_array_index(data, gdouble, 0);
b = gwy_brick_get_data(fvm->brick);
fvm->absdata = g_new(gdouble, zres*header_cols);
for (k = 0; k < zres; k++) {
for (i = 0; i < header_cols; i++)
fvm->absdata[k*header_cols + i] = d[k*totalcols + i];
for (i = 0; i < yres; i++) {
for (j = 0; j < xres; j++)
b[k*xres*yres + i*xres + j] = d[k*totalcols + header_cols + xyindex[i*xres + j]];
}
}
/* Find out which abscissae do not change. We filter them out since they just take space. */
fvm->is_changing = g_new0(gboolean, header_cols);
for (i = 0; i < header_cols; i++) {
for (k = 1; k < zres; k++) {
if (fvm->absdata[k*header_cols + i] != fvm->absdata[i]) {
fvm->is_changing[i] = TRUE;
break;
}
}
gwy_debug("abscissa[%d] is %s", i, fvm->is_changing[i] ? "changing" : "constant");
}
ok = TRUE;
fail:
if (!ok) {
anfatec_fv_matrix_free(fvm);
fvm = NULL;
}
g_free(xyindex);
g_free(interleaved);
g_free(xdata);
g_free(ydata);
if (data)
g_array_free(data, TRUE);
return fvm;
}
static void
anfatec_fv_matrix_free(AnfatecFVMatrix *fvm)
{
if (!fvm)
return;
g_strfreev(fvm->absnames);
g_strfreev(fvm->absunits);
g_free(fvm->absdata);
g_free(fvm->is_changing);
GWY_OBJECT_UNREF(fvm->brick);
g_free(fvm);
}
static gdouble
lawn_reduce_avg(gint ncurves, gint curvelength, const gdouble *curvedata,
G_GNUC_UNUSED gpointer user_data)
{
gdouble s = 0.0;
gint i;
if (!curvelength)
return 0.0;
curvedata += (ncurves - 1)*curvelength;
for (i = 0; i < curvelength; i++)
s += curvedata[i];
return s/curvelength;
}
static GwyContainer*
get_meta(GHashTable *hash)
{
GwyContainer *meta = gwy_container_new();
g_hash_table_foreach(hash, add_meta, meta);
if (gwy_container_get_n_items(meta))
return meta;
g_object_unref(meta);
return NULL;
}
static void
add_meta(gpointer hkey, gpointer hvalue, gpointer user_data)
{
GwyContainer *meta = (GwyContainer*)user_data;
gchar *value = hvalue, *skey = hkey;
if (!strlen(value) || !strlen(skey) || g_ascii_isdigit(skey[0]))
return;
gwy_container_set_const_string_by_name(meta, skey, value);
}
/* vim: set cin columns=120 tw=118 et ts=4 sw=4 cino=>1s,e0,n0,f0,{0,}0,^0,\:1s,=0,g1s,h0,t0,+1s,c3,(0,u0 : */
|