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/*
* Copyright (C) 2015-2018 S[&]T, The Netherlands.
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
*
* 2. Redistributions in binary form must reproduce the above copyright
* notice, this list of conditions and the following disclaimer in the
* documentation and/or other materials provided with the distribution.
*
* 3. Neither the name of the copyright holder nor the names of its
* contributors may be used to endorse or promote products derived from
* this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
*/
#include "harp-internal.h"
#include "hashtable.h"
#include <sys/types.h>
#include <sys/stat.h>
#include <assert.h>
#include <errno.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#ifdef HAVE_DIRENT_H
#include <dirent.h>
#endif
#ifdef WIN32
#include "windows.h"
#endif
/** \defgroup harp_dataset HARP harp_dataset
* The HARP harp_dataset module contains everything regarding HARP datasets.
*
* A Dataset contains a list of references to HARP products together with optional metadata on each product.
* The primary reference to a product is the value of the 'source_product' global attribute of a HARP product.
*/
/**
* Check that filename is a directory and can be read.
*/
static int is_directory(const char *directoryname)
{
struct stat statbuf;
/* stat() the directory to be opened */
if (stat(directoryname, &statbuf) != 0)
{
if (errno == ENOENT)
{
harp_set_error(HARP_ERROR_FILE_NOT_FOUND, "could not find '%s'", directoryname);
}
else
{
harp_set_error(HARP_ERROR_FILE_OPEN, "could not open '%s' (%s)", directoryname, strerror(errno));
}
return -1;
}
/* check that the file is a directory */
if (statbuf.st_mode & S_IFDIR)
{
/* Return 'true' */
return 1;
}
/* Return 'false' */
return 0;
}
static int add_path_file(harp_dataset *dataset, const char *filename, const char *options)
{
char line[HARP_MAX_PATH_LENGTH];
FILE *stream;
stream = fopen(filename, "r");
if (stream == NULL)
{
harp_set_error(HARP_ERROR_FILE_OPEN, "cannot open pth file '%s'", filename);
return -1;
}
while (fgets(line, HARP_MAX_PATH_LENGTH, stream) != NULL)
{
long length = (long)strlen(line);
/* Trim the line */
while (length > 0 && (line[length - 1] == '\r' || line[length - 1] == '\n'))
{
length--;
}
line[length] = '\0';
/* skip empty lines and lines starting with '#' */
if (length > 0 && line[0] != '#')
{
if (harp_dataset_import(dataset, line, options) != 0)
{
fclose(stream);
return -1;
}
}
}
fclose(stream);
return 0;
}
static int add_directory(harp_dataset *dataset, const char *pathname, const char *options)
{
#ifdef WIN32
WIN32_FIND_DATA FileData;
HANDLE hSearch;
BOOL fFinished;
char *pattern;
pattern = malloc(strlen(pathname) + 4 + 1);
if (pattern == NULL)
{
harp_set_error(HARP_ERROR_OUT_OF_MEMORY, "out of memory (could not allocate %lu bytes) (%s:%u)",
(long)strlen(pathname) + 4 + 1, __FILE__, __LINE__);
return -1;
}
sprintf(pattern, "%s\\*.*", pathname);
hSearch = FindFirstFile(pattern, &FileData);
free(pattern);
if (hSearch == INVALID_HANDLE_VALUE)
{
if (GetLastError() == ERROR_FILE_NOT_FOUND || GetLastError() == ERROR_NO_MORE_FILES)
{
/* no files found */
return 0;
}
harp_set_error(HARP_ERROR_INVALID_ARGUMENT, "could not access directory '%s'", pathname);
return -1;
}
fFinished = FALSE;
while (!fFinished)
{
if (!(FileData.dwFileAttributes & FILE_ATTRIBUTE_DIRECTORY))
{
char *filepath;
filepath = malloc(strlen(pathname) + 1 + strlen(FileData.cFileName) + 1);
if (filepath == NULL)
{
harp_set_error(HARP_ERROR_OUT_OF_MEMORY, "out of memory (could not allocate %lu bytes) (%s:%u)",
(long)strlen(pathname) + 1 + strlen(FileData.cFileName) + 1, __FILE__, __LINE__);
FindClose(hSearch);
return -1;
}
sprintf(filepath, "%s\\%s", pathname, FileData.cFileName);
if (harp_dataset_import(dataset, filepath, options) != 0)
{
free(filepath);
FindClose(hSearch);
return -1;
}
free(filepath);
}
if (!FindNextFile(hSearch, &FileData))
{
if (GetLastError() == ERROR_NO_MORE_FILES)
{
fFinished = TRUE;
}
else
{
harp_set_error(HARP_ERROR_INVALID_ARGUMENT, "could not retrieve directory entry");
FindClose(hSearch);
return -1;
}
}
}
FindClose(hSearch);
#else
DIR *dirp = NULL;
struct dirent *dp = NULL;
/* Open the directory */
dirp = opendir(pathname);
if (dirp == NULL)
{
harp_set_error(HARP_ERROR_INVALID_ARGUMENT, "could not open directory %s", pathname);
return -1;
}
/* Walk through files in directory and add filenames to dataset */
while ((dp = readdir(dirp)) != NULL)
{
char *filepath = NULL;
/* Skip '.' and '..' */
if (strcmp(dp->d_name, ".") == 0 || strcmp(dp->d_name, "..") == 0)
{
continue;
}
/* Add path before filename */
filepath = malloc(strlen(pathname) + 1 + strlen(dp->d_name) + 1);
if (filepath == NULL)
{
harp_set_error(HARP_ERROR_OUT_OF_MEMORY, "out of memory (could not allocate %lu bytes) (%s:%u)",
(long)strlen(pathname) + 1 + strlen(dp->d_name) + 1, __FILE__, __LINE__);
closedir(dirp);
return -1;
}
sprintf(filepath, "%s/%s", pathname, dp->d_name);
if (harp_dataset_import(dataset, filepath, options) != 0)
{
free(filepath);
closedir(dirp);
return -1;
}
free(filepath);
}
closedir(dirp);
#endif
return 0;
}
/** \addtogroup harp_dataset
* @{
*/
/** Create new HARP dataset.
* The metadata will be intialized with zero product metadata elements.
* \param new_dataset Pointer to the C variable where the new HARP product metadata will be stored.
* \return
* \arg \c 0, Success.
* \arg \c -1, Error occurred (check #harp_errno).
*/
LIBHARP_API int harp_dataset_new(harp_dataset **new_dataset)
{
harp_dataset *dataset = NULL;
dataset = (harp_dataset *)malloc(sizeof(harp_dataset));
if (dataset == NULL)
{
harp_set_error(HARP_ERROR_OUT_OF_MEMORY, "out of memory (could not allocate %lu bytes) (%s:%u)",
sizeof(harp_dataset), __FILE__, __LINE__);
return -1;
}
dataset->product_to_index = hashtable_new(0);
dataset->sorted_index = NULL;
dataset->num_products = 0;
dataset->metadata = NULL;
dataset->source_product = NULL;
*new_dataset = dataset;
return 0;
}
/** Delete HARP dataset.
* \param dataset Pointer to the dataset to free.
*/
LIBHARP_API void harp_dataset_delete(harp_dataset *dataset)
{
if (dataset == NULL)
{
return;
}
if (dataset->product_to_index != NULL)
{
hashtable_delete(dataset->product_to_index);
}
if (dataset->sorted_index != NULL)
{
free(dataset->sorted_index);
}
if (dataset->source_product != NULL)
{
long i;
for (i = 0; i < dataset->num_products; i++)
{
free(dataset->source_product[i]);
}
free(dataset->source_product);
}
if (dataset->metadata != NULL)
{
long i;
for (i = 0; i < dataset->num_products; i++)
{
harp_product_metadata_delete(dataset->metadata[i]);
}
free(dataset->metadata);
}
free(dataset);
}
/** Print HARP dataset.
* \param dataset Pointer to the dataset to print.
* \param print Pointer to the function that should be used for printing.
*/
LIBHARP_API void harp_dataset_print(harp_dataset *dataset, int (*print) (const char *, ...))
{
long i;
print("filename,datetime_start,datetime_stop,time,latitude,longitude,vertical,spectral,source_product\n");
for (i = 0; i < dataset->num_products; i++)
{
if (dataset->metadata[i] != NULL)
{
harp_product_metadata_print(dataset->metadata[i], print);
}
else
{
print(",,,,,,,,%s\n", dataset->source_product[i]);
}
}
}
/** Import metadata for products into the dataset.
* If path is a directory then all files (recursively) from that directory are added to the dataset.
* If path references a .pth file then the file paths from that text file (one per line) are imported.
* These file paths can be absolute or relative and can point to files, directories, or other .pth files.
* If path references a product file then that file is added to the dataset. Trying to add a file that is not supported
* by HARP will result in an error.
*
* Note that datasets cannot have multiple entries with the same 'source_product' value. Therefore, for each product
* where the dataset already contained an entry with the same 'source_product' value, the metadata of that entry is
* replaced with the new metadata (instead of adding a new entry to the dataset or raising an error).
*
* \param dataset Dataset into which to import the metadata.
* \param path Path to either a directory containing product files, a .pth file, or a single product file.
* \param options Ingestion module specific options (optional); should be specified as a semi-colon separated
* string of key=value pair; only used for product files that are not already in HARP format.
* \return
* \arg \c 0, Success.
* \arg \c -1, Error occurred (check #harp_errno).
*/
LIBHARP_API int harp_dataset_import(harp_dataset *dataset, const char *path, const char *options)
{
int result;
result = is_directory(path);
if (result == -1)
{
return -1;
}
if (result)
{
return add_directory(dataset, path, options);
}
else
{
harp_product_metadata *metadata = NULL;
long length = (long)strlen(path);
if (length > 4 && strcmp(&path[length - 4], ".pth") == 0)
{
return add_path_file(dataset, path, options);
}
/* Import the metadata */
if (harp_import_product_metadata(path, options, &metadata) != 0)
{
return -1;
}
return harp_dataset_add_product(dataset, metadata->source_product, metadata);
}
}
/** Lookup the index of source_product in the given dataset.
* \param dataset Dataset to get index in.
* \param source_product Source product reference.
* \param index Pointer to the C variable where the index in the dataset for the product is returned.
* \return
* \arg \c 0, Success.
* \arg \c -1, Error occurred (check #harp_errno).
*/
LIBHARP_API int harp_dataset_get_index_from_source_product(harp_dataset *dataset, const char *source_product,
long *index)
{
long product_index;
product_index = hashtable_get_index_from_name(dataset->product_to_index, source_product);
if (product_index < 0)
{
harp_set_error(HARP_ERROR_INVALID_NAME, "source product '%s' does not exist", source_product);
return -1;
}
*index = product_index;
return 0;
}
/** Test if dataset contains an entry with the specified source product reference.
* \param dataset Dataset in which to find the product.
* \param source_product Source product reference.
* \return
* \arg \c 0, Dataset does not contain a product with the specific source reference.
* \arg \c 1, Dataset contains a product with the specific source reference.
*/
LIBHARP_API int harp_dataset_has_product(harp_dataset *dataset, const char *source_product)
{
return hashtable_get_index_from_name(dataset->product_to_index, source_product) >= 0;
}
/** Add a product reference to a dataset.
* \param dataset Dataset in which to add a new entry.
* \param source_product The source product reference of the new entry.
* \param metadata The product metadata of the new entry (can be NULL); the dataset is the new owner of metadata.
* \return
* \arg \c 0, Success.
* \arg \c -1, Error occurred (check #harp_errno).
*/
LIBHARP_API int harp_dataset_add_product(harp_dataset *dataset, const char *source_product,
harp_product_metadata *metadata)
{
if (metadata != NULL && strcmp(metadata->source_product, source_product) != 0)
{
harp_set_error(HARP_ERROR_INVALID_ARGUMENT, "invalid source product '%s' in metadata, expected '%s'",
metadata->source_product, source_product);
return -1;
}
/* if source product does not already appear, add it */
if (!harp_dataset_has_product(dataset, source_product))
{
long index;
long i;
/* Make space for new entry */
if (dataset->num_products % BLOCK_SIZE == 0)
{
char **new_source_product;
long *new_sorted_index;
harp_product_metadata **new_metadata;
/* grow the source_product array by one block */
new_source_product = realloc(dataset->source_product,
(dataset->num_products + BLOCK_SIZE) * sizeof(char **));
if (new_source_product == NULL)
{
harp_set_error(HARP_ERROR_OUT_OF_MEMORY, "out of memory (could not allocate %lu bytes) (%s:%u)",
(dataset->num_products + BLOCK_SIZE) * sizeof(char **), __FILE__, __LINE__);
return -1;
}
dataset->source_product = new_source_product;
new_sorted_index = realloc(dataset->sorted_index, (dataset->num_products + BLOCK_SIZE) * sizeof(long));
if (new_sorted_index == NULL)
{
harp_set_error(HARP_ERROR_OUT_OF_MEMORY, "out of memory (could not allocate %lu bytes) (%s:%u)",
(dataset->num_products + BLOCK_SIZE) * sizeof(long), __FILE__, __LINE__);
return -1;
}
dataset->sorted_index = new_sorted_index;
new_metadata = realloc(dataset->metadata,
(dataset->num_products + BLOCK_SIZE) * sizeof(harp_product_metadata *));
if (new_metadata == NULL)
{
harp_set_error(HARP_ERROR_OUT_OF_MEMORY, "out of memory (could not allocate %lu bytes) (%s:%u)",
(dataset->num_products + BLOCK_SIZE) * sizeof(harp_product_metadata *), __FILE__,
__LINE__);
return -1;
}
dataset->metadata = new_metadata;
/* zero-out metadata entries; as these are only optionally set in the future */
for (i = dataset->num_products; i < (dataset->num_products + BLOCK_SIZE); i++)
{
dataset->metadata[i] = NULL;
}
}
/* add newly appended item into the list of sorted indices */
index = 0;
while (index < dataset->num_products &&
strcmp(source_product, dataset->source_product[dataset->sorted_index[index]]) > 0)
{
index++;
}
for (i = dataset->num_products; i > index; i--)
{
dataset->sorted_index[i] = dataset->sorted_index[i - 1];
}
dataset->sorted_index[index] = dataset->num_products;
dataset->num_products++;
dataset->source_product[dataset->num_products - 1] = strdup(source_product);
if (dataset->source_product[dataset->num_products - 1] == NULL)
{
harp_set_error(HARP_ERROR_OUT_OF_MEMORY, "out of memory (failed to duplicate string) (%s:%u)",
__FILE__, __LINE__);
return -1;
}
if (hashtable_add_name(dataset->product_to_index, dataset->source_product[dataset->num_products - 1]) != 0)
{
assert(0);
exit(1);
}
}
if (metadata)
{
long index;
if (harp_dataset_get_index_from_source_product(dataset, source_product, &index))
{
return -1;
}
/* Delete existing metadata for this product */
if (dataset->metadata[index] != NULL)
{
harp_product_metadata_delete(dataset->metadata[index]);
}
/* Set the metadata for this source_product */
dataset->metadata[index] = metadata;
}
return 0;
}
/** @} */
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