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import sys
import os
from setuptools import setup
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
#ext_modules = [Extension("harvest-phylogeny", ["./src/harvest-phylogeny.py"]),Extension("harvest-snps",["./src/harvest-snps.py"]), Extension("harvest-alignments",["./src/harvest-alignments.py"]), Extension("harvest-backbone",["./src/harvest-backbone.py"]),Extension("harvest-variants",["./src/harvest-variants.py"])]
# Utility function to read the README file.
# Used for the long_description. It's nice, because now 1) we have a top level
# README file and 2) it's easier to type in the README file than to put a raw
# string in below ...
def read(fname):
return open(os.path.join(os.path.dirname(__file__), fname)).read()
setup(
name = "ParSNP",
version = "1.0b",
author = "Brian Ondov & Todd J. Treangen",
author_email = "treangen+ParSNP@gmail.com",
description = ("Ultrafast core genome alignment and WGT"),
license = "Perl Artistic License",
keywords = "multialignment snps bionformatics",
url = "http://github.com/MGI/ParSNP/wiki",
long_description=read('README.md'),
classifiers=[
"Development Status :: 3 - Alpha"
],
scripts=['src/harvest-phylogeny.py', 'src/harvest-snps.py', 'src/harvest-alignments.py', 'src/harvest-backbone.py', 'src/harvest-variants.py'],
# ext_modules = ext_modules,
cmdclass = {'build_ext': build_ext}
)
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