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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import org.junit.After;
import org.junit.Before;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5F {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testF.h5";
private static final int COUNT_OBJ_FILE = 1;
private static final int COUNT_OBJ_DATASET = 0;
private static final int COUNT_OBJ_GROUP = 0;
private static final int COUNT_OBJ_DATATYPE = 0;
private static final int COUNT_OBJ_ATTR = 0;
private static final int COUNT_OBJ_ALL = (COUNT_OBJ_FILE
+ COUNT_OBJ_DATASET + COUNT_OBJ_GROUP + COUNT_OBJ_DATATYPE + COUNT_OBJ_ATTR);
private static final int[] OBJ_COUNTS = { COUNT_OBJ_FILE,
COUNT_OBJ_DATASET, COUNT_OBJ_GROUP, COUNT_OBJ_DATATYPE,
COUNT_OBJ_ATTR, COUNT_OBJ_ALL };
private static final int[] OBJ_TYPES = { HDF5Constants.H5F_OBJ_FILE,
HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP,
HDF5Constants.H5F_OBJ_DATATYPE, HDF5Constants.H5F_OBJ_ATTR,
HDF5Constants.H5F_OBJ_ALL };
long H5fid = HDF5Constants.H5I_INVALID_HID;
private final void _deleteFile(String filename) {
File file = new File(filename);
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {}
}
}
@Before
public void createH5file()
throws HDF5LibraryException, NullPointerException {
assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
public void deleteH5file() throws HDF5LibraryException {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = HDF5Constants.H5I_INVALID_HID;
}
_deleteFile(H5_FILE);
System.out.println();
}
@Test
public void testH5Fget_create_plist() {
long plist = HDF5Constants.H5I_INVALID_HID;
try {
plist = H5.H5Fget_create_plist(H5fid);
}
catch (Throwable err) {
fail("H5.H5Fget_create_plist: " + err);
}
assertTrue(plist > 0);
try {H5.H5Pclose(plist);} catch (HDF5LibraryException e) {e.printStackTrace();}
}
@Test(expected = HDF5LibraryException.class)
public void testH5Fget_create_plist_closed() throws Throwable {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
}
// it should fail because the file was closed.
H5.H5Fget_create_plist(H5fid);
}
@Test
public void testH5Fget_access_plist() {
long plist = HDF5Constants.H5I_INVALID_HID;
try {
plist = H5.H5Fget_access_plist(H5fid);
}
catch (Throwable err) {
fail("H5.H5Fget_access_plist: " + err);
}
assertTrue(plist > 0);
try {H5.H5Pclose(plist);} catch (HDF5LibraryException e) {e.printStackTrace();}
}
@Test(expected = HDF5LibraryException.class)
public void testH5Fget_access_plist_closed() throws Throwable {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
}
// it should fail because the file was closed.
H5.H5Fget_access_plist(H5fid);
}
@Test
public void testH5Fget_intent_rdwr() {
int intent = 0;
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = HDF5Constants.H5I_INVALID_HID;
}
try {
H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR,
HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
}
try {
intent = H5.H5Fget_intent(H5fid);
}
catch (Throwable err) {
fail("H5.H5Fget_intent: " + err);
}
assertEquals(HDF5Constants.H5F_ACC_RDWR, intent);
}
@Test
public void testH5Fget_intent_rdonly() {
int intent = 0;
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
H5fid = HDF5Constants.H5I_INVALID_HID;
}
try {
H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY,
HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
fail("H5.H5Fopen: " + err);
}
try {
intent = H5.H5Fget_intent(H5fid);
}
catch (Throwable err) {
fail("H5.H5Fget_intent: " + err);
}
assertEquals(HDF5Constants.H5F_ACC_RDONLY, intent);
}
@Test
public void testH5Fget_obj_count() {
long count = -1;
for (int i = 0; i < OBJ_TYPES.length; i++) {
try {
count = H5.H5Fget_obj_count(H5fid, OBJ_TYPES[i]);
}
catch (Throwable err) {
fail("H5.H5Fget_obj_count: " + err);
}
assertEquals(count, OBJ_COUNTS[i]);
}
}
@Test
public void testH5Fget_obj_ids() {
long count = 0;
long max_objs = 100;
long[] obj_id_list = new long[(int)max_objs];
int[] open_obj_counts = new int[OBJ_TYPES.length];
for (int i = 0; i < OBJ_TYPES.length; i++)
open_obj_counts[i] = 0;
open_obj_counts[0] = 1;
for (int i = 0; i < OBJ_TYPES.length - 1; i++)
open_obj_counts[OBJ_TYPES.length - 1] += open_obj_counts[i];
for (int i = 0; i < OBJ_TYPES.length; i++) {
try {
count = H5.H5Fget_obj_ids(H5fid, OBJ_TYPES[i], max_objs,
obj_id_list);
}
catch (Throwable err) {
fail("H5.H5Fget_obj_ids: " + err);
}
assertEquals(count, open_obj_counts[i]);
}
}
/**
* TODO: need to add objects to the file after H5G[D,T]create() functions
* are implemented.
*/
//
// @Test
// public void testH5Fmount_unmount() {
// String file1 = "src.h5";
// String file2 = "dst.h5";
// String group1 = "/G";
// String group2 = "/MOUNTED";
//
// _createH5File(file1);
// _createH5File(file2);
//
// int fid1 = _openFile(file1, HDF5Constants.H5F_ACC_RDWR);
// assertTrue(fid1 > 0);
//
// int fid2 = _openFile(file2, HDF5Constants.H5F_ACC_RDWR);
// assertTrue(fid2 > 0);
//
// // create a group at file1
// int gid = _createGroup(fid1, group1);
// try { H5.H5Gclose(gid); } catch (Exception ex) {}
//
// // create a group at file 2
// gid = _createGroup(fid2, group2);
// try { H5.H5Gclose(gid); } catch (Exception ex) {}
//
// // before mount, "/G/MOUNTED" does not exists in file1
// gid = _openGroup(fid1, group1+group2);
// assertTrue(gid < 0);
//
// // Mount file2 under G in the file1
// try {
// H5.H5Fmount(fid1, group1, fid2, HDF5Constants.H5P_DEFAULT);
// }
// catch (Throwable err) {
// fail("H5.H5Fmount: "+err);
// }
//
// // now file1 should have group "/G/MOUNTED"
// gid = _openGroup(fid1, group1+group2);
// assertTrue(gid > 0);
// try { H5.H5Gclose(gid); } catch (Exception ex) {}
//
// // unmount file2 from file1
// try {
// H5.H5Funmount(fid1, group1);
// }
// catch (Throwable err) {
// fail("H5.H5Funmount: "+err);
// }
//
// // file2 was unmounted from file1, "/G/MOUNTED" does not exists in file1
// gid = _openGroup(fid1, group1+group2);
// assertTrue(gid < 0);
//
// try { H5.H5Fclose(fid1); } catch (Exception ex) {}
// try { H5.H5Fclose(fid2); } catch (Exception ex) {}
//
// _deleteFile(file1);
// _deleteFile(file2);
// }
}
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