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import inspect
from hdmf.container import Container, Data, MultiContainerInterface
from hdmf.testing import TestCase
from hdmf.utils import LabelledDict, get_docval
class OData(Data):
pass
class Foo(MultiContainerInterface):
__clsconf__ = [
{
'attr': 'containers',
'add': 'add_container',
'type': (Container, ),
'get': 'get_container',
},
{
'attr': 'data',
'add': 'add_data',
'type': (Data, OData),
},
{
'attr': 'foo_data',
'add': 'add_foo_data',
'type': OData,
'create': 'create_foo_data',
},
{
'attr': 'things',
'add': 'add_thing',
'type': (Container, Data, OData),
},
]
class FooSingle(MultiContainerInterface):
__clsconf__ = {
'attr': 'containers',
'add': 'add_container',
'type': (Container, ),
}
class Baz(MultiContainerInterface):
__containers = dict()
__clsconf__ = [
{
'attr': 'containers',
'add': 'add_container',
'type': Container,
'get': 'get_container',
},
]
# use custom keyword arguments
def __init__(self, name, other_arg, my_containers):
super().__init__(name=name)
self.other_arg = other_arg
self.containers = {'my ' + v.name: v for v in my_containers}
@property
def containers(self):
return self.__containers
@containers.setter
def containers(self, value):
self.__containers = value
class TestBasic(TestCase):
def test_init_docval(self):
"""Test that the docval for the __init__ method is set correctly."""
dv = get_docval(Foo.__init__)
self.assertEqual(dv[0]['name'], 'containers')
self.assertEqual(dv[1]['name'], 'data')
self.assertEqual(dv[2]['name'], 'foo_data')
self.assertEqual(dv[3]['name'], 'things')
self.assertTupleEqual(dv[0]['type'], (list, tuple, dict, Container))
self.assertTupleEqual(dv[1]['type'], (list, tuple, dict, Data, OData))
self.assertTupleEqual(dv[2]['type'], (list, tuple, dict, OData))
self.assertTupleEqual(dv[3]['type'], (list, tuple, dict, Container, Data, OData))
self.assertEqual(dv[0]['doc'], 'Container to store in this interface')
self.assertEqual(dv[1]['doc'], 'Data or OData to store in this interface')
self.assertEqual(dv[2]['doc'], 'OData to store in this interface')
self.assertEqual(dv[3]['doc'], 'Container, Data, or OData to store in this interface')
for i in range(4):
self.assertDictEqual(dv[i]['default'], {})
self.assertEqual(dv[4]['name'], 'name')
self.assertEqual(dv[4]['type'], str)
self.assertEqual(dv[4]['doc'], 'the name of this container')
self.assertEqual(dv[4]['default'], 'Foo')
def test_add_docval(self):
"""Test that the docval for the add method is set correctly."""
expected_doc = "add_container(containers)\n\nAdd one or multiple Container objects to this Foo"
self.assertTrue(Foo.add_container.__doc__.startswith(expected_doc))
dv = get_docval(Foo.add_container)
self.assertEqual(dv[0]['name'], 'containers')
self.assertTupleEqual(dv[0]['type'], (list, tuple, dict, Container))
self.assertEqual(dv[0]['doc'], 'one or multiple Container objects to add to this Foo')
self.assertFalse('default' in dv[0])
def test_create_docval(self):
"""Test that the docval for the create method is set correctly."""
dv = get_docval(Foo.create_foo_data)
self.assertEqual(dv[0]['name'], 'name')
self.assertEqual(dv[1]['name'], 'data')
def test_getter_docval(self):
"""Test that the docval for the get method is set correctly."""
dv = get_docval(Foo.get_container)
self.assertEqual(dv[0]['doc'], 'the name of the Container')
self.assertIsNone(dv[0]['default'])
def test_getitem_docval(self):
"""Test that the docval for __getitem__ is set correctly."""
dv = get_docval(Baz.__getitem__)
self.assertEqual(dv[0]['doc'], 'the name of the Container')
self.assertIsNone(dv[0]['default'])
def test_attr_property(self):
"""Test that a property is created for the attribute."""
properties = inspect.getmembers(Foo, lambda o: isinstance(o, property))
match = [p for p in properties if p[0] == 'containers']
self.assertEqual(len(match), 1)
def test_attr_getter(self):
"""Test that the getter for the attribute dict returns a LabelledDict."""
foo = Foo()
self.assertTrue(isinstance(foo.containers, LabelledDict))
def test_init_empty(self):
"""Test that initializing the MCI with no arguments initializes the attribute dict empty."""
foo = Foo()
self.assertDictEqual(foo.containers, {})
self.assertEqual(foo.name, 'Foo')
def test_init_multi(self):
"""Test that initializing the MCI with no arguments initializes the attribute dict empty."""
obj1 = Container('obj1')
data1 = Data('data1', [1, 2, 3])
foo = Foo(containers=obj1, data=data1)
self.assertDictEqual(foo.containers, {'obj1': obj1})
self.assertDictEqual(foo.data, {'data1': data1})
def test_init_custom_name(self):
"""Test that initializing the MCI with a custom name works."""
foo = Foo(name='test_foo')
self.assertEqual(foo.name, 'test_foo')
# init, create, and setter calls add, so just test add
def test_add_single(self):
"""Test that adding a container to the attribute dict correctly adds the container."""
obj1 = Container('obj1')
foo = Foo()
foo.add_container(obj1)
self.assertDictEqual(foo.containers, {'obj1': obj1})
self.assertIs(obj1.parent, foo)
def test_add_single_modified(self):
"""Test that adding a container to the attribute dict correctly makes the MCI as modified."""
obj1 = Container('obj1')
foo = Foo()
foo.set_modified(False) # set to False so that we can test whether add_container makes it True
foo.add_container(obj1)
self.assertTrue(foo.modified)
def test_add_single_not_parent(self):
"""Test that adding a container with a parent to the attribute dict correctly adds the container."""
obj1 = Container('obj1')
obj2 = Container('obj2')
obj1.parent = obj2
foo = Foo()
foo.add_container(obj1)
self.assertDictEqual(foo.containers, {'obj1': obj1})
self.assertIs(obj1.parent, obj2)
def test_add_single_not_parent_modified(self):
"""Test that adding a container with a parent to the attribute dict correctly marks the MCI as modified."""
obj1 = Container('obj1')
obj2 = Container('obj2')
obj1.parent = obj2
foo = Foo()
foo.set_modified(False) # set to False so that we can test whether add_container makes it True
foo.add_container(obj1)
self.assertTrue(foo.modified)
def test_add_single_dup(self):
"""Test that adding a container to the attribute dict correctly adds the container."""
obj1 = Container('obj1')
foo = Foo(obj1)
msg = (f"Cannot add <class 'hdmf.container.Container'> 'obj1' at 0x{id(obj1)} to dict attribute "
"'containers' in <class 'tests.unit.test_multicontainerinterface.Foo'> 'Foo'. "
f"<class 'hdmf.container.Container'> 'obj1' at 0x{id(obj1)} already exists in 'containers' "
"and has the same name.")
with self.assertRaisesWith(ValueError, msg):
foo.add_container(obj1)
def test_add_list(self):
"""Test that adding a list to the attribute dict correctly adds the items."""
obj1 = Container('obj1')
obj2 = Container('obj2')
foo = Foo()
foo.add_container([obj1, obj2])
self.assertDictEqual(foo.containers, {'obj1': obj1, 'obj2': obj2})
def test_add_dict(self):
"""Test that adding a dict to the attribute dict correctly adds the input dict values."""
obj1 = Container('obj1')
obj2 = Container('obj2')
foo = Foo()
foo.add_container({'a': obj1, 'b': obj2})
self.assertDictEqual(foo.containers, {'obj1': obj1, 'obj2': obj2})
def test_attr_setter_none(self):
"""Test that setting the attribute dict to None does not alter the dict."""
obj1 = Container('obj1')
foo = Foo(obj1)
foo.containers = None
self.assertDictEqual(foo.containers, {'obj1': obj1})
def test_remove_child(self):
"""Test that removing a child container from the attribute dict resets the parent to None."""
obj1 = Container('obj1')
foo = Foo(obj1)
del foo.containers['obj1']
self.assertDictEqual(foo.containers, {})
self.assertIsNone(obj1.parent)
def test_remove_non_child(self):
"""Test that removing a non-child container from the attribute dict resets the parent to None."""
obj1 = Container('obj1')
obj2 = Container('obj2')
obj1.parent = obj2
foo = Foo(obj1)
del foo.containers['obj1']
self.assertDictEqual(foo.containers, {})
self.assertIs(obj1.parent, obj2)
def test_getter_empty(self):
"""Test that calling the getter with no args and no items in the attribute dict raises an error."""
foo = Foo()
msg = "containers of Foo 'Foo' is empty."
with self.assertRaisesWith(ValueError, msg):
foo.get_container()
def test_getter_none(self):
"""Test that calling the getter with no args and one item in the attribute returns the item."""
obj1 = Container('obj1')
foo = Foo(obj1)
self.assertIs(foo.get_container(), obj1)
def test_getter_none_multiple(self):
"""Test that calling the getter with no args and multiple items in the attribute dict raises an error."""
obj1 = Container('obj1')
obj2 = Container('obj2')
foo = Foo([obj1, obj2])
msg = "More than one element in containers of Foo 'Foo' -- must specify a name."
with self.assertRaisesWith(ValueError, msg):
foo.get_container()
def test_getter_name(self):
"""Test that calling the getter with a correct key works."""
obj1 = Container('obj1')
foo = Foo(obj1)
self.assertIs(foo.get_container('obj1'), obj1)
def test_getter_name_not_found(self):
"""Test that calling the getter with a key not in the attribute dict raises a KeyError."""
foo = Foo()
msg = "\"'obj1' not found in containers of Foo 'Foo'.\""
with self.assertRaisesWith(KeyError, msg):
foo.get_container('obj1')
def test_getitem_multiconf(self):
"""Test that classes with multiple attribute configurations cannot use getitem."""
foo = Foo()
msg = "'Foo' object is not subscriptable"
with self.assertRaisesWith(TypeError, msg):
foo['aa']
def test_getitem(self):
"""Test that getitem works."""
obj1 = Container('obj1')
foo = FooSingle(obj1)
self.assertIs(foo['obj1'], obj1)
def test_getitem_single_none(self):
"""Test that getitem works wwhen there is a single item and no name is given to getitem."""
obj1 = Container('obj1')
foo = FooSingle(obj1)
self.assertIs(foo[None], obj1)
def test_getitem_empty(self):
"""Test that an error is raised if the attribute dict is empty and no name is given to getitem."""
foo = FooSingle()
msg = "FooSingle 'FooSingle' is empty."
with self.assertRaisesWith(ValueError, msg):
foo[None]
def test_getitem_multiple(self):
"""Test that an error is raised if the attribute dict has multiple values and no name is given to getitem."""
obj1 = Container('obj1')
obj2 = Container('obj2')
foo = FooSingle([obj1, obj2])
msg = "More than one Container in FooSingle 'FooSingle' -- must specify a name."
with self.assertRaisesWith(ValueError, msg):
foo[None]
def test_getitem_not_found(self):
"""Test that a KeyError is raised if the key is not found using getitem."""
obj1 = Container('obj1')
foo = FooSingle(obj1)
msg = "\"'obj2' not found in FooSingle 'FooSingle'.\""
with self.assertRaisesWith(KeyError, msg):
foo['obj2']
def test_repr_html_(self):
obj1 = Container('obj1')
obj2 = Container('obj2')
foo = FooSingle()
foo.add_container([obj1, obj2])
self.assertEqual(
foo._repr_html_(),
(
'\n <style>\n .container-fields {\n font-family: "Open Sans", Arial, '
'sans-serif;\n }\n .container-fields .field-value {\n color: '
'#00788E;\n }\n .container-fields details > summary {\n cursor: '
'pointer;\n display: list-item;\n }\n .container-fields details '
'> summary:hover {\n color: #0A6EAA;\n }\n </style>\n \n '
' <script>\n function copyToClipboard(text) {\n '
'navigator.clipboard.writeText(text).then(function() {\n console.log(\'Copied to '
'clipboard: \' + text);\n }, function(err) {\n console.error('
'\'Could not copy text: \', err);\n });\n }\n\n '
'document.addEventListener(\'DOMContentLoaded\', function() {\n let fieldKeys = '
'document.querySelectorAll(\'.container-fields .field-key\');\n fieldKeys.forEach('
'function(fieldKey) {\n fieldKey.addEventListener(\'click\', function() {\n '
' let accessCode = fieldKey.getAttribute(\'title\').replace(\'Access code: \', '
'\'\');\n copyToClipboard(accessCode);\n });\n '
' });\n });\n </script>\n <div class=\'container-wrap\'><div '
'class=\'container-header\'><div '
'class=\'xr-obj-type\'><h3>FooSingle</h3></div></div><details><summary style="display: list-item; '
'margin-left: 0px;" class="container-fields field-key" '
'title=".containers"><b>containers</b></summary><details><summary style="display: list-item; '
'margin-left: 20px;" class="container-fields field-key" title=".containers['
'\'obj1\']"><b>obj1</b></summary></details><details><summary style="display: list-item; margin-left: '
'20px;" class="container-fields field-key" title=".containers['
'\'obj2\']"><b>obj2</b></summary></details></details></div>'
)
)
class TestOverrideInit(TestCase):
def test_override_init(self):
"""Test that overriding __init__ works."""
obj1 = Container('obj1')
obj2 = Container('obj2')
containers = [obj1, obj2]
baz = Baz(name='test_baz', other_arg=1, my_containers=containers)
self.assertEqual(baz.name, 'test_baz')
self.assertEqual(baz.other_arg, 1)
def test_override_property(self):
"""Test that overriding the attribute property works."""
obj1 = Container('obj1')
obj2 = Container('obj2')
containers = [obj1, obj2]
baz = Baz(name='test_baz', other_arg=1, my_containers=containers)
self.assertDictEqual(baz.containers, {'my obj1': obj1, 'my obj2': obj2})
self.assertFalse(isinstance(baz.containers, LabelledDict))
self.assertIs(baz.get_container('my obj1'), obj1)
baz.containers = {}
self.assertDictEqual(baz.containers, {})
class TestNoClsConf(TestCase):
def test_mci_init(self):
"""Test that MultiContainerInterface cannot be instantiated."""
msg = "Can't instantiate class MultiContainerInterface."
with self.assertRaisesWith(TypeError, msg):
MultiContainerInterface(name='a')
def test_init_no_cls_conf(self):
"""Test that defining an MCI subclass without __clsconf__ raises an error."""
class Bar(MultiContainerInterface):
pass
msg = ("MultiContainerInterface subclass Bar is missing __clsconf__ attribute. Please check that "
"the class is properly defined.")
with self.assertRaisesWith(TypeError, msg):
Bar(name='a')
def test_init_superclass_no_cls_conf(self):
"""Test that a subclass of an MCI class without a __clsconf__ can be initialized."""
class Bar(MultiContainerInterface):
pass
class Qux(Bar):
__clsconf__ = {
'attr': 'containers',
'add': 'add_container',
'type': Container,
}
obj1 = Container('obj1')
qux = Qux(obj1)
self.assertDictEqual(qux.containers, {'obj1': obj1})
class TestBadClsConf(TestCase):
def test_wrong_type(self):
"""Test that an error is raised if __clsconf__ is missing the add key."""
msg = "'__clsconf__' for MultiContainerInterface subclass Bar must be a dict or a list of dicts."
with self.assertRaisesWith(TypeError, msg):
class Bar(MultiContainerInterface):
__clsconf__ = (
{
'attr': 'data',
'add': 'add_data',
'type': (Data, ),
},
)
def test_missing_add(self):
"""Test that an error is raised if __clsconf__ is missing the add key."""
msg = "MultiContainerInterface subclass Bar is missing 'add' key in __clsconf__"
with self.assertRaisesWith(ValueError, msg):
class Bar(MultiContainerInterface):
__clsconf__ = {}
def test_missing_attr(self):
"""Test that an error is raised if __clsconf__ is missing the attr key."""
msg = "MultiContainerInterface subclass Bar is missing 'attr' key in __clsconf__"
with self.assertRaisesWith(ValueError, msg):
class Bar(MultiContainerInterface):
__clsconf__ = {
'add': 'add_container',
}
def test_missing_type(self):
"""Test that an error is raised if __clsconf__ is missing the type key."""
msg = "MultiContainerInterface subclass Bar is missing 'type' key in __clsconf__"
with self.assertRaisesWith(ValueError, msg):
class Bar(MultiContainerInterface):
__clsconf__ = {
'add': 'add_container',
'attr': 'containers',
}
def test_create_multiple_types(self):
"""Test that an error is raised if __clsconf__ specifies 'create' key with multiple types."""
msg = ("Cannot specify 'create' key in __clsconf__ for MultiContainerInterface subclass Bar "
"when 'type' key is not a single type")
with self.assertRaisesWith(ValueError, msg):
class Bar(MultiContainerInterface):
__clsconf__ = {
'attr': 'data',
'add': 'add_data',
'type': (Data, ),
'create': 'create_data',
}
def test_missing_add_multi(self):
"""Test that an error is raised if one item of a __clsconf__ list is missing the add key."""
msg = "MultiContainerInterface subclass Bar is missing 'add' key in __clsconf__ at index 1"
with self.assertRaisesWith(ValueError, msg):
class Bar(MultiContainerInterface):
__clsconf__ = [
{
'attr': 'data',
'add': 'add_data',
'type': (Data, ),
},
{}
]
def test_missing_attr_multi(self):
"""Test that an error is raised if one item of a __clsconf__ list is missing the attr key."""
msg = "MultiContainerInterface subclass Bar is missing 'attr' key in __clsconf__ at index 1"
with self.assertRaisesWith(ValueError, msg):
class Bar(MultiContainerInterface):
__clsconf__ = [
{
'attr': 'data',
'add': 'add_data',
'type': (Data, ),
},
{
'add': 'add_container',
}
]
def test_missing_type_multi(self):
"""Test that an error is raised if one item of a __clsconf__ list is missing the type key."""
msg = "MultiContainerInterface subclass Bar is missing 'type' key in __clsconf__ at index 1"
with self.assertRaisesWith(ValueError, msg):
class Bar(MultiContainerInterface):
__clsconf__ = [
{
'attr': 'data',
'add': 'add_data',
'type': (Data, ),
},
{
'add': 'add_container',
'attr': 'containers',
}
]
def test_create_multiple_types_multi(self):
"""Test that an error is raised if one item of a __clsconf__ list specifies 'create' key with multiple types."""
msg = ("Cannot specify 'create' key in __clsconf__ for MultiContainerInterface subclass Bar "
"when 'type' key is not a single type at index 1")
with self.assertRaisesWith(ValueError, msg):
class Bar(MultiContainerInterface):
__clsconf__ = [
{
'attr': 'data',
'add': 'add_data',
'type': (Data, ),
},
{
'add': 'add_container',
'attr': 'containers',
'type': (Container, ),
'create': 'create_container',
}
]
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