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#!/usr/bin/env python
import os
import errno
import fnmatch
import sys
import shlex
import shutil
from Cython.Distutils import build_ext
from sysconfig import get_config_vars
from subprocess import check_output, CalledProcessError, check_call
from setuptools import setup, Extension
from setuptools.command.build_clib import build_clib
from setuptools.errors import ExecError
from setuptools._distutils import log
TEST_HELP = """
Note: running tests is no longer done using 'python setup.py test'. Instead
you will need to run:
pytest
to also run the doctests:
pytest --doctest-plus --doctest-cython
"""
if "test" in sys.argv:
print(TEST_HELP)
sys.exit(1)
class build_external_clib(build_clib):
"""Subclass of Distutils' standard build_clib subcommand. Adds support for
libraries that are installed externally and detected with pkg-config, with
an optional fallback to build from a local configure-make-install style
distribution."""
def __init__(self, dist):
build_clib.__init__(self, dist)
self.build_args = {}
def env(self):
"""Construct an environment dictionary suitable for having pkg-config
pick up .pc files in the build_clib directory."""
# Test if pkg-config is present. If not, fall back to pykg-config.
try:
env = self._env
except AttributeError:
env = dict(os.environ)
try:
check_output(["pkg-config", "--version"])
except OSError as e:
if e.errno != errno.ENOENT:
raise
log.warn("pkg-config is not installed, falling back to pykg-config")
env["PKG_CONFIG"] = shutil.which('pykg-config.py')
else:
env["PKG_CONFIG"] = "pkg-config"
build_clib = os.path.realpath(self.build_clib)
pkg_config_path = (
os.path.join(build_clib, "lib64", "pkgconfig")
+ ":"
+ os.path.join(build_clib, "lib", "pkgconfig")
)
try:
pkg_config_path += ":" + env["PKG_CONFIG_PATH"]
except KeyError:
pass
env["PKG_CONFIG_PATH"] = pkg_config_path
self._env = env
return env
def pkgconfig(self, *packages):
env = self.env()
PKG_CONFIG = tuple(shlex.split(env["PKG_CONFIG"], posix=(os.sep == "/")))
kw = {}
index_key_flag = (
(2, "--cflags-only-I", ("include_dirs",)),
(0, "--cflags-only-other", ("extra_compile_args", "extra_link_args")),
(2, "--libs-only-L", ("library_dirs", "runtime_library_dirs")),
(2, "--libs-only-l", ("libraries",)),
(0, "--libs-only-other", ("extra_link_args",)),
)
for index, flag, keys in index_key_flag:
cmd = PKG_CONFIG + (flag,) + tuple(packages)
log.debug("%s", " ".join(cmd))
args = [
token[index:].decode() for token in check_output(cmd, env=env).split()
]
if args:
for key in keys:
kw.setdefault(key, []).extend(args)
return kw
def finalize_options(self):
"""Run 'autoreconf -i' for any bundled libraries to generate the
configure script."""
build_clib.finalize_options(self)
env = self.env()
for lib_name, build_info in self.libraries:
if "sources" not in build_info:
log.info(
"checking if configure script for library '%s' exists", lib_name
)
if not os.path.exists(
os.path.join(build_info["local_source"], "configure")
):
log.info("running 'autoreconf -i' for library '%s'", lib_name)
check_call(
["autoreconf", "-i"], cwd=build_info["local_source"], env=env
)
def build_library(
self,
library,
pkg_config_name,
local_source=None,
supports_non_srcdir_builds=True,
):
log.info("checking if library '%s' is installed", library)
try:
build_args = self.pkgconfig(pkg_config_name)
log.info("found '%s' installed, using it", library)
except CalledProcessError:
# If local_source is not specified, then immediately fail.
if local_source is None:
raise ExecError(f"library '{library}' is not installed")
log.info("building library '%s' from source", library)
env = self.env()
# Determine which compilers we are to use, and what flags.
# This is based on what distutils.sysconfig.customize_compiler()
# does, but that function has a problem that it doesn't produce
# necessary (e.g. architecture) flags for C++ compilers.
cc, cxx, opt, cflags = get_config_vars("CC", "CXX", "OPT", "CFLAGS")
cxxflags = cflags
if "CC" in env:
cc = env["CC"]
if "CXX" in env:
cxx = env["CXX"]
if "CFLAGS" in env:
cflags = opt + " " + env["CFLAGS"]
if "CXXFLAGS" in env:
cxxflags = opt + " " + env["CXXFLAGS"]
# Use a subdirectory of build_temp as the build directory.
build_temp = os.path.realpath(os.path.join(self.build_temp, library))
# Destination for headers and libraries is build_clib.
build_clib = os.path.realpath(self.build_clib)
# Create build directories if they do not yet exist.
self.mkpath(build_temp)
self.mkpath(build_clib)
if not supports_non_srcdir_builds:
self._stage_files_recursive(local_source, build_temp)
# Run configure.
cmd = [
"/bin/sh",
os.path.join(os.path.realpath(local_source), "configure"),
"--prefix=" + build_clib,
"--disable-curl",
"--with-pic",
"--disable-maintainer-mode",
]
log.info("%s", " ".join(cmd))
check_call(
cmd,
cwd=build_temp,
env=dict(env, CC=cc, CXX=cxx, CFLAGS=cflags, CXXFLAGS=cxxflags),
)
# Run make install.
cmd = ["make", "install"]
log.info("%s", " ".join(cmd))
check_call(cmd, cwd=build_temp, env=env)
build_args = self.pkgconfig(pkg_config_name)
return build_args
# Done!
@staticmethod
def _list_files_recursive(path, skip=(".*", "*.o", "autom4te.cache")):
"""Yield paths to all of the files contained within the given path,
following symlinks. If skip is a tuple of fnmatch()-style wildcard
strings, skip any directory or filename matching any of the patterns in
skip."""
for dirpath, dirnames, filenames in os.walk(path, followlinks=True):
if not any(
any(fnmatch.fnmatch(p, s) for s in skip) for p in dirpath.split(os.sep)
):
for filename in filenames:
if not any(fnmatch.fnmatch(filename, s) for s in skip):
yield os.path.join(dirpath, filename)
def _stage_files_recursive(self, src, dest, skip=None):
"""Hard link or copy all of the files in the path src into the path dest.
Subdirectories are created as needed, and files in dest are overwritten."""
# Use hard links if they are supported on this system.
if hasattr(os, "link"):
link = "hard"
elif hasattr(os, "symlink"):
link = "sym"
else:
link = None
for dirpath, dirnames, filenames in os.walk(src, followlinks=True):
if not any(p.startswith(".") for p in dirpath.split(os.sep)):
dest_dirpath = os.path.join(
dest, dirpath.split(src, 1)[1].lstrip(os.sep)
)
self.mkpath(dest_dirpath)
for filename in filenames:
if not filename.startswith("."):
src_path = os.path.join(dirpath, filename)
dest_path = os.path.join(dest_dirpath, filename)
if not os.path.exists(dest_path):
self.copy_file(
os.path.join(dirpath, filename),
os.path.join(dest_dirpath, filename),
)
def get_source_files(self):
"""Copied from Distutils' own build_clib, but modified so that it is not
an error for a build_info dictionary to lack a 'sources' key. If there
is no 'sources' key, then all files contained within the path given by
the 'local_sources' value are returned."""
self.check_library_list(self.libraries)
filenames = []
for (lib_name, build_info) in self.libraries:
sources = build_info.get("sources")
if sources is None or not isinstance(sources, (list, tuple)):
sources = list(self._list_files_recursive(build_info["local_source"]))
filenames.extend(sources)
return filenames
def build_libraries(self, libraries):
# Build libraries that have no 'sources' key, accumulating the output
# from pkg-config.
for lib_name, build_info in libraries:
if "sources" not in build_info:
for key, value in self.build_library(lib_name, **build_info).items():
if key in self.build_args:
self.build_args[key].extend(value)
else:
self.build_args[key] = value
# Use parent method to build libraries that have a 'sources' key.
build_clib.build_libraries(
self,
(
(lib_name, build_info)
for lib_name, build_info in libraries
if "sources" in build_info
),
)
class custom_build_ext(build_ext):
def finalize_options(self):
build_ext.finalize_options(self)
# Add Numpy header search path path
import numpy
self.include_dirs.append(numpy.get_include())
def run(self):
# If we were asked to build any C/C++ libraries, add the directory
# where we built them to the include path. (It's already on the library
# path.)
if self.distribution.has_c_libraries():
self.run_command("build_clib")
build_clib = self.get_finalized_command("build_clib")
for key, value in build_clib.build_args.items():
for ext in self.extensions:
if not hasattr(ext, key) or getattr(ext, key) is None:
setattr(ext, key, value)
else:
getattr(ext, key).extend(value)
build_ext.run(self)
ext_kwargs = dict(
extra_compile_args=["-std=c++11"],
define_macros=[('NPY_NO_DEPRECATED_API', 'NPY_1_19_API_VERSION')],
language="c++",
)
setup(
libraries=[
(
"cfitsio",
{
"pkg_config_name": "cfitsio >= 4.5.0",
"local_source": "cextern/cfitsio",
},
),
(
"sharp",
{
"pkg_config_name": "libsharp",
"local_source": "cextern/healpix/src/common_libraries/libsharp",
},
),
(
"healpix_cxx",
{
"pkg_config_name": "healpix_cxx >= 3.83.0",
"local_source": "cextern/healpix/src/cxx",
},
),
],
cmdclass={"build_ext": custom_build_ext, "build_clib": build_external_clib},
ext_modules=[
Extension(
"healpy._healpy_pixel_lib",
sources=["src/_healpy_pixel_lib.cc"],
**ext_kwargs
),
Extension(
"healpy._healpy_sph_transform_lib",
sources=["src/_healpy_sph_transform_lib.cc"],
**ext_kwargs
),
Extension(
"healpy._query_disc",
["src/_query_disc.pyx"],
cython_directives=dict(embedsignature=True),
**ext_kwargs
),
Extension(
"healpy._sphtools",
["src/_sphtools.pyx"],
cython_directives=dict(embedsignature=True),
**ext_kwargs
),
Extension(
"healpy._pixelfunc",
["src/_pixelfunc.pyx"],
cython_directives=dict(embedsignature=True),
**ext_kwargs
),
Extension(
"healpy._masktools",
["src/_masktools.pyx"],
cython_directives=dict(embedsignature=True),
**ext_kwargs
),
Extension(
"healpy._hotspots",
["src/_hotspots.pyx", "src/_healpy_hotspots_lib.cc"],
cython_directives=dict(embedsignature=True),
**ext_kwargs
),
Extension(
"healpy._line_integral_convolution",
["src/_line_integral_convolution.pyx"],
cython_directives=dict(embedsignature=True),
**ext_kwargs
),
],
)
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