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#!/usr/bin/env ruby
# Copyright (c) 2015 Alexandra Figlovskaya <fglval@gmail.com>
# Copyright (c) 2015-2019 Aleksey Cheusov <vle@gmx.net>
#
# Permission is hereby granted, free of charge, to any person obtaining
# a copy of this software and associated documentation files (the
# "Software"), to deal in the Software without restriction, including
# without limitation the rights to use, copy, modify, merge, publish,
# distribute, sublicense, and/or sell copies of the Software, and to
# permit persons to whom the Software is furnished to do so, subject to
# the following conditions:
#
# The above copyright notice and this permission notice shall be
# included in all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
# EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
# MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
# NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
# LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
# OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
# WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
require 'optparse'
$options = {}
$fold_cnt = nil
$ratio = nil
$tmp_dir = nil
$seed = Random.new_seed
$stratified = true
OptionParser.new do |opts|
opts.banner = <<EOF
heri-split splits the given dataset (in svmlight format)
into training and testing sets for further evaluation.
If option -c is specified, test<N>.txt and train<N>.txt files
(also in svmlight format) are created, where N is the number of fold.
If option -R is specified, test.txt and train.txt files
are created for the same purposes.
Also testing_fold.txt file is created, where for each object (one per line)
its testing fold number is specified if oprion -c is applied.
The file testing_fold.txt contain either 1 for testing set and 0
for training set, if option -R is applied.
Usage:
heri-split [OPTIONS] dataset1 [dataset2...]
OPTIONS:
EOF
opts.on('-h', '--help','display this message and exit') do
puts opts
exit 0
end
opts.on("-cFOLD_CNT", "--folds=FOLD_CNT", "A number if folds (mandatory option)") do |c|
$fold_cnt = c.to_i
end
opts.on("-dDIR", "--output-dir=DIR", "Output directory (mandatory option)") do |d|
$tmp_dir = d
end
opts.on("-sSEED", "--seed=SEED", "Seed for pseudo-random number generator") do |s|
if s != "" then
$seed = s.to_i
end
end
opts.on("-r", "--random", "Use random split instead of stratified") do
$stratified = false
end
opts.on("-R", "--ratio=RATIO", "Split input dataset into training and testing sets
with the specified RATIO (in percents)") do |r|
$ratio = r.to_i
$fold_cnt = 0
end
opts.separator " "
end.parse!
if $tmp_dir == nil or ($fold_cnt == nil and $ratio == nil) then
STDERR.puts("Options -c/-R and -d are mandatory, see heri-split -h for details")
exit(1)
end
$rnd = Random.new($seed)
# same as in StratifiedSplitter
$files_test = []
$files_train = []
$testing_fold = File.open($tmp_dir+"/testing_fold.txt", 'w:ASCII-8BIT')
(1..$fold_cnt).each do |i|
name_train = "train" + "#{i.to_i}"
name_test = "test" + "#{i.to_i}"
$files_test << File.open($tmp_dir+"/"+name_test+".txt", 'w:ASCII-8BIT')
$files_train << File.open($tmp_dir+ "/"+ name_train+".txt", 'w:ASCII-8BIT')
end
if $ratio != nil
$files_test << File.open($tmp_dir+"/test.txt", 'w:ASCII-8BIT')
$files_train << File.open($tmp_dir+ "/train.txt", 'w:ASCII-8BIT')
end
def random_split_cv()
nums = []
curr_number = 0
ARGV.each do |fn|
File.open(fn, "r:ASCII-8BIT").each_line do |line|
if line =~ /^([^\s]+)\s/
nums << curr_number % $fold_cnt
curr_number += 1
end
end
end
nums.shuffle!(random: $rnd)
curr_number = 0
ARGV.each do |fn|
File.open(fn, "r:ASCII-8BIT").each_line do |line|
if line =~ /^([^\s]+)\s/
fold_num = nums[curr_number]
$fold_cnt.times do |n|
if fold_num == n
$files_test[n].puts line
$testing_fold.puts n+1
else
$files_train[n].puts line
end
end
curr_number += 1
end
end
end
end
def random_split_holdout()
nums = []
threshold = 1
line_count = 0
ARGV.each do |fn|
File.open(fn, "r:ASCII-8BIT").each_line do |line|
if line =~ /^([^\s]+)\s/
line_count += 1
nums << $rnd.rand()
end
end
end
threshold = (line_count.to_f * $ratio / 100).to_i
if threshold == 0
threshold = 1
end
threshold = nums.sort[threshold]
curr_number = 0
ARGV.each do |fn|
File.open(fn, "r:ASCII-8BIT").each_line do |line|
if line =~ /^([^\s]+)\s/
if nums[curr_number] < threshold
$files_train[0].puts line
$testing_fold.puts '0'
else
$files_test[0].puts line
$testing_fold.puts '1'
end
curr_number += 1
end
end
end
end
def random_split()
if $fold_cnt != nil and $fold_cnt > 0
random_split_cv()
else
random_split_holdout()
end
end
def stratified_split()
classes = Hash.new(0)
ARGV.each do |fn|
File.open(fn, "r:ASCII-8BIT").each_line do |line|
if line =~ /^([^\s]+)\s/
classes[$1] += 1
end
end
end
classes_arr = {}
classes.each do |x, y|
arr = []
y.times do |i|
arr << i
end
arr.shuffle!(random: $rnd)
classes_arr [x] = {}
arr.each_index do |i|
if $ratio != nil
cnt = (y.to_f * $ratio / 100).to_i
fold_train = (arr[i] < cnt)
classes_arr[x][i] = fold_train
else
fold_train = (i * $fold_cnt.to_f / arr.size).to_i
classes_arr[x][arr[i]] = fold_train
end
end
end
num_line = Hash.new(0)
ARGV.each do |fn|
File.open(fn, "r:ASCII-8BIT").each_line do |line|
if line =~ /^([^\s]+)\s/
curr_number = num_line[$1]
if $ratio != nil
if classes_arr[$1][curr_number]
$files_train[0].puts line
$testing_fold.puts "0"
else
$files_test[0].puts line
$testing_fold.puts "1"
end
else
$fold_cnt.times do |n|
if classes_arr[$1][curr_number] == n
$files_test[n].puts line
$testing_fold.puts n+1
else
$files_train[n].puts line
end
end
end
num_line[$1] += 1
end
end
end
end
if $stratified
stratified_split()
else
random_split()
end
$files_test.each { |x|
x.close
}
$files_train.each { |x|
x.close
}
$testing_fold.close
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