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|
Description: Perl script use lib
* Set paths to hhsuite components for Perl scripts.
Author: Laszlo Kajan <lkajan@rostlab.org>
--- hhsuite.orig/scripts/hhmakemodel.pl
+++ hhsuite/scripts/hhmakemodel.pl
@@ -28,7 +28,7 @@
# We are very grateful for bug reports! Please contact us at soeding@mpibpc.mpg.de
-use lib $ENV{"HHLIB"}."/scripts";
+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
use strict;
use Align;
--- hhsuite.orig/scripts/create_profile_from_hhm.pl
+++ hhsuite/scripts/create_profile_from_hhm.pl
@@ -27,7 +27,7 @@
# We are very grateful for bug reports! Please contact us at soeding@mpibpc.mpg.de
-use lib $ENV{"HHLIB"}."/scripts";
+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
use strict;
--- hhsuite.orig/scripts/create_profile_from_hmmer.pl
+++ hhsuite/scripts/create_profile_from_hmmer.pl
@@ -27,7 +27,7 @@
# We are very grateful for bug reports! Please contact us at soeding@mpibpc.mpg.de
-use lib $ENV{"HHLIB"}."/scripts";
+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
use strict;
--- hhsuite.orig/scripts/multithread.pl
+++ hhsuite/scripts/multithread.pl
@@ -29,7 +29,7 @@
# We are very grateful for bug reports! Please contact us at soeding@mpibpc.mpg.de
-use lib $ENV{"HHLIB"}."/scripts";
+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
use strict;
use POSIX;
--- hhsuite.orig/scripts/pdb2fasta.pl
+++ hhsuite/scripts/pdb2fasta.pl
@@ -26,7 +26,7 @@
# We are very grateful for bug reports! Please contact us at soeding@mpibpc.mpg.de
-use lib $ENV{"HHLIB"}."/scripts";
+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
use strict;
$|= 1; # Activate autoflushing on STDOUT
--- hhsuite.orig/scripts/pdbfilter.pl
+++ hhsuite/scripts/pdbfilter.pl
@@ -26,7 +26,7 @@
# We are very grateful for bug reports! Please contact us at soeding@mpibpc.mpg.de
-use lib $ENV{"HHLIB"}."/scripts";
+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
use strict;
--- hhsuite.orig/scripts/renumberpdb.pl
+++ hhsuite/scripts/renumberpdb.pl
@@ -27,7 +27,7 @@
# We are very grateful for bug reports! Please contact us at soeding@mpibpc.mpg.de
-use lib $ENV{"HHLIB"}."/scripts";
+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
use Align; # Needleman-Wunsch and Smith-Waterman alignment functions
use File::Temp qw/ tempfile /;
--- hhsuite.orig/scripts/splitfasta.pl
+++ hhsuite/scripts/splitfasta.pl
@@ -26,7 +26,7 @@
# We are very grateful for bug reports! Please contact us at soeding@mpibpc.mpg.de
-use lib $ENV{"HHLIB"}."/scripts";
+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
use strict;
use warnings;
--- hhsuite.orig/scripts/addss.pl
+++ hhsuite/scripts/addss.pl
@@ -28,7 +28,7 @@
# We are very grateful for bug reports! Please contact us at soeding@mpibpc.mpg.de
-use lib $ENV{"HHLIB"} . "/scripts";
+use lib ( $ENV{"HHLIB"} || '/usr/share/hhsuite' )."/scripts";
use HHPaths; # config file with path variables for nr, blast, psipred, pdb, dssp etc.
use Align; # Needleman-Wunsch and Smith-Waterman alignment functions
use File::Temp qw/ tempfile tempdir /;
|
